mRNA_F-serratus_M_contig102.268.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig102.268.1 vs. uniprot
Match: D0ND72_PHYIT (Uncharacterized protein n=14 Tax=Peronosporaceae TaxID=4777 RepID=D0ND72_PHYIT) HSP 1 Score: 240 bits (612), Expect = 1.450e-65 Identity = 130/344 (37.79%), Postives = 205/344 (59.59%), Query Frame = 3 Query: 1047 IKDHRAKQLLVVPNDDKFVAVAAPEAFSRHSGTCMILGGQGAYGNGTSKSYELKLGNFLRIGSVGVVVSEIHTGPGGEHKC-LSWEELTCLKGDIAAIQKDLVTIEA-LTAQEENAEAD-----KMVGSLQNGAGGIVNTRMCYMCFDDVDEASNPLVAPCECKGDTRYVHLNCLQKWHTTTSENKVCVVLNNKGVRVCTVCKSPYKASVRLPGGESISLFQSPLPPPYICFMVVTRHQNNEELFSTKYQLSFNSVMNRGGTASTKDLVVGRSRQCDMVLDYRTVSTRHASVKFQGGRFYFSDLMSSNGSYLYLREPLQLPYGETVFLKWGSNVVSLKAKRSIR 2057 I+D RA L + ++D + + + E FS H+G C ILG + G + +++G+ +R GSVG++V+EI TG G + LS E+ L + + L +++ + +EN +A K SLQ + + CY+C+D+ ++ NPL+APC+C GDT+Y+HLNCL++W+T +N++C VL+ R C++CK+PY + RLP G+ +SL L PP I F VVT+H ++ ST+YQLS+ +M+ + L+VGRS QCD+VL YRTVST HA + + G F+ D SSNG+ Y+ PL L +++ +K+G V+S+K + IR Sbjct: 78 IEDPRAPCLNIDYSNDAYRLLPSSEKFSAHTGVCQILGTKCIRGG----KHRIRVGDIIRFGSVGLLVTEIDTGGIGPNDATLSPSEVNSLIQRVVCHDEALADVDSGMDTDDENGDASGNDESKPRSSLQRQSTSAI----CYVCYDETED-DNPLIAPCKCSGDTKYIHLNCLKRWNTNGEKNEICTVLDESNARTCSICKAPYPSKTRLPNGKVLSLLPDRLNPPCIMFQVVTKHSSSTLNLSTRYQLSYKMLMDND---IHRPLMVGRSSQCDLVLKYRTVSTIHAEIHYSKGEFFLKDAGSSNGTLRYIYRPLTLHNNQSLHVKFGRTVLSIKPTKKIR 409
BLAST of mRNA_F-serratus_M_contig102.268.1 vs. uniprot
Match: A0A3F2RIP8_9STRA (Uncharacterized protein n=7 Tax=Peronosporaceae TaxID=4777 RepID=A0A3F2RIP8_9STRA) HSP 1 Score: 239 bits (610), Expect = 3.000e-65 Identity = 131/344 (38.08%), Postives = 203/344 (59.01%), Query Frame = 3 Query: 1047 IKDHRAKQLLVVPNDDKFVAVAAPEAFSRHSGTCMILGGQGAYGNGTSKSYELKLGNFLRIGSVGVVVSEIHTGPGGEH-KCLSWEELTCLKGDIAAIQKDLVTIEA-LTAQEENAEAD-----KMVGSLQNGAGGIVNTRMCYMCFDDVDEASNPLVAPCECKGDTRYVHLNCLQKWHTTTSENKVCVVLNNKGVRVCTVCKSPYKASVRLPGGESISLFQSPLPPPYICFMVVTRHQNNEELFSTKYQLSFNSVMNRGGTASTKDLVVGRSRQCDMVLDYRTVSTRHASVKFQGGRFYFSDLMSSNGSYLYLREPLQLPYGETVFLKWGSNVVSLKAKRSIR 2057 I+D RA L + ++D + + + E FS H+G C ILG + G + +++G+ +R GSVG++V+EI TG G + LS E+ L + + L +++ + +EN +A K SLQ + + CY+C+D+ E NPL+APC+C GDT+Y+HLNCL++W+T +N++C VL+ R C++CK+PY + RLP G+ +SL L PP I F VVT+H + ST+YQLS+ +M+ + L+VGRS QCD+VL YRTVST HA + + G F+ D SSNG+ Y+ PL L +++ +K+G V+S+K + IR Sbjct: 82 IEDPRAPCLNIDYSNDAYRLLPSSEKFSAHTGVCQILGTKCIRGG----KHRIRVGDIIRFGSVGLLVTEIDTGGVGPNDSTLSSSEVNSLIQRVVCHDEALADVDSGMDTDDENGDASGNDESKPRSSLQRQSTSAI----CYVCYDE-SEDDNPLIAPCKCSGDTKYIHLNCLKRWNTNGEKNEICTVLDESNARTCSICKAPYPSKTRLPNGKMLSLLPDRLNPPCIMFQVVTKHSSATLNLSTRYQLSYKMLMDND---IHRPLMVGRSSQCDLVLKYRTVSTIHAEIHYAKGEFFLKDAGSSNGTLRYIYRPLTLHNNQSLHVKFGRTVLSIKPTKKIR 413
BLAST of mRNA_F-serratus_M_contig102.268.1 vs. uniprot
Match: A0A2P4X1K8_9STRA (E3 ubiquitin-protein ligase march6 n=3 Tax=Peronosporaceae TaxID=4777 RepID=A0A2P4X1K8_9STRA) HSP 1 Score: 239 bits (610), Expect = 3.080e-65 Identity = 131/344 (38.08%), Postives = 204/344 (59.30%), Query Frame = 3 Query: 1047 IKDHRAKQLLVVPNDDKFVAVAAPEAFSRHSGTCMILGGQGAYGNGTSKSYELKLGNFLRIGSVGVVVSEIHTGPGGEHKC-LSWEELTCLKGDIAAIQKDLVTIEA-LTAQEENAEAD-----KMVGSLQNGAGGIVNTRMCYMCFDDVDEASNPLVAPCECKGDTRYVHLNCLQKWHTTTSENKVCVVLNNKGVRVCTVCKSPYKASVRLPGGESISLFQSPLPPPYICFMVVTRHQNNEELFSTKYQLSFNSVMNRGGTASTKDLVVGRSRQCDMVLDYRTVSTRHASVKFQGGRFYFSDLMSSNGSYLYLREPLQLPYGETVFLKWGSNVVSLKAKRSIR 2057 I+D RA L + ++D + + + E FS H+G C ILG + G + +++G+ +R GSVG++V+EI TG G + LS E+ L + + L +++ + +EN +A K SLQ + + CY+C+D+ E NPL+APC+C GDT+Y+HLNCL++W+T +N++C VL+ R C++CK+PY + RLP G+ +SL L PP I F VVT+H ++ ST+YQLS+ +M+ + L+VGRS QCD+VL YRTVST HA + + G F+ D SSNG+ Y+ PL L +++ +K+G V+S+K + IR Sbjct: 77 IEDPRAPCLNIDYSNDAYRLLPSSEKFSAHTGVCQILGTKCIRGG----KHRVRVGDIIRFGSVGLLVTEIDTGGIGPNDATLSPSEVNSLIQRVVCHDEALADVDSGMDTDDENGDASGNDESKPRASLQRQSTSAI----CYVCYDE-SEDDNPLIAPCKCSGDTKYIHLNCLKRWNTNGEKNEICTVLDESNARTCSICKAPYPSKTRLPNGKVLSLLPDRLNPPCIMFQVVTKHSSSTLNLSTRYQLSYKMLMDND---IHRPLMVGRSSQCDLVLKYRTVSTIHAEIHYSKGEFFLKDAGSSNGTLRYIYRPLTLHNNQSLHVKFGRTVLSIKPTKKIR 408
BLAST of mRNA_F-serratus_M_contig102.268.1 vs. uniprot
Match: A0A2D4C2I9_PYTIN (Uncharacterized protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C2I9_PYTIN) HSP 1 Score: 237 bits (605), Expect = 9.720e-65 Identity = 130/347 (37.46%), Postives = 203/347 (58.50%), Query Frame = 3 Query: 1038 RHHIKDHRAKQLLVVPNDDKFVAVAAPEAFSRHSGTCMILGGQGAYGNGTSKSYELKLGNFLRIGSVGVVVSEIHT-GPGGEHKCLSWEELTCLKGDIAAIQKDLVTIEA-LTAQEENAEAD-----KMVGSLQNGAGGIVNTRMCYMCFDDVDEASNPLVAPCECKGDTRYVHLNCLQKWHTTTSENKVCVVLNNKGVRVCTVCKSPYKASVRLPGGESISLFQSPLPPPYICFMVVTRHQNNEELFSTKYQLSFNSVMNRGGTASTKDLVVGRSRQCDMVLDYRTVSTRHASVKFQGGRFYFSDLMSSNGSYLYLREPLQLPYGETVFLKWGSNVVSLKAKRSIR 2057 R I+D RA L + +++ + + + E FS H+G C ILG + G + +K+G+ +R GSVG++V+EI T G G LS E+ L + + + +++ L ++N +A K SLQ + V CY+C+D+ E NPL++PC+C GDT+Y+HLNCL++W+T +N++C VL+ R C++CK+PY + +LP G+ +SL L PP I F VVT+H ++ ST+YQLS+ ++ + L+VGRS QCD+VL YRTVST HA + + G FY D SSNG+ Y+ PL L +++ +K+G V+S+K + IR Sbjct: 77 RIFIEDPRAPCLTIDYSNEAYRLMPSSEKFSAHTGVCQILGTKCIRGG----KHRIKVGDIIRFGSVGLLVTEIDTAGMGPNDASLSTAEIXSLIQRVICHDEAVADVDSGLDTDDDNGDASGNDESKPRASLQRQSTSAV----CYVCYDE-SEDDNPLISPCKCAGDTKYIHLNCLKRWNTNGEKNEICAVLDESNARTCSICKAPYPSKTKLPNGQYVSLMPDRLNPPSIMFQVVTKHSSSTLNLSTRYQLSYKMLLEND---IHRPLMVGRSSQCDLVLKYRTVSTIHAEIHYAKGEFYIKDAGSSNGTLRYIYRPLTLQNNQSLHVKFGRTVLSIKPTKKIR 411
BLAST of mRNA_F-serratus_M_contig102.268.1 vs. uniprot
Match: A0A8K1CS87_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CS87_PYTOL) HSP 1 Score: 235 bits (599), Expect = 1.100e-63 Identity = 129/349 (36.96%), Postives = 199/349 (57.02%), Query Frame = 3 Query: 1038 RHHIKDHRAKQLLVVPNDDKFVAVAAPEAFSRHSGTCMILGGQGAYGNGTSKSYELKLGNFLRIGSVGVVVSEIHT-GPGGEHKCLSWEELTCLKGDIAAIQKDLVTIEALTAQEENAEADKMVGSLQNG--------AGGIVNTRMCYMCFDDVDEASNPLVAPCECKGDTRYVHLNCLQKWHTTTSENKVCVVLNNKGVRVCTVCKSPYKASVRLPGGESISLFQSPLPPPYICFMVVTRHQNNEELFSTKYQLSFNSVMNRGGTASTKDLVVGRSRQCDMVLDYRTVSTRHASVKFQGGRFYFSDLMSSNGSYLYLREPLQLPYGETVFLKWGSNVVSLKAKRSIR 2057 R I+D RA L + ++ + + + E FS H+G C ILG + G + +++G+ +R GSVG++V+EI T G G LS E+ L IQ+ + EA+ + + D G A + MCY+C+D+ +E NPL++PC+C GDT+Y+HLNCL++W+T +N++C VL+ R C++CK+PY + RLP G+ +SL L PP I F VVT+H ++ ST+YQLS+ ++ + L+VGRS QCD+VL YRTVST HA + + G F+ D SSNG+ Y+ PL L +++ +K+G V+S+K + IR Sbjct: 84 RIFIEDPRAPCLTIDYTNEAYRLMPSSEKFSAHTGVCQILGTKCIRGG----KHRIRVGDIIRFGSVGLLVTEIDTAGIGPNDATLSPSEINSL------IQRVICHDEAIADVDSGLDTDDDAGDASGNDESKPRASAQRQSTSAMCYVCYDESEEG-NPLISPCKCAGDTKYIHLNCLKRWNTNGEKNEICTVLDESNARTCSICKAPYPSKTRLPNGKFVSLLPDRLNPPTIMFQVVTKHSSSTLNLSTRYQLSYKMLLEND---IHRPLMVGRSSQCDLVLKYRTVSTIHAEIHYAKGEFFLKDAGSSNGTLRYIYRPLSLHNNQSLHVKFGRTVLSIKPTKKIR 418 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig102.268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pages
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig102.268.1 >prot_F-serratus_M_contig102.268.1 ID=prot_F-serratus_M_contig102.268.1|Name=mRNA_F-serratus_M_contig102.268.1|organism=Fucus serratus male|type=polypeptide|length=684bp MGNKAAGGPFQLEVPSGEAPGFQVGAMDGNARSEGCVLEVQQQGGAGEASback to top mRNA from alignment at F-serratus_M_contig102:285795..296558- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig102.268.1 ID=mRNA_F-serratus_M_contig102.268.1|Name=mRNA_F-serratus_M_contig102.268.1|organism=Fucus serratus male|type=mRNA|length=10764bp|location=Sequence derived from alignment at F-serratus_M_contig102:285795..296558- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig102:285795..296558- >mRNA_F-serratus_M_contig102.268.1 ID=mRNA_F-serratus_M_contig102.268.1|Name=mRNA_F-serratus_M_contig102.268.1|organism=Fucus serratus male|type=CDS|length=4104bp|location=Sequence derived from alignment at F-serratus_M_contig102:285795..296558- (Fucus serratus male)back to top |