mRNA_F-serratus_M_contig102.266.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig102.266.1
Unique NamemRNA_F-serratus_M_contig102.266.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig102.266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig102contigF-serratus_M_contig102:229291..232019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size982
Cds size585
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig102.266.1prot_F-serratus_M_contig102.266.1Fucus serratus malepolypeptideF-serratus_M_contig102 229446..231777 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928818.5973325-UTR-F-serratus_M_contig102:229290..2294451622928818.5973325-UTR-F-serratus_M_contig102:229290..229445Fucus serratus maleUTRF-serratus_M_contig102 229291..229445 +
1690962586.4217637-UTR-F-serratus_M_contig102:229290..2294451690962586.4217637-UTR-F-serratus_M_contig102:229290..229445Fucus serratus maleUTRF-serratus_M_contig102 229291..229445 +
1622928818.6738594-UTR-F-serratus_M_contig102:231777..2320191622928818.6738594-UTR-F-serratus_M_contig102:231777..232019Fucus serratus maleUTRF-serratus_M_contig102 231778..232019 +
1690962586.4757605-UTR-F-serratus_M_contig102:231777..2320191690962586.4757605-UTR-F-serratus_M_contig102:231777..232019Fucus serratus maleUTRF-serratus_M_contig102 231778..232019 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928818.6142652-CDS-F-serratus_M_contig102:229445..2296541622928818.6142652-CDS-F-serratus_M_contig102:229445..229654Fucus serratus maleCDSF-serratus_M_contig102 229446..229654 +
1690962586.4320164-CDS-F-serratus_M_contig102:229445..2296541690962586.4320164-CDS-F-serratus_M_contig102:229445..229654Fucus serratus maleCDSF-serratus_M_contig102 229446..229654 +
1622928818.62773-CDS-F-serratus_M_contig102:229924..2300001622928818.62773-CDS-F-serratus_M_contig102:229924..230000Fucus serratus maleCDSF-serratus_M_contig102 229925..230000 +
1690962586.4412456-CDS-F-serratus_M_contig102:229924..2300001690962586.4412456-CDS-F-serratus_M_contig102:229924..230000Fucus serratus maleCDSF-serratus_M_contig102 229925..230000 +
1622928818.6417332-CDS-F-serratus_M_contig102:230835..2309361622928818.6417332-CDS-F-serratus_M_contig102:230835..230936Fucus serratus maleCDSF-serratus_M_contig102 230836..230936 +
1690962586.4503033-CDS-F-serratus_M_contig102:230835..2309361690962586.4503033-CDS-F-serratus_M_contig102:230835..230936Fucus serratus maleCDSF-serratus_M_contig102 230836..230936 +
1622928818.6546888-CDS-F-serratus_M_contig102:231578..2317771622928818.6546888-CDS-F-serratus_M_contig102:231578..231777Fucus serratus maleCDSF-serratus_M_contig102 231579..231777 +
1690962586.4592094-CDS-F-serratus_M_contig102:231578..2317771690962586.4592094-CDS-F-serratus_M_contig102:231578..231777Fucus serratus maleCDSF-serratus_M_contig102 231579..231777 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig102.266.1

>prot_F-serratus_M_contig102.266.1 ID=prot_F-serratus_M_contig102.266.1|Name=mRNA_F-serratus_M_contig102.266.1|organism=Fucus serratus male|type=polypeptide|length=195bp
MDFFEPPGSKIIERRKPQGHHNFPSWKDNSTFVSPRPASPRSKPRHQPVR
RSLRAVRMKISPGTEDLSASLCTRSTSRNAGFWVPTSQQEDPLLQKIIVA
KDLTLERPPFRDCYLYQYGVLPDQYLVPRADHAVSLHVSDKMDAKLPRSL
VQMVASKSNKKGRQLSDRLVVSAWDGTMRKVTAPLLWRTREPLF*
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mRNA from alignment at F-serratus_M_contig102:229291..232019+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig102.266.1 ID=mRNA_F-serratus_M_contig102.266.1|Name=mRNA_F-serratus_M_contig102.266.1|organism=Fucus serratus male|type=mRNA|length=2729bp|location=Sequence derived from alignment at F-serratus_M_contig102:229291..232019+ (Fucus serratus male)
CTGTAGCCTGTAGCCTGTAGCCTTTAGTCGAACTTCTGACTCTTCGGGCC
CGGTAGCACCTCTTCTTGGATGGCCTGTAGCCCGTAGCAGCTTGGTTTCA
AAGAAAACGAGTGCTTGGAACGTACTGCTGTTGTATCCTTCTGCCGTGTC
TCAGTATGGATTTCTTCGAGCCTCCTGGTTCCAAAATCATCGAACGGAGG
AAGCCGCAAGGGCACCATAACTTTCCATCTTGGAAAGATAACTCGACTTT
CGTCTCGCCCCGGCCGGCTTCTCCGCGTAGTAAACCCCGACATCAACCTG
TACGGCGATCTCTTCGAGCTGTCCGGATGAAGATATCACCAGGGACGGAA
GATCTGTCGGCGAGGTTTGAGTGGGAGTTCAAACGAAGGAAACGATTCAT
CAATATTCAGCTCTAGCCATTCAGAGTAGCCTAGGCCTTTTGTCACGGAC
TCGGCCACTAATACTGTACTGAGTTCAGTCGGAAGGTCCAGATGATACTG
TAAAGACCAAAGCATAGAGAAACAAAATCTCAGCTCACGTAATACCTTGT
CCAAGTTTTAATACAGAGTAGCTCTATACAATCATAAGTACTTGTACAAC
TGCGCTGAAGTTAATCTCACGCTCGATATTGTAGTCTCTGTACAAGGTCG
ACCAGCCGTAACGCGGGCTTCTGGGTACCAACATCCCAGCAAGAAGATCC
GCTCCTTCAGGTGAAGAGACCGCCACCCAAATCACCTGAGCATTACTAAT
AGTGCTAAGTGTAAGGCGATTGATGCTGAAAACATGACGTGCTTTTCCAA
TCGTTTAGAAGGCAACGTCAAAACTCCGAAGGCAGTACGGGCATCGACGT
TGATACAACAAGGTTTACTTCGTCGCTTCTTTTCCATGTTCCTTTCCCCG
ACGTTGACACATATATGGCAACTCCCCCCTCTTAGCAAAAATGACACATT
GACCTCGTCTGGTGATCATCATACAGCTCATGCTGTATAAGTGTTTCATT
CAGAGTTTTATTTTCCCCTTTCGCCGACCACGGCCCTCCTTCTCTTTTGC
GTCGTCACGGTCGTAAGTGTAATATTAAAACAATATTAATATGTTCGGCA
GTCAACGTCATATGAGTTTTTGGGGGTGTCGCAGAGGTGCCCATTGGGTC
TATAAGCACAATACACTATCCATTTATATACTGGTAACCCGCTGCTATTT
CATCCAAGTGAAAAGAAGGTATACAATGCCATATAACGGCAATGTAATGC
CCCCGTATGATTACAGCACGTGGAGTTGCAGTACTGTATAAAATGCCCAC
GAGCATTGTGCAATAGCCCTTTATAGTACCAGGTAGCTCACTCGAGGCTC
GTCATAATTAAGCCCTTGGATTTAACAGTCGAGGCGGTCATAGAAGATTA
CAAAATAAAATGGATCAGCGTGGTTGAGTTCCTTTATCGCTTTGTACTTT
TTTAGCTAGTAGGGCGTGCTTCCGTCAAAATCTTAGCAGCAATTTCTGAA
TCGCGGGACAACCAGACTTCTGCGCTTTTTCTGCACATCGCACAGAAAAT
AATTGTCGCAAAGGATCTCACGCTGGAGCGGCCGCCCTTCAGAGATTGCT
ACCTCTACCAATACGGGGTTCTTCCAGATCAGTACCTTGTCCCGAGGTTG
GTCTTGTACGTTTTGTAGACATTACGCCGCCCTTGTCTCGCACGATCCCA
TTTACATTATACAAGTACGCAGGTGCAATAGTGATTGAACTATGGCTTGA
TGTTTTGTAAAAAAATCCTAATGTACTGTAGGAAGCGCCTTCTGAGGTTC
GTTAGTTAAAAAAATCGATCCCACGAACCGTTGTTGTCAGCATCGTCAAC
ATCGTCCATGATGAGCCGTATTCTCTTGGCAGGACTTTAACCCAGGTAAT
GACCCCCCCCCCCCGTTTGACTGCACGAGTCTGAACCACCGACCGATGGA
GACATATAAGTATACCAAGCAATATGAATAAGATGCTTGCTCTGTGTAAG
CTACGCCAACTTGCTTCAGACAGCACGTAGGGGATTTTCTTGGAGAAGGT
TGCAAAGGGAAGAAAGTGCGTTCCATGAAGAAATGGGAACGACTTTTCAC
GCGTTAATTTCTGGGCAAACATCTCTTAACGACAGAGACAGTGAAATATC
ACAACATTCCTGCGAGTGATATAGTGGATGGCACACGGTTTACATTCATC
ACTTCTTAGTCCTTGCCTTTTCATTGATCGATACCAAAAAATAGTAAAGT
GCTCAGTTGATTATGTTTTTGTTTTTCGTCGAAAGCAGGGCCGATCACGC
AGTAAGTCTACATGTATCTGACAAGATGGACGCTAAGCTCCCCCGATCGC
TCGTCCAGATGGTGGCGTCAAAGTCAAATAAGAAAGGAAGGCAGCTATCC
GATCGACTGGTAGTTTCCGCATGGGATGGAACAATGAGAAAAGTGACTGC
ACCATTACTCTGGCGAACCCGAGAGCCCTTGTTCTGACTTTTGAAACGGT
TGCCATATGAGGCGAAGGTTCCTGAAGAGTAAAAGAGATTAAGCATGTTG
CTAGTTTCGACCCGTTTGGACAATTCTGATTTGATAGAGTCGACATGTTA
AGTATTGTCGACGTCTAGTACAGCTGCAGTATCATGGCAGCGGCAAAACC
ACGTATTGAATGCCTGGGTGCATGATATGTCGAGTACATTTTGCAGTTCG
AACTCGCATGCTTTATCTGCGCGAGGCCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig102:229291..232019+

>mRNA_F-serratus_M_contig102.266.1 ID=mRNA_F-serratus_M_contig102.266.1|Name=mRNA_F-serratus_M_contig102.266.1|organism=Fucus serratus male|type=CDS|length=1170bp|location=Sequence derived from alignment at F-serratus_M_contig102:229291..232019+ (Fucus serratus male)
ATGGATTTCTTCGAGCCTCCTGGTTCCAAAATCATCGAACGGAGGAAGCC
GCAAGGGCACCATAACTTTCCATCTTGGAAAGATAACTCGACTTTCGTCT
CGCCCCGGCCGGCTTCTCCGCGTAGTAAACCCCGACATCAACCTGTACGG
CGATCTCTTCGAGCTGTCCGGATGAAGATATCACCAGGGACGGAAGATCT
GTCGGCGAGATGGATTTCTTCGAGCCTCCTGGTTCCAAAATCATCGAACG
GAGGAAGCCGCAAGGGCACCATAACTTTCCATCTTGGAAAGATAACTCGA
CTTTCGTCTCGCCCCGGCCGGCTTCTCCGCGTAGTAAACCCCGACATCAA
CCTGTACGGCGATCTCTTCGAGCTGTCCGGATGAAGATATCACCAGGGAC
GGAAGATCTGTCGGCGAGTCTCTGTACAAGGTCGACCAGCCGTAACGCGG
GCTTCTGGGTACCAACATCCCAGCAAGAAGATCCGCTCCTTCAGTCTCTG
TACAAGGTCGACCAGCCGTAACGCGGGCTTCTGGGTACCAACATCCCAGC
AAGAAGATCCGCTCCTTCAGAAAATAATTGTCGCAAAGGATCTCACGCTG
GAGCGGCCGCCCTTCAGAGATTGCTACCTCTACCAATACGGGGTTCTTCC
AGATCAGTACCTTGTCCCGAGAAAATAATTGTCGCAAAGGATCTCACGCT
GGAGCGGCCGCCCTTCAGAGATTGCTACCTCTACCAATACGGGGTTCTTC
CAGATCAGTACCTTGTCCCGAGGGCCGATCACGCAGTAAGTCTACATGTA
TCTGACAAGATGGACGCTAAGCTCCCCCGATCGCTCGTCCAGATGGTGGC
GTCAAAGTCAAATAAGAAAGGAAGGCAGCTATCCGATCGACTGGTAGTTT
CCGCATGGGATGGAACAATGAGAAAAGTGACTGCACCATTACTCTGGCGA
ACCCGAGAGCCCTTGTTCTGAGGCCGATCACGCAGTAAGTCTACATGTAT
CTGACAAGATGGACGCTAAGCTCCCCCGATCGCTCGTCCAGATGGTGGCG
TCAAAGTCAAATAAGAAAGGAAGGCAGCTATCCGATCGACTGGTAGTTTC
CGCATGGGATGGAACAATGAGAAAAGTGACTGCACCATTACTCTGGCGAA
CCCGAGAGCCCTTGTTCTGA
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