mRNA_F-serratus_M_contig102.259.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig102.259.1
Unique NamemRNA_F-serratus_M_contig102.259.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig102.259.1 vs. uniprot
Match: A0A840I6P4_9ACTN (Alpha-tubulin suppressor-like RCC1 family protein/outer membrane protein OmpA-like peptidoglycan-associated protein n=1 Tax=Conexibacter arvalis TaxID=912552 RepID=A0A840I6P4_9ACTN)

HSP 1 Score: 85.1 bits (209), Expect = 1.410e-16
Identity = 41/80 (51.25%), Postives = 49/80 (61.25%), Query Frame = 2 
Query:  107 GEVADEIALGREHTCVLLSSGDVKCFGYNDKGQLLIGQGDTVSRGELPNQLGDDLPAIDLGTGASAVQVTVGCDHTCVLL 346
            G  A  IA G  H C LL  G VKC+G N  GQL  GQGD  +RG  P +LGD LP +DLG+GA+A  +  G  H+C LL
Sbjct:  577 GRTATAIAAGSSHACALLDDGSVKCWGANASGQL--GQGDRAARGGQPGELGDALPPVDLGSGATATAIATGSHHSCALL 654
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BLAST of mRNA_F-serratus_M_contig102.259.1 vs. uniprot
Match: A0A848L585_9DELT (Uncharacterized protein n=1 Tax=Pyxidicoccus fallax TaxID=394095 RepID=A0A848L585_9DELT)

HSP 1 Score: 84.7 bits (208), Expect = 1.600e-16
Identity = 44/87 (50.57%), Postives = 55/87 (63.22%), Query Frame = 2 
Query:   89 STSAREGEVADEIALGREHTCVLLSSGDVKCFGYNDKGQLLIGQGDTVSRGELPNQLGDDLPAIDLGTGASAVQVTVGCDHTCVLLD 349
            S S   G  A  +A G EHTC +L +G VKC+G ND GQL  G G   +RG+ P +LGD LPA+DLG G +AV +  G  HTC +LD
Sbjct:  207 SVSLGTGRTAVLLAAGHEHTCAVLDTGAVKCWGANDYGQL--GLGALGNRGDEPGELGDALPAVDLGKGRTAVALAAGNRHTCAVLD 291
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BLAST of mRNA_F-serratus_M_contig102.259.1 vs. uniprot
Match: A0A830HVT6_9CHLO (EGF-like domain-containing protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HVT6_9CHLO)

HSP 1 Score: 84.7 bits (208), Expect = 1.750e-16
Identity = 38/81 (46.91%), Postives = 53/81 (65.43%), Query Frame = 2 
Query:  107 GEVADEIALGREHTCVLLSSGDVKCFGYNDKGQLLIGQGDTVSRGELPNQLGDDLPAIDLGTGASAVQVTVGCDHTCVLLD 349
            G    +I++   HTC +L    VKC+GYN  GQL  G GDT +RG+ PN++GD+LP +D+GTG +  Q+ V   HTC +LD
Sbjct:  319 GRTVKQISVSGSHTCAILDDDKVKCWGYNYVGQL--GYGDTTTRGDGPNEMGDNLPYVDVGTGRTVKQIEVSGGHTCAILD 397
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BLAST of mRNA_F-serratus_M_contig102.259.1 vs. uniprot
Match: A0A7S2NCN7_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2NCN7_9DINO)

HSP 1 Score: 84.3 bits (207), Expect = 1.760e-16
Identity = 41/81 (50.62%), Postives = 55/81 (67.90%), Query Frame = 2 
Query:  116 ADEIALGREHTCVLLSSGDVKCFGYNDKGQLLIGQGD---TVSRGELPNQLGDDLPAIDLGTGASAVQVTVGCDHTCVLLD 349
            A ++ +GR + C LL +G VKC+G N +GQL  GQGD      RG+ PN++G +LPAIDLG G +AVQ+  G DH C +LD
Sbjct:  168 ATQLTMGRNYVCALLDNGQVKCWGANARGQL--GQGDGGFLADRGDDPNEMGCNLPAIDLGAGRTAVQIAAGEDHVCAVLD 246
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BLAST of mRNA_F-serratus_M_contig102.259.1 vs. uniprot
Match: A0A2E7LRF1_9EURY (Uncharacterized protein (Fragment) n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E7LRF1_9EURY)

HSP 1 Score: 84.7 bits (208), Expect = 2.000e-16
Identity = 40/78 (51.28%), Postives = 53/78 (67.95%), Query Frame = 2 
Query:  116 ADEIALGREHTCVLLSSGDVKCFGYNDKGQLLIGQGDTVSRGELPNQLGDDLPAIDLGTGASAVQVTVGCDHTCVLLD 349
            A EIA G+ H+C LL  G VKC+G N  GQL  G G+T +RG+  N++GDDL A+DLGTG +A+ +  G   TC +LD
Sbjct:  502 ATEIATGQHHSCALLDDGSVKCWGLNSYGQL--GIGNTSTRGDGANEMGDDLVAVDLGTGRTAISIEAGATFTCAILD 577
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig102.259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A840I6P4_9ACTN1.410e-1651.25Alpha-tubulin suppressor-like RCC1 family protein/... [more]
A0A848L585_9DELT1.600e-1650.57Uncharacterized protein n=1 Tax=Pyxidicoccus falla... [more]
A0A830HVT6_9CHLO1.750e-1646.91EGF-like domain-containing protein n=1 Tax=Pycnoco... [more]
A0A7S2NCN7_9DINO1.760e-1650.62Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A2E7LRF1_9EURY2.000e-1651.28Uncharacterized protein (Fragment) n=1 Tax=Euryarc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig102contigF-serratus_M_contig102:63542..64163 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size410
Cds size222
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig102.259.1prot_F-serratus_M_contig102.259.1Fucus serratus malepolypeptideF-serratus_M_contig102 63584..64017 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928818.4417007-UTR-F-serratus_M_contig102:63541..635831622928818.4417007-UTR-F-serratus_M_contig102:63541..63583Fucus serratus maleUTRF-serratus_M_contig102 63542..63583 +
1690962586.3880606-UTR-F-serratus_M_contig102:63541..635831690962586.3880606-UTR-F-serratus_M_contig102:63541..63583Fucus serratus maleUTRF-serratus_M_contig102 63542..63583 +
1622928818.5528545-UTR-F-serratus_M_contig102:64017..641631622928818.5528545-UTR-F-serratus_M_contig102:64017..64163Fucus serratus maleUTRF-serratus_M_contig102 64018..64163 +
1690962586.4127448-UTR-F-serratus_M_contig102:64017..641631690962586.4127448-UTR-F-serratus_M_contig102:64017..64163Fucus serratus maleUTRF-serratus_M_contig102 64018..64163 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928818.523434-CDS-F-serratus_M_contig102:63583..637191622928818.523434-CDS-F-serratus_M_contig102:63583..63719Fucus serratus maleCDSF-serratus_M_contig102 63584..63719 +
1690962586.3963306-CDS-F-serratus_M_contig102:63583..637191690962586.3963306-CDS-F-serratus_M_contig102:63583..63719Fucus serratus maleCDSF-serratus_M_contig102 63584..63719 +
1622928818.5385695-CDS-F-serratus_M_contig102:63931..640171622928818.5385695-CDS-F-serratus_M_contig102:63931..64017Fucus serratus maleCDSF-serratus_M_contig102 63932..64017 +
1690962586.4045763-CDS-F-serratus_M_contig102:63931..640171690962586.4045763-CDS-F-serratus_M_contig102:63931..64017Fucus serratus maleCDSF-serratus_M_contig102 63932..64017 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig102.259.1

>prot_F-serratus_M_contig102.259.1 ID=prot_F-serratus_M_contig102.259.1|Name=mRNA_F-serratus_M_contig102.259.1|organism=Fucus serratus male|type=polypeptide|length=74bp
MTGDDPDEMGDDLVSVDLGTGGRGRGRDRARQGTHLRTAFVWGCQVLWVQ
RQRATINRSGRYRVSRGTTEPAG*
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mRNA from alignment at F-serratus_M_contig102:63542..64163+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig102.259.1 ID=mRNA_F-serratus_M_contig102.259.1|Name=mRNA_F-serratus_M_contig102.259.1|organism=Fucus serratus male|type=mRNA|length=622bp|location=Sequence derived from alignment at F-serratus_M_contig102:63542..64163+ (Fucus serratus male)
GGTAACAACGAACGGGGGCAGCTCGGGCGGGGTGACACGAACATGACGGG
GGACGACCCTGACGAGATGGGCGACGACCTCGTGTCGGTCGACCTCGGCA
CGGGAGGGCGAGGTCGCGGACGAGATCGCGCTCGGCAGGGAACACACCTG
CGTACTGCTTTCGTCTGGGGATGTCAAGGTTAGAGGAGCACGTCTGGGGA
CGGACGTGATTTTGCCCCGTACCTCTTACGTGTGTCGGGACTTGTTCGAC
AGTGATTGAACTCCACACGGTCAACTCCTGGCAGTGATATTATGGGATTA
CCTCAGTAGAGCTATGATACTCGCAAGTTGCTTACTTCCTGGGATTTTCT
TCGTTTCTCGCGGCTGTCGTTGCGATATTACTGTTAATAGTGCTTTGGGT
ACAACGACAAAGGGCAACTATTAATAGGTCAGGGCGATACCGTGTCTCGC
GGGGAACTACCGAACCAGCTGGGTGATGACCTGCCAGCCATCGATTTGGG
CACCGGCGCATCCGCGGTACAAGTGACTGTCGGCTGCGACCACACGTGCG
TGCTGCTAGACTGCTAGACGACGACTCGGTGAAGTGCTTCGGGTACAACA
ACTACGGCCAGTTGGGGCAGGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig102:63542..64163+

>mRNA_F-serratus_M_contig102.259.1 ID=mRNA_F-serratus_M_contig102.259.1|Name=mRNA_F-serratus_M_contig102.259.1|organism=Fucus serratus male|type=CDS|length=444bp|location=Sequence derived from alignment at F-serratus_M_contig102:63542..64163+ (Fucus serratus male)
ATGACGGGGGACGACCCTGACGAGATGGGCGACGACCTCGTGTCGGTCGA
CCTCGGCACGGGAGGGCGAGGTCGCGGACGAGATCGCGCTCGGCAGGGAA
CACACCTGCGTACTGCTTTCGTCTGGGGATGTCAAGATGACGGGGGACGA
CCCTGACGAGATGGGCGACGACCTCGTGTCGGTCGACCTCGGCACGGGAG
GGCGAGGTCGCGGACGAGATCGCGCTCGGCAGGGAACACACCTGCGTACT
GCTTTCGTCTGGGGATGTCAAGTGCTTTGGGTACAACGACAAAGGGCAAC
TATTAATAGGTCAGGGCGATACCGTGTCTCGCGGGGAACTACCGAACCAG
CTGGGTGATGCTTTGGGTACAACGACAAAGGGCAACTATTAATAGGTCAG
GGCGATACCGTGTCTCGCGGGGAACTACCGAACCAGCTGGGTGA
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