mRNA_F-serratus_M_contig102.259.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig102.259.1
Unique NamemRNA_F-serratus_M_contig102.259.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig102.259.1 vs. uniprot
Match: A0A6H5L2S4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2S4_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 2.760e-19
Identity = 46/81 (56.79%), Postives = 54/81 (66.67%), Query Frame = 2
Query:  107 GEVADEIALGREHTCVLLSSGDVKCFGYNDKGQLLIGQGDTVSRGELPNQLGDDLPAIDLGTGASAVQVTVGCDHTCVLLD 349
            G    E+ALG +HTC+LL SGDV CFG ND GQL  G GDT +RG++   +G+   A DLG G SAV V  GC HTC LLD
Sbjct:   19 GGTVAEMALGEDHTCMLLDSGDVVCFGKNDSGQL--GLGDTSTRGQIAGDVGE---AADLGAGLSAVAVAAGCRHTCGLLD 94          
BLAST of mRNA_F-serratus_M_contig102.259.1 vs. uniprot
Match: A0A835T669_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835T669_9CHLO)

HSP 1 Score: 92.0 bits (227), Expect = 3.990e-19
Identity = 45/81 (55.56%), Postives = 56/81 (69.14%), Query Frame = 2
Query:  107 GEVADEIALGREHTCVLLSSGDVKCFGYNDKGQLLIGQGDTVSRGELPNQLGDDLPAIDLGTGASAVQVTVGCDHTCVLLD 349
            G  A  I+ G  HTC LL +G +KC+GYN+ GQL  G GDT SRG+ P ++GD LPAI LGTG +A  ++VG  HTC LLD
Sbjct:  101 GRTATAISAGFLHTCALLDNGSIKCWGYNNAGQL--GLGDTSSRGDGPGEMGDTLPAITLGTGRTATAISVGGIHTCALLD 179          
BLAST of mRNA_F-serratus_M_contig102.259.1 vs. uniprot
Match: A0A831ZGI9_9GAMM (Uncharacterized protein n=1 Tax=Crenotrichaceae bacterium TaxID=2268193 RepID=A0A831ZGI9_9GAMM)

HSP 1 Score: 92.0 bits (227), Expect = 5.180e-19
Identity = 45/89 (50.56%), Postives = 60/89 (67.42%), Query Frame = 2
Query:  104 EGEVADEIALG-------REHTCVLLSSGDVKCFGYNDKGQLLIGQGDTVSRGELPNQLGDDLPAIDLGTGASAVQVTVGCDHTCVLLD 349
            +G  A +IA+G       R H C LL +G VKC+G N  GQL  GQGDT  RG+ PN++GD+LPA+DLG G +A+++T G  HTC +LD
Sbjct:  804 QGRSAVQIAIGSYYGDDIRAHVCALLDNGSVKCWGDNTWGQL--GQGDTEDRGDEPNEMGDNLPAVDLGRGRTALKITAGASHTCAILD 890          
BLAST of mRNA_F-serratus_M_contig102.259.1 vs. uniprot
Match: A0A0K1E936_CHOCO (Uncharacterized protein n=1 Tax=Chondromyces crocatus TaxID=52 RepID=A0A0K1E936_CHOCO)

HSP 1 Score: 91.3 bits (225), Expect = 8.990e-19
Identity = 44/81 (54.32%), Postives = 55/81 (67.90%), Query Frame = 2
Query:  107 GEVADEIALGREHTCVLLSSGDVKCFGYNDKGQLLIGQGDTVSRGELPNQLGDDLPAIDLGTGASAVQVTVGCDHTCVLLD 349
            GE+A  IA G  HTC LL+ G +KC+G N  G+L  G GDT  RG+ P ++GD LPA+DLGTG +A  +TVG  H C LLD
Sbjct:  229 GELAVAIAAGGSHTCALLAGGSIKCWGSNSFGEL--GLGDTAHRGDEPGEMGDALPAVDLGTGRTATALTVGYRHACALLD 307          
BLAST of mRNA_F-serratus_M_contig102.259.1 vs. uniprot
Match: A0A848LYD2_9DELT (Uncharacterized protein n=1 Tax=Pyxidicoccus fallax TaxID=394095 RepID=A0A848LYD2_9DELT)

HSP 1 Score: 90.5 bits (223), Expect = 1.440e-18
Identity = 43/82 (52.44%), Postives = 54/82 (65.85%), Query Frame = 2
Query:  104 EGEVADEIALGREHTCVLLSSGDVKCFGYNDKGQLLIGQGDTVSRGELPNQLGDDLPAIDLGTGASAVQVTVGCDHTCVLLD 349
            +G  A  +A G  HTC LL  G VKC+G N  GQL  G GDT +RG+ P +LGD LPA+DLG G +A+ +  G +HTC LLD
Sbjct:  336 KGRTAVAVAAGEAHTCALLDRGTVKCWGRNAHGQL--GLGDTDTRGDTPGELGDALPAVDLGKGRTAIALAAGAEHTCALLD 415          
BLAST of mRNA_F-serratus_M_contig102.259.1 vs. uniprot
Match: A0A4U1HUB6_9DELT (DUF4215 domain-containing protein n=1 Tax=Polyangium aurulentum TaxID=2567896 RepID=A0A4U1HUB6_9DELT)

HSP 1 Score: 90.5 bits (223), Expect = 1.760e-18
Identity = 44/81 (54.32%), Postives = 55/81 (67.90%), Query Frame = 2
Query:  107 GEVADEIALGREHTCVLLSSGDVKCFGYNDKGQLLIGQGDTVSRGELPNQLGDDLPAIDLGTGASAVQVTVGCDHTCVLLD 349
            G  A  IA G  HTC LL+ G VKC+G N  GQL  G GDT +RG+ P ++G+ LPA+ LGTG +AV +  G +HTCVLLD
Sbjct:  479 GGQAKAIAAGGAHTCALLTDGSVKCWGANASGQL--GLGDTAARGDEPGEMGELLPAVQLGTGKTAVAIAAGAEHTCVLLD 557          
BLAST of mRNA_F-serratus_M_contig102.259.1 vs. uniprot
Match: A0A7C1YRK2_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7C1YRK2_9ACTN)

HSP 1 Score: 90.1 bits (222), Expect = 2.360e-18
Identity = 42/81 (51.85%), Postives = 55/81 (67.90%), Query Frame = 2
Query:  107 GEVADEIALGREHTCVLLSSGDVKCFGYNDKGQLLIGQGDTVSRGELPNQLGDDLPAIDLGTGASAVQVTVGCDHTCVLLD 349
            G  A  IA G+++TC LL  G VKC+G N  GQL  GQG+T   G+ P ++GD+LPA+DLGTG +A  ++ G  HTC LLD
Sbjct:  168 GRTATAIAAGQQYTCALLDDGTVKCWGNNSSGQL--GQGNTDDIGDNPGEMGDNLPAVDLGTGRTATAISAGSSHTCALLD 246          
BLAST of mRNA_F-serratus_M_contig102.259.1 vs. uniprot
Match: A0A4Q5ZUK8_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Myxococcaceae bacterium TaxID=2484252 RepID=A0A4Q5ZUK8_9DELT)

HSP 1 Score: 89.7 bits (221), Expect = 2.550e-18
Identity = 44/79 (55.70%), Postives = 54/79 (68.35%), Query Frame = 2
Query:  113 VADEIALGREHTCVLLSSGDVKCFGYNDKGQLLIGQGDTVSRGELPNQLGDDLPAIDLGTGASAVQVTVGCDHTCVLLD 349
            + D I  G  H+CV+LSSG VKC+G ND+GQL  G GDT+SRG+   Q+GD LPA+DLG G  A  V  G  HTC LL+
Sbjct:   39 LVDAITAGFGHSCVVLSSGAVKCWGQNDRGQL--GLGDTISRGDKTGQMGDALPAVDLGAGIEATAVAAGFWHTCALLE 115          
BLAST of mRNA_F-serratus_M_contig102.259.1 vs. uniprot
Match: A0A835T094_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835T094_9CHLO)

HSP 1 Score: 89.0 bits (219), Expect = 6.470e-18
Identity = 42/81 (51.85%), Postives = 55/81 (67.90%), Query Frame = 2
Query:  107 GEVADEIALGREHTCVLLSSGDVKCFGYNDKGQLLIGQGDTVSRGELPNQLGDDLPAIDLGTGASAVQVTVGCDHTCVLLD 349
            G  A  I+ G  +TC LL +G VKC+G+ND GQL  G GDT  RG+ P ++GD LPA++LGTG +A  ++ G  HTC LLD
Sbjct: 1806 GRTATAISAGSRYTCALLDNGSVKCWGWNDDGQL--GLGDTSRRGDGPGEMGDTLPAVELGTGRTATAISAGGWHTCALLD 1884          
BLAST of mRNA_F-serratus_M_contig102.259.1 vs. uniprot
Match: A0A150PNJ9_SORCE (Uncharacterized protein n=2 Tax=Sorangium cellulosum TaxID=56 RepID=A0A150PNJ9_SORCE)

HSP 1 Score: 88.6 bits (218), Expect = 8.580e-18
Identity = 43/81 (53.09%), Postives = 54/81 (66.67%), Query Frame = 2
Query:  107 GEVADEIALGREHTCVLLSSGDVKCFGYNDKGQLLIGQGDTVSRGELPNQLGDDLPAIDLGTGASAVQVTVGCDHTCVLLD 349
            G  A  IA G  HTC +L +  VKC+G N +GQL  G GD   RG+ PN++GDDLP +DLGTG +A  + VG  HTCV+LD
Sbjct:  217 GRTAKAIAAGVSHTCAILDNDQVKCWGDNIEGQL--GLGDMDPRGDGPNEMGDDLPEVDLGTGRTAKAIAVGSGHTCVILD 295          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig102.259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2S4_9PHAE2.760e-1956.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835T669_9CHLO3.990e-1955.56Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A831ZGI9_9GAMM5.180e-1950.56Uncharacterized protein n=1 Tax=Crenotrichaceae ba... [more]
A0A0K1E936_CHOCO8.990e-1954.32Uncharacterized protein n=1 Tax=Chondromyces croca... [more]
A0A848LYD2_9DELT1.440e-1852.44Uncharacterized protein n=1 Tax=Pyxidicoccus falla... [more]
A0A4U1HUB6_9DELT1.760e-1854.32DUF4215 domain-containing protein n=1 Tax=Polyangi... [more]
A0A7C1YRK2_9ACTN2.360e-1851.85Uncharacterized protein n=1 Tax=Acidimicrobiales b... [more]
A0A4Q5ZUK8_9DELT2.550e-1855.70Uncharacterized protein (Fragment) n=1 Tax=Myxococ... [more]
A0A835T094_9CHLO6.470e-1851.85Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A150PNJ9_SORCE8.580e-1853.09Uncharacterized protein n=2 Tax=Sorangium cellulos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig102contigF-serratus_M_contig102:63542..64163 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size410
Cds size222
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig102.259.1prot_F-serratus_M_contig102.259.1Fucus serratus malepolypeptideF-serratus_M_contig102 63584..64017 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928818.4417007-UTR-F-serratus_M_contig102:63541..635831622928818.4417007-UTR-F-serratus_M_contig102:63541..63583Fucus serratus maleUTRF-serratus_M_contig102 63542..63583 +
1690962586.3880606-UTR-F-serratus_M_contig102:63541..635831690962586.3880606-UTR-F-serratus_M_contig102:63541..63583Fucus serratus maleUTRF-serratus_M_contig102 63542..63583 +
1622928818.5528545-UTR-F-serratus_M_contig102:64017..641631622928818.5528545-UTR-F-serratus_M_contig102:64017..64163Fucus serratus maleUTRF-serratus_M_contig102 64018..64163 +
1690962586.4127448-UTR-F-serratus_M_contig102:64017..641631690962586.4127448-UTR-F-serratus_M_contig102:64017..64163Fucus serratus maleUTRF-serratus_M_contig102 64018..64163 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928818.523434-CDS-F-serratus_M_contig102:63583..637191622928818.523434-CDS-F-serratus_M_contig102:63583..63719Fucus serratus maleCDSF-serratus_M_contig102 63584..63719 +
1690962586.3963306-CDS-F-serratus_M_contig102:63583..637191690962586.3963306-CDS-F-serratus_M_contig102:63583..63719Fucus serratus maleCDSF-serratus_M_contig102 63584..63719 +
1622928818.5385695-CDS-F-serratus_M_contig102:63931..640171622928818.5385695-CDS-F-serratus_M_contig102:63931..64017Fucus serratus maleCDSF-serratus_M_contig102 63932..64017 +
1690962586.4045763-CDS-F-serratus_M_contig102:63931..640171690962586.4045763-CDS-F-serratus_M_contig102:63931..64017Fucus serratus maleCDSF-serratus_M_contig102 63932..64017 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig102.259.1

>prot_F-serratus_M_contig102.259.1 ID=prot_F-serratus_M_contig102.259.1|Name=mRNA_F-serratus_M_contig102.259.1|organism=Fucus serratus male|type=polypeptide|length=74bp
MTGDDPDEMGDDLVSVDLGTGGRGRGRDRARQGTHLRTAFVWGCQVLWVQ
RQRATINRSGRYRVSRGTTEPAG*
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mRNA from alignment at F-serratus_M_contig102:63542..64163+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig102.259.1 ID=mRNA_F-serratus_M_contig102.259.1|Name=mRNA_F-serratus_M_contig102.259.1|organism=Fucus serratus male|type=mRNA|length=622bp|location=Sequence derived from alignment at F-serratus_M_contig102:63542..64163+ (Fucus serratus male)
GGTAACAACGAACGGGGGCAGCTCGGGCGGGGTGACACGAACATGACGGG GGACGACCCTGACGAGATGGGCGACGACCTCGTGTCGGTCGACCTCGGCA CGGGAGGGCGAGGTCGCGGACGAGATCGCGCTCGGCAGGGAACACACCTG CGTACTGCTTTCGTCTGGGGATGTCAAGGTTAGAGGAGCACGTCTGGGGA CGGACGTGATTTTGCCCCGTACCTCTTACGTGTGTCGGGACTTGTTCGAC AGTGATTGAACTCCACACGGTCAACTCCTGGCAGTGATATTATGGGATTA CCTCAGTAGAGCTATGATACTCGCAAGTTGCTTACTTCCTGGGATTTTCT TCGTTTCTCGCGGCTGTCGTTGCGATATTACTGTTAATAGTGCTTTGGGT ACAACGACAAAGGGCAACTATTAATAGGTCAGGGCGATACCGTGTCTCGC GGGGAACTACCGAACCAGCTGGGTGATGACCTGCCAGCCATCGATTTGGG CACCGGCGCATCCGCGGTACAAGTGACTGTCGGCTGCGACCACACGTGCG TGCTGCTAGACTGCTAGACGACGACTCGGTGAAGTGCTTCGGGTACAACA ACTACGGCCAGTTGGGGCAGGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig102:63542..64163+

>mRNA_F-serratus_M_contig102.259.1 ID=mRNA_F-serratus_M_contig102.259.1|Name=mRNA_F-serratus_M_contig102.259.1|organism=Fucus serratus male|type=CDS|length=444bp|location=Sequence derived from alignment at F-serratus_M_contig102:63542..64163+ (Fucus serratus male)
ATGACGGGGGACGACCCTGACGAGATGGGCGACGACCTCGTGTCGGTCGA
CCTCGGCACGGGAGGGCGAGGTCGCGGACGAGATCGCGCTCGGCAGGGAA
CACACCTGCGTACTGCTTTCGTCTGGGGATGTCAAGATGACGGGGGACGA
CCCTGACGAGATGGGCGACGACCTCGTGTCGGTCGACCTCGGCACGGGAG
GGCGAGGTCGCGGACGAGATCGCGCTCGGCAGGGAACACACCTGCGTACT
GCTTTCGTCTGGGGATGTCAAGTGCTTTGGGTACAACGACAAAGGGCAAC
TATTAATAGGTCAGGGCGATACCGTGTCTCGCGGGGAACTACCGAACCAG
CTGGGTGATGCTTTGGGTACAACGACAAAGGGCAACTATTAATAGGTCAG
GGCGATACCGTGTCTCGCGGGGAACTACCGAACCAGCTGGGTGA
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