mRNA_F-serratus_M_contig102.259.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig102.259.1
Unique NamemRNA_F-serratus_M_contig102.259.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig102.259.1 vs. uniprot
Match: D7FS37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS37_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 9.860e-18
Identity = 45/81 (55.56%), Postives = 55/81 (67.90%), Query Frame = 2 
Query:  107 GEVADEIALGREHTCVLLSSGDVKCFGYNDKGQLLIGQGDTVSRGELPNQLGDDLPAIDLGTGASAVQVTVGCDHTCVLLD 349
            G    E+ALG +HTC+LL SG+V CFG ND GQL  G GDT +RG++   +G+   A DLG G SAV V +GC HTC LLD
Sbjct:   75 GGTVAEVALGEDHTCMLLDSGNVVCFGKNDSGQL--GLGDTSTRGQIAGDVGE---AADLGAGLSAVAVALGCRHTCGLLD 150
[Close]
BLAST of mRNA_F-serratus_M_contig102.259.1 vs. uniprot
Match: A0A520PN85_9PROT (Big_5 domain-containing protein (Fragment) n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A520PN85_9PROT)

HSP 1 Score: 88.2 bits (217), Expect = 1.090e-17
Identity = 43/81 (53.09%), Postives = 55/81 (67.90%), Query Frame = 2 
Query:  107 GEVADEIALGREHTCVLLSSGDVKCFGYNDKGQLLIGQGDTVSRGELPNQLGDDLPAIDLGTGASAVQVTVGCDHTCVLLD 349
            G  A  IA G  H+C +L +  VKC+G ND GQL  G GDT +RG+  +++GDDL A+DLGTG +AV +T G  HTC LLD
Sbjct:  363 GRTATAIAAGGAHSCAILDNSAVKCWGKNDAGQL--GLGDTNNRGDGADEMGDDLDAVDLGTGRTAVSITAGYAHTCALLD 441
[Close]
BLAST of mRNA_F-serratus_M_contig102.259.1 vs. uniprot
Match: A0A4V0NDF1_SORCE (Uncharacterized protein n=2 Tax=Sorangium cellulosum TaxID=56 RepID=A0A4V0NDF1_SORCE)

HSP 1 Score: 87.8 bits (216), Expect = 1.500e-17
Identity = 43/80 (53.75%), Postives = 52/80 (65.00%), Query Frame = 2 
Query:  107 GEVADEIALGREHTCVLLSSGDVKCFGYNDKGQLLIGQGDTVSRGELPNQLGDDLPAIDLGTGASAVQVTVGCDHTCVLL 346
            G    ++ALG  HTC LL+ G VKC+G ND GQL  G GD + RG  P +LGD LP +DLG GA+A  +T G  HTC LL
Sbjct:  529 GAPITQLALGEFHTCALLADGRVKCWGRNDLGQL--GLGDMLDRGGAPGELGDALPPVDLGEGATAQAITAGAQHTCALL 606
[Close]
BLAST of mRNA_F-serratus_M_contig102.259.1 vs. uniprot
Match: A0A2A5HTD2_9ALTE (Uncharacterized protein n=1 Tax=Alteromonadaceae bacterium TaxID=1916082 RepID=A0A2A5HTD2_9ALTE)

HSP 1 Score: 87.8 bits (216), Expect = 1.580e-17
Identity = 39/81 (48.15%), Postives = 55/81 (67.90%), Query Frame = 2 
Query:  107 GEVADEIALGREHTCVLLSSGDVKCFGYNDKGQLLIGQGDTVSRGELPNQLGDDLPAIDLGTGASAVQVTVGCDHTCVLLD 349
            G  A +I  G  H+C +L  GD+KC+GYN  GQL  G  D  +RG+ PN++G+ LP ++LGTG +A Q+ +G D+TC LLD
Sbjct:  816 GRTALQIETGGNHSCAILDDGDLKCWGYNSSGQL--GLSDQATRGDAPNEMGNRLPFVELGTGRTAKQIALGFDYTCALLD 894
[Close]
BLAST of mRNA_F-serratus_M_contig102.259.1 vs. uniprot
Match: A0A150U2Z6_SORCE (Uncharacterized protein n=1 Tax=Sorangium cellulosum TaxID=56 RepID=A0A150U2Z6_SORCE)

HSP 1 Score: 87.4 bits (215), Expect = 2.120e-17
Identity = 44/81 (54.32%), Postives = 52/81 (64.20%), Query Frame = 2 
Query:  107 GEVADEIALGREHTCVLLSSGDVKCFGYNDKGQLLIGQGDTVSRGELPNQLGDDLPAIDLGTGASAVQVTVGCDHTCVLLD 349
            G  A  IA G  HTC +L +  +KC+G+ND G+L  G GDT  RG  PNQ+GD LP +DLGTG SA  V  G  HTC LLD
Sbjct:   46 GRTAKAIAAGARHTCAILDNDQLKCWGFNDDGEL--GLGDTSHRGGGPNQMGDLLPTVDLGTGRSARAVAGGEHHTCALLD 124
[Close]
BLAST of mRNA_F-serratus_M_contig102.259.1 vs. uniprot
Match: A0A835W148_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835W148_9CHLO)

HSP 1 Score: 87.4 bits (215), Expect = 2.200e-17
Identity = 42/81 (51.85%), Postives = 55/81 (67.90%), Query Frame = 2 
Query:  107 GEVADEIALGREHTCVLLSSGDVKCFGYNDKGQLLIGQGDTVSRGELPNQLGDDLPAIDLGTGASAVQVTVGCDHTCVLLD 349
            G  A  I+ G  HTC LL +G VKC+G+ND GQL  G GDT  RG+ P ++G+ LPA++LGTG +A  ++ G  HTC LLD
Sbjct: 1304 GRTATAISAGGLHTCALLDNGSVKCWGWNDAGQL--GLGDTSHRGDGPGEMGNRLPAVELGTGRTATAISAGGLHTCALLD 1382
[Close]
BLAST of mRNA_F-serratus_M_contig102.259.1 vs. uniprot
Match: A0A2K9NW84_BACTC (Uncharacterized protein n=1 Tax=Bacteriovorax stolpii TaxID=960 RepID=A0A2K9NW84_BACTC)

HSP 1 Score: 84.7 bits (208), Expect = 2.980e-17
Identity = 41/81 (50.62%), Postives = 52/81 (64.20%), Query Frame = 2 
Query:  107 GEVADEIALGREHTCVLLSSGDVKCFGYNDKGQLLIGQGDTVSRGELPNQLGDDLPAIDLGTGASAVQVTVGCDHTCVLLD 349
            G  A  I+LG  H CV+L +  VKC+GYN  G L  G GDT +RG LPNQ+GD+LP +DLGTG +A  +       CV+LD
Sbjct:   18 GRTAKAISLGSSHACVILDNNKVKCWGYNASGAL--GLGDTTNRGALPNQMGDNLPYVDLGTGRTAKSIAATSLGACVVLD 96
[Close]
BLAST of mRNA_F-serratus_M_contig102.259.1 vs. uniprot
Match: A0A383F410_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A383F410_9ZZZZ)

HSP 1 Score: 83.6 bits (205), Expect = 4.680e-17
Identity = 40/81 (49.38%), Postives = 52/81 (64.20%), Query Frame = 2 
Query:  107 GEVADEIALGREHTCVLLSSGDVKCFGYNDKGQLLIGQGDTVSRGELPNQLGDDLPAIDLGTGASAVQVTVGCDHTCVLLD 349
            G  A  IA G +HTC +L +  VKC+G N  GQL  G GD  +RG+  N++GDDL A+DLG+G +A  +  G  HTC LLD
Sbjct:   36 GRTAKAIAAGNQHTCAILDNSSVKCWGANASGQL--GLGDDDNRGDGANEMGDDLDAVDLGSGRTAKAIATGDSHTCALLD 114
[Close]
BLAST of mRNA_F-serratus_M_contig102.259.1 vs. uniprot
Match: A0A7C1YL65_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7C1YL65_9ACTN)

HSP 1 Score: 85.5 bits (210), Expect = 9.500e-17
Identity = 41/81 (50.62%), Postives = 51/81 (62.96%), Query Frame = 2 
Query:  107 GEVADEIALGREHTCVLLSSGDVKCFGYNDKGQLLIGQGDTVSRGELPNQLGDDLPAIDLGTGASAVQVTVGCDHTCVLLD 349
            G  A  I  G  HTC LL +  VKC+GY   G L  G GD+V RG+ P ++GD+LPA+DLG G +A  +T G  HTC LLD
Sbjct:  283 GRTATAITAGSFHTCALLDNNTVKCWGYGSFGGL--GYGDSVKRGDDPGEMGDNLPAVDLGAGRTATAITAGSVHTCALLD 361
[Close]
BLAST of mRNA_F-serratus_M_contig102.259.1 vs. uniprot
Match: A0A7S0YYL7_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YYL7_9CRYP)

HSP 1 Score: 83.6 bits (205), Expect = 1.030e-16
Identity = 40/81 (49.38%), Postives = 56/81 (69.14%), Query Frame = 2 
Query:  107 GEVADEIALGREHTCVLLSSGDVKCFGYNDKGQLLIGQGDTVSRGELPNQLGDDLPAIDLGTGASAVQVTVGCDHTCVLLD 349
            G     I++G+ HTCV+L  G VKC+GYN +GQL  G GD ++RG+   Q+G  LP++ LG+G +AV V+VG  HTC +LD
Sbjct:   12 GGSVSSISVGQLHTCVVLVGGSVKCWGYNHRGQL--GVGDRMTRGDSNGQMGAALPSVYLGSGRTAVSVSVGNSHTCAMLD 90
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig102.259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS37_ECTSI9.860e-1855.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A520PN85_9PROT1.090e-1753.09Big_5 domain-containing protein (Fragment) n=1 Tax... [more]
A0A4V0NDF1_SORCE1.500e-1753.75Uncharacterized protein n=2 Tax=Sorangium cellulos... [more]
A0A2A5HTD2_9ALTE1.580e-1748.15Uncharacterized protein n=1 Tax=Alteromonadaceae b... [more]
A0A150U2Z6_SORCE2.120e-1754.32Uncharacterized protein n=1 Tax=Sorangium cellulos... [more]
A0A835W148_9CHLO2.200e-1751.85Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A2K9NW84_BACTC2.980e-1750.62Uncharacterized protein n=1 Tax=Bacteriovorax stol... [more]
A0A383F410_9ZZZZ4.680e-1749.38Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A7C1YL65_9ACTN9.500e-1750.62Uncharacterized protein (Fragment) n=1 Tax=Acidimi... [more]
A0A7S0YYL7_9CRYP1.030e-1649.38Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig102contigF-serratus_M_contig102:63542..64163 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size410
Cds size222
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig102.259.1prot_F-serratus_M_contig102.259.1Fucus serratus malepolypeptideF-serratus_M_contig102 63584..64017 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928818.4417007-UTR-F-serratus_M_contig102:63541..635831622928818.4417007-UTR-F-serratus_M_contig102:63541..63583Fucus serratus maleUTRF-serratus_M_contig102 63542..63583 +
1690962586.3880606-UTR-F-serratus_M_contig102:63541..635831690962586.3880606-UTR-F-serratus_M_contig102:63541..63583Fucus serratus maleUTRF-serratus_M_contig102 63542..63583 +
1622928818.5528545-UTR-F-serratus_M_contig102:64017..641631622928818.5528545-UTR-F-serratus_M_contig102:64017..64163Fucus serratus maleUTRF-serratus_M_contig102 64018..64163 +
1690962586.4127448-UTR-F-serratus_M_contig102:64017..641631690962586.4127448-UTR-F-serratus_M_contig102:64017..64163Fucus serratus maleUTRF-serratus_M_contig102 64018..64163 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928818.523434-CDS-F-serratus_M_contig102:63583..637191622928818.523434-CDS-F-serratus_M_contig102:63583..63719Fucus serratus maleCDSF-serratus_M_contig102 63584..63719 +
1690962586.3963306-CDS-F-serratus_M_contig102:63583..637191690962586.3963306-CDS-F-serratus_M_contig102:63583..63719Fucus serratus maleCDSF-serratus_M_contig102 63584..63719 +
1622928818.5385695-CDS-F-serratus_M_contig102:63931..640171622928818.5385695-CDS-F-serratus_M_contig102:63931..64017Fucus serratus maleCDSF-serratus_M_contig102 63932..64017 +
1690962586.4045763-CDS-F-serratus_M_contig102:63931..640171690962586.4045763-CDS-F-serratus_M_contig102:63931..64017Fucus serratus maleCDSF-serratus_M_contig102 63932..64017 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig102.259.1

>prot_F-serratus_M_contig102.259.1 ID=prot_F-serratus_M_contig102.259.1|Name=mRNA_F-serratus_M_contig102.259.1|organism=Fucus serratus male|type=polypeptide|length=74bp
MTGDDPDEMGDDLVSVDLGTGGRGRGRDRARQGTHLRTAFVWGCQVLWVQ
RQRATINRSGRYRVSRGTTEPAG*
back to top

mRNA from alignment at F-serratus_M_contig102:63542..64163+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig102.259.1 ID=mRNA_F-serratus_M_contig102.259.1|Name=mRNA_F-serratus_M_contig102.259.1|organism=Fucus serratus male|type=mRNA|length=622bp|location=Sequence derived from alignment at F-serratus_M_contig102:63542..64163+ (Fucus serratus male)
GGTAACAACGAACGGGGGCAGCTCGGGCGGGGTGACACGAACATGACGGG
GGACGACCCTGACGAGATGGGCGACGACCTCGTGTCGGTCGACCTCGGCA
CGGGAGGGCGAGGTCGCGGACGAGATCGCGCTCGGCAGGGAACACACCTG
CGTACTGCTTTCGTCTGGGGATGTCAAGGTTAGAGGAGCACGTCTGGGGA
CGGACGTGATTTTGCCCCGTACCTCTTACGTGTGTCGGGACTTGTTCGAC
AGTGATTGAACTCCACACGGTCAACTCCTGGCAGTGATATTATGGGATTA
CCTCAGTAGAGCTATGATACTCGCAAGTTGCTTACTTCCTGGGATTTTCT
TCGTTTCTCGCGGCTGTCGTTGCGATATTACTGTTAATAGTGCTTTGGGT
ACAACGACAAAGGGCAACTATTAATAGGTCAGGGCGATACCGTGTCTCGC
GGGGAACTACCGAACCAGCTGGGTGATGACCTGCCAGCCATCGATTTGGG
CACCGGCGCATCCGCGGTACAAGTGACTGTCGGCTGCGACCACACGTGCG
TGCTGCTAGACTGCTAGACGACGACTCGGTGAAGTGCTTCGGGTACAACA
ACTACGGCCAGTTGGGGCAGGC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig102:63542..64163+

>mRNA_F-serratus_M_contig102.259.1 ID=mRNA_F-serratus_M_contig102.259.1|Name=mRNA_F-serratus_M_contig102.259.1|organism=Fucus serratus male|type=CDS|length=444bp|location=Sequence derived from alignment at F-serratus_M_contig102:63542..64163+ (Fucus serratus male)
ATGACGGGGGACGACCCTGACGAGATGGGCGACGACCTCGTGTCGGTCGA
CCTCGGCACGGGAGGGCGAGGTCGCGGACGAGATCGCGCTCGGCAGGGAA
CACACCTGCGTACTGCTTTCGTCTGGGGATGTCAAGATGACGGGGGACGA
CCCTGACGAGATGGGCGACGACCTCGTGTCGGTCGACCTCGGCACGGGAG
GGCGAGGTCGCGGACGAGATCGCGCTCGGCAGGGAACACACCTGCGTACT
GCTTTCGTCTGGGGATGTCAAGTGCTTTGGGTACAACGACAAAGGGCAAC
TATTAATAGGTCAGGGCGATACCGTGTCTCGCGGGGAACTACCGAACCAG
CTGGGTGATGCTTTGGGTACAACGACAAAGGGCAACTATTAATAGGTCAG
GGCGATACCGTGTCTCGCGGGGAACTACCGAACCAGCTGGGTGA
back to top