mRNA_F-serratus_M_contig102.270.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig102.270.1
Unique NamemRNA_F-serratus_M_contig102.270.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig102.270.1 vs. uniprot
Match: A0A2R4QQ84_9PHAE (NADH-ubiquinone oxidoreductase chain 5 n=3 Tax=Fucus TaxID=3011 RepID=A0A2R4QQ84_9PHAE)

HSP 1 Score: 227 bits (579), Expect = 1.420e-68
Identity = 116/134 (86.57%), Postives = 120/134 (89.55%), Query Frame = 1
Query:    1 VISKVGYATHSPASHFAYWLGSSTAFCTAFYPIQLLSLCSLVEPNGSRSLLLSASEGCWAIGLVLGLLAFPSMFVGYFSRDLFIGLGIDFWGNSLFCFSFNLSIIDAKFMSTSTKTMPLLLSMLGGFLRFILYR 402
            VI +VGYAT+S ASHFAYWLGS  AFCTAFY I+LLSLC LVEPNGSRSLLLSASEG WAIGLVLGLLA PSMFVGY SRDLFIGLG DFWGNSLFC  FNLSIIDA+FMSTSTK MPLLLSMLGGFL FILYR
Sbjct:  404 VILEVGYATYSTASHFAYWLGSFAAFCTAFYSIRLLSLCFLVEPNGSRSLLLSASEGSWAIGLVLGLLAIPSMFVGYLSRDLFIGLGTDFWGNSLFCLPFNLSIIDAEFMSTSTKIMPLLLSMLGGFLSFILYR 537          
BLAST of mRNA_F-serratus_M_contig102.270.1 vs. uniprot
Match: A0A8D5Z4B2_9PHAE (NADH-ubiquinone oxidoreductase chain 5 n=3 Tax=Punctaria TaxID=27943 RepID=A0A8D5Z4B2_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 7.220e-62
Identity = 97/134 (72.39%), Postives = 112/134 (83.58%), Query Frame = 1
Query:    1 VISKVGYATHSPASHFAYWLGSSTAFCTAFYPIQLLSLCSLVEPNGSRSLLLSASEGCWAIGLVLGLLAFPSMFVGYFSRDLFIGLGIDFWGNSLFCFSFNLSIIDAKFMSTSTKTMPLLLSMLGGFLRFILYR 402
            VI +VGYAT+S  SHFAYWLGS  AFCTAFY I+LL+LC L EPNGSRSL+LSASEG W +G+VLG+LA PSMF+GYFSRDLFIGLG DFWGN+LFC   NLSIIDA+FMSTS K +PL  S++GG   FILY+
Sbjct:   14 VILEVGYATYSSGSHFAYWLGSVAAFCTAFYSIRLLALCFLSEPNGSRSLILSASEGSWPMGVVLGILAIPSMFIGYFSRDLFIGLGTDFWGNALFCLPVNLSIIDAEFMSTSIKILPLCFSIIGGLSSFILYK 147          
BLAST of mRNA_F-serratus_M_contig102.270.1 vs. uniprot
Match: A0A1Z4F5P8_9PHAE (NADH-ubiquinone oxidoreductase chain 5 (Fragment) n=2 Tax=Lessonia variegata TaxID=549686 RepID=A0A1Z4F5P8_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 4.470e-61
Identity = 98/134 (73.13%), Postives = 111/134 (82.84%), Query Frame = 1
Query:    1 VISKVGYATHSPASHFAYWLGSSTAFCTAFYPIQLLSLCSLVEPNGSRSLLLSASEGCWAIGLVLGLLAFPSMFVGYFSRDLFIGLGIDFWGNSLFCFSFNLSIIDAKFMSTSTKTMPLLLSMLGGFLRFILYR 402
            VI +VGYAT+S ASHFAYW+GS  AFCTAFY I+LLSLC L EPNGSRSLLLSASEG WA+G+VLG+LA PSMF+GY SRDLFIGLG DFWGN+LFC   NLSIIDA+FMST  K  PL  S++GG   FILY+
Sbjct:    5 VILEVGYATYSNASHFAYWVGSLAAFCTAFYSIRLLSLCFLSEPNGSRSLLLSASEGGWAMGVVLGILALPSMFIGYLSRDLFIGLGTDFWGNALFCIPTNLSIIDAEFMSTDIKIFPLCCSIIGGVTSFILYK 138          
BLAST of mRNA_F-serratus_M_contig102.270.1 vs. uniprot
Match: A0A1Z4F5K4_SACJA (NADH-ubiquinone oxidoreductase chain 5 (Fragment) n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A1Z4F5K4_SACJA)

HSP 1 Score: 194 bits (492), Expect = 8.870e-60
Identity = 96/133 (72.18%), Postives = 108/133 (81.20%), Query Frame = 1
Query:    4 ISKVGYATHSPASHFAYWLGSSTAFCTAFYPIQLLSLCSLVEPNGSRSLLLSASEGCWAIGLVLGLLAFPSMFVGYFSRDLFIGLGIDFWGNSLFCFSFNLSIIDAKFMSTSTKTMPLLLSMLGGFLRFILYR 402
            I +VGYAT+S ASHFAYWLGS  AFCTAFY I+LL+LC L EPNGSRSLLLSASEG W +GLVLG+LA PSMF+GY  RDLFIGLG DFWGN+LFC   NLSIIDA+FMST  K +PL  S++GG   FILY 
Sbjct:    1 ILEVGYATYSNASHFAYWLGSLAAFCTAFYSIRLLALCFLSEPNGSRSLLLSASEGGWPMGLVLGILALPSMFIGYLGRDLFIGLGTDFWGNALFCMPSNLSIIDAEFMSTDIKLLPLCCSIIGGLASFILYN 133          
BLAST of mRNA_F-serratus_M_contig102.270.1 vs. uniprot
Match: A0A1Z4F5M6_COSCS (NADH-ubiquinone oxidoreductase chain 5 (Fragment) n=12 Tax=Laminariales TaxID=2886 RepID=A0A1Z4F5M6_COSCS)

HSP 1 Score: 194 bits (492), Expect = 1.390e-59
Identity = 96/134 (71.64%), Postives = 109/134 (81.34%), Query Frame = 1
Query:    1 VISKVGYATHSPASHFAYWLGSSTAFCTAFYPIQLLSLCSLVEPNGSRSLLLSASEGCWAIGLVLGLLAFPSMFVGYFSRDLFIGLGIDFWGNSLFCFSFNLSIIDAKFMSTSTKTMPLLLSMLGGFLRFILYR 402
            VI +VGYAT+S ASHFAYWLGS  AFCTAFY I+LL+LC L EPNGSRSLLLSA+EG W IGLVLG+LA PSMF+GY  RDLFIGLG DFWGN+LFC   NLS+IDA+FM+T  K  PL  S+ GG + FILYR
Sbjct:   15 VILEVGYATYSNASHFAYWLGSLAAFCTAFYSIRLLALCFLSEPNGSRSLLLSAAEGGWPIGLVLGILALPSMFIGYLGRDLFIGLGTDFWGNALFCMPANLSLIDAEFMATDIKIFPLCCSIAGGVVSFILYR 148          
BLAST of mRNA_F-serratus_M_contig102.270.1 vs. uniprot
Match: A0A8F0K255_9PHAE (NADH-ubiquinone oxidoreductase chain 5 n=3 Tax=Laminariales TaxID=2886 RepID=A0A8F0K255_9PHAE)

HSP 1 Score: 203 bits (517), Expect = 1.610e-59
Identity = 98/134 (73.13%), Postives = 113/134 (84.33%), Query Frame = 1
Query:    1 VISKVGYATHSPASHFAYWLGSSTAFCTAFYPIQLLSLCSLVEPNGSRSLLLSASEGCWAIGLVLGLLAFPSMFVGYFSRDLFIGLGIDFWGNSLFCFSFNLSIIDAKFMSTSTKTMPLLLSMLGGFLRFILYR 402
            VI +VGYAT+S ASHFAYWLGS  AFCTAFY I+LL+LC L EPNGSRSLLLSASEG W +G+VLG+LA PSMF+GYFSRDLFIGLG DFWGN+LFC   NLSI+DA+FMST  K  PL  S+LGGF+ F++YR
Sbjct:  404 VILEVGYATYSNASHFAYWLGSLAAFCTAFYSIRLLALCFLAEPNGSRSLLLSASEGSWPMGVVLGILAIPSMFIGYFSRDLFIGLGTDFWGNALFCLPVNLSIVDAEFMSTGIKIFPLCCSVLGGFISFVVYR 537          
BLAST of mRNA_F-serratus_M_contig102.270.1 vs. uniprot
Match: A0A8D6C180_9PHAE (NADH-ubiquinone oxidoreductase chain 5 n=2 Tax=Punctaria TaxID=27943 RepID=A0A8D6C180_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 3.170e-58
Identity = 95/134 (70.90%), Postives = 108/134 (80.60%), Query Frame = 1
Query:    1 VISKVGYATHSPASHFAYWLGSSTAFCTAFYPIQLLSLCSLVEPNGSRSLLLSASEGCWAIGLVLGLLAFPSMFVGYFSRDLFIGLGIDFWGNSLFCFSFNLSIIDAKFMSTSTKTMPLLLSMLGGFLRFILYR 402
            VI +VGYAT+S ASHFAYWLGS  AFCTAFY I+LL+LC L EPNGSRSL+LSASEG W +GLVLGLL  PS+F+GY  RDLFIGLG DFWGN+LF    NLSIIDA+FMSTS K  PL LS++GG   F +YR
Sbjct:    3 VILEVGYATYSSASHFAYWLGSFAAFCTAFYSIRLLALCFLSEPNGSRSLILSASEGSWPMGLVLGLLGVPSIFIGYLGRDLFIGLGTDFWGNALFSLPTNLSIIDAEFMSTSIKIFPLCLSIIGGLGSFYMYR 136          
BLAST of mRNA_F-serratus_M_contig102.270.1 vs. uniprot
Match: A0A8F0K0D6_9PHAE (NADH-ubiquinone oxidoreductase chain 5 n=2 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0K0D6_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 8.870e-58
Identity = 98/134 (73.13%), Postives = 112/134 (83.58%), Query Frame = 1
Query:    1 VISKVGYATHSPASHFAYWLGSSTAFCTAFYPIQLLSLCSLVEPNGSRSLLLSASEGCWAIGLVLGLLAFPSMFVGYFSRDLFIGLGIDFWGNSLFCFSFNLSIIDAKFMSTSTKTMPLLLSMLGGFLRFILYR 402
            VI +VGYA++S +SHFA+W+GS  AFCTAFY I+LL+LC L EPNGSRS LLSASEG W +GLVLGLLA PSMF+GYFSRDLFIG+G DFWGN+LFC   NLS+IDA+FMSTS K  PL  SMLGG L FILYR
Sbjct:  404 VILEVGYASYSNSSHFAFWMGSFAAFCTAFYSIRLLALCFLAEPNGSRSSLLSASEGGWRMGLVLGLLAVPSMFIGYFSRDLFIGVGTDFWGNALFCLPINLSLIDAEFMSTSIKLFPLCCSMLGGLLSFILYR 537          
BLAST of mRNA_F-serratus_M_contig102.270.1 vs. uniprot
Match: A0A1Z4F5J5_MACPY (NADH-ubiquinone oxidoreductase chain 5 (Fragment) n=1 Tax=Macrocystis pyrifera TaxID=35122 RepID=A0A1Z4F5J5_MACPY)

HSP 1 Score: 188 bits (478), Expect = 1.670e-57
Identity = 94/134 (70.15%), Postives = 110/134 (82.09%), Query Frame = 1
Query:    1 VISKVGYATHSPASHFAYWLGSSTAFCTAFYPIQLLSLCSLVEPNGSRSLLLSASEGCWAIGLVLGLLAFPSMFVGYFSRDLFIGLGIDFWGNSLFCFSFNLSIIDAKFMSTSTKTMPLLLSMLGGFLRFILYR 402
            VI +VGY+T+S +SHFAYWLGS  AFCTAFY I+LLSLC L EPNGSRSLLLSASEG   +GLVLG+LA PSMF+GY  RDLFIGLG DFWGN+LFC   NLSIIDA+FMS++ K  PL  S++GG + FILY+
Sbjct:   12 VILEVGYSTYSSSSHFAYWLGSFAAFCTAFYSIRLLSLCFLTEPNGSRSLLLSASEGGLPMGLVLGILALPSMFIGYLGRDLFIGLGTDFWGNALFCMPNNLSIIDAEFMSSNIKIFPLFCSIVGGGVSFILYK 145          
BLAST of mRNA_F-serratus_M_contig102.270.1 vs. uniprot
Match: F8UWN3_9PHAE (NADH-ubiquinone oxidoreductase chain 5 n=87 Tax=Phaeophyceae TaxID=2870 RepID=F8UWN3_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 1.780e-56
Identity = 97/134 (72.39%), Postives = 109/134 (81.34%), Query Frame = 1
Query:    1 VISKVGYATHSPASHFAYWLGSSTAFCTAFYPIQLLSLCSLVEPNGSRSLLLSASEGCWAIGLVLGLLAFPSMFVGYFSRDLFIGLGIDFWGNSLFCFSFNLSIIDAKFMSTSTKTMPLLLSMLGGFLRFILYR 402
            VI +VGYAT+S ASHFAYWLGS  AFCTAFY I+LL+LC L EPNGSRSLLLSASEG W +GLVLG+LA PSMF+GY  RDLFIGLG DFWGN+LFC   NLSIIDA+FMST  K +PL  S++GG   FILY 
Sbjct:  404 VILEVGYATYSNASHFAYWLGSLAAFCTAFYSIRLLALCFLSEPNGSRSLLLSASEGGWPMGLVLGILALPSMFIGYLGRDLFIGLGTDFWGNALFCMPSNLSIIDAEFMSTDIKLLPLCCSIIGGLASFILYN 537          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig102.270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R4QQ84_9PHAE1.420e-6886.57NADH-ubiquinone oxidoreductase chain 5 n=3 Tax=Fuc... [more]
A0A8D5Z4B2_9PHAE7.220e-6272.39NADH-ubiquinone oxidoreductase chain 5 n=3 Tax=Pun... [more]
A0A1Z4F5P8_9PHAE4.470e-6173.13NADH-ubiquinone oxidoreductase chain 5 (Fragment) ... [more]
A0A1Z4F5K4_SACJA8.870e-6072.18NADH-ubiquinone oxidoreductase chain 5 (Fragment) ... [more]
A0A1Z4F5M6_COSCS1.390e-5971.64NADH-ubiquinone oxidoreductase chain 5 (Fragment) ... [more]
A0A8F0K255_9PHAE1.610e-5973.13NADH-ubiquinone oxidoreductase chain 5 n=3 Tax=Lam... [more]
A0A8D6C180_9PHAE3.170e-5870.90NADH-ubiquinone oxidoreductase chain 5 n=2 Tax=Pun... [more]
A0A8F0K0D6_9PHAE8.870e-5873.13NADH-ubiquinone oxidoreductase chain 5 n=2 Tax=Cho... [more]
A0A1Z4F5J5_MACPY1.670e-5770.15NADH-ubiquinone oxidoreductase chain 5 (Fragment) ... [more]
F8UWN3_9PHAE1.780e-5672.39NADH-ubiquinone oxidoreductase chain 5 n=87 Tax=Ph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig102contigF-serratus_M_contig102:643983..644396 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score91.3
Seed ortholog evalue3.9e-16
Seed eggNOG ortholog70448.Q0P3F5
Preferred namenad5
KEGG rclassRC00061
KEGG koko:K03883
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko05012,map00190,map01100,map04714,map04723,map05012
KEGG ModuleM00142
Hectar predicted targeting categoryother localisation
EggNOG free text desc.NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
EggNOG OGs34KBF@3041,37NNE@33090,COG1007@1,KOG4668@2759
EC1.6.5.3
COG Functional cat.C
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03029
Exons1
Model size414
Cds size414
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928821.642257-CDS-F-serratus_M_contig102:643982..6443961622928821.642257-CDS-F-serratus_M_contig102:643982..644396Fucus serratus maleCDSF-serratus_M_contig102 643983..644396 +
1690962587.908904-CDS-F-serratus_M_contig102:643982..6443961690962587.908904-CDS-F-serratus_M_contig102:643982..644396Fucus serratus maleCDSF-serratus_M_contig102 643983..644396 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig102.270.1prot_F-serratus_M_contig102.270.1Fucus serratus malepolypeptideF-serratus_M_contig102 643983..644396 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig102.270.1

>prot_F-serratus_M_contig102.270.1 ID=prot_F-serratus_M_contig102.270.1|Name=mRNA_F-serratus_M_contig102.270.1|organism=Fucus serratus male|type=polypeptide|length=138bp
VISKVGYATHSPASHFAYWLGSSTAFCTAFYPIQLLSLCSLVEPNGSRSL
LLSASEGCWAIGLVLGLLAFPSMFVGYFSRDLFIGLGIDFWGNSLFCFSF
NLSIIDAKFMSTSTKTMPLLLSMLGGFLRFILYRIIM*
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mRNA from alignment at F-serratus_M_contig102:643983..644396+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig102.270.1 ID=mRNA_F-serratus_M_contig102.270.1|Name=mRNA_F-serratus_M_contig102.270.1|organism=Fucus serratus male|type=mRNA|length=414bp|location=Sequence derived from alignment at F-serratus_M_contig102:643983..644396+ (Fucus serratus male)
GTCATTTCGAAGGTAGGGTATGCCACTCATTCGCCAGCGTCCCATTTTGC TTATTGGTTAGGAAGTTCCACGGCTTTTTGTACGGCTTTTTATCCTATCC AATTACTGTCTTTATGCTCTCTGGTAGAACCAAATGGAAGTCGTTCGTTG CTTCTTTCAGCGTCTGAGGGTTGTTGGGCTATCGGTTTGGTTTTAGGGTT ATTGGCATTTCCTAGTATGTTTGTTGGGTACTTTAGTCGTGATTTATTTA TTGGGTTAGGTATAGATTTTTGGGGAAATTCTCTTTTTTGCTTCTCATTT AATTTAAGCATAATCGATGCAAAGTTTATGTCTACTTCCACAAAAACTAT GCCATTACTACTAAGTATGCTAGGAGGGTTTCTTCGTTTTATCTTATATC GTATTATAATGTAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig102:643983..644396+

>mRNA_F-serratus_M_contig102.270.1 ID=mRNA_F-serratus_M_contig102.270.1|Name=mRNA_F-serratus_M_contig102.270.1|organism=Fucus serratus male|type=CDS|length=828bp|location=Sequence derived from alignment at F-serratus_M_contig102:643983..644396+ (Fucus serratus male)
GTCATTTCGAAGGTAGGGTATGCCACTCATTCGCCAGCGTCCCATTTTGC
TTATTGGTTAGGAAGTTCCACGGCTTTTTGTACGGCTTTTTATCCTATCC
AATTACTGTCTTTATGCTCTCTGGTAGAACCAAATGGAAGTCGTTCGTTG
CTTCTTTCAGCGTCTGAGGGTTGTTGGGCTATCGGTTTGGTTTTAGGGTT
ATTGGCATTTCCTAGTATGTTTGTTGGGTACTTTAGTCGTGATTTATTTA
TTGGGTTAGGTATAGATTTTTGGGGAAATTCTCTTTTTTGCTTCTCATTT
AATTTAAGCATAATCGATGCAAAGTTTATGTCTACTTCCACAAAAACTAT
GCCATTACTACTAAGTATGCTAGGAGGGTTTCTTCGTTTTATCTTATATC
GTATTATAATGTAAGTCATTTCGAAGGTAGGGTATGCCACTCATTCGCCA
GCGTCCCATTTTGCTTATTGGTTAGGAAGTTCCACGGCTTTTTGTACGGC
TTTTTATCCTATCCAATTACTGTCTTTATGCTCTCTGGTAGAACCAAATG
GAAGTCGTTCGTTGCTTCTTTCAGCGTCTGAGGGTTGTTGGGCTATCGGT
TTGGTTTTAGGGTTATTGGCATTTCCTAGTATGTTTGTTGGGTACTTTAG
TCGTGATTTATTTATTGGGTTAGGTATAGATTTTTGGGGAAATTCTCTTT
TTTGCTTCTCATTTAATTTAAGCATAATCGATGCAAAGTTTATGTCTACT
TCCACAAAAACTATGCCATTACTACTAAGTATGCTAGGAGGGTTTCTTCG
TTTTATCTTATATCGTATTATAATGTAA
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