|
Homology
BLAST of mRNA_F-serratus_M_contig102.258.1 vs. uniprot
Match: UPI001C50233F (heterogeneous nuclear ribonucleoprotein 1-like n=1 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C50233F) HSP 1 Score: 187 bits (474), Expect = 1.340e-48 Identity = 95/192 (49.48%), Postives = 126/192 (65.62%), Query Frame = 1
Query: 607 EGKIFLGGLTWQTTDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKEEHVIDGRTIDVKRAVPRDRAPQPRATTDRQF------SSRGGS-------QIFVGGLDQEVNDSDFRAYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMSGGMHELKGKAVEVKTAAPRDG 1143
+ K+F+GG++W+T+DE LK HFGK+G + + ++MR+K TG RGFGFV F S AD AL+++HVI GRT++VK+AVPR Q +Q SS GGS +IFVGGL + + +F++YF KFG+V D VVMYD T R RGFGFIT+D+ + V VM HEL K VEVK A P+DG
Sbjct: 5 QAKLFVGGISWETSDETLKDHFGKYGDVVESVIMRDKNTGSARGFGFVLFSDPSVADKALQDKHVILGRTVEVKKAVPRGDQHQHXXXXQQQNKGSIKNSSNGGSDNQFRTKKIFVGGLSSSLTEEEFKSYFEKFGRVTDVVVMYDSVTHRPRGFGFITFDSEEAVESVMQKNFHELNDKFVEVKRAVPKDG 196
BLAST of mRNA_F-serratus_M_contig102.258.1 vs. uniprot
Match: A0A1Y1IND2_KLENI (RNA-binding protein Musashi n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IND2_KLENI) HSP 1 Score: 189 bits (479), Expect = 1.500e-48 Identity = 95/193 (49.22%), Postives = 127/193 (65.80%), Query Frame = 1
Query: 610 GKIFLGGLTWQTTDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKEEHVIDGRTIDVKRAVPRDRAP-QPRAT-TDRQFSSRGGSQIFVGGLDQEVNDSDFRAYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMSGGMHELKGKAVEVKTAAPRD--GPRPFSGGGYSG 1176
GK+F+GG++W+TT+E LK HF +G + + I+M+++ TG RGFGFV F S AD ++E+H IDGR ++ K+AVPRD P PR + +QF ++ +IFVGGL V + DFR+YF FG + D VVMYD +T R RGFGFI++D V VM HEL GK VEVK A P++ GP P GG Y G
Sbjct: 17 GKLFVGGISWETTEERLKQHFEAYGEVVETIIMKDRATGRARGFGFVVFADPSIADQVVQEKHTIDGRQVEAKKAVPRDEQPGHPRTSGVGQQFRTK---KIFVGGLASTVTEEDFRSYFENFGTITDVVVMYDHQTQRPRGFGFISFDQESSVDTVMEKSFHELNGKTVEVKRAIPKELSGPSPSRGGAYGG 206
BLAST of mRNA_F-serratus_M_contig102.258.1 vs. uniprot
Match: A0A4D9D827_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D827_9STRA) HSP 1 Score: 187 bits (476), Expect = 2.530e-48 Identity = 92/183 (50.27%), Postives = 129/183 (70.49%), Query Frame = 1
Query: 613 KIFLGGLTWQTTDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKEEHVIDGRTIDVKRAVPRDRAPQP--------RATTDRQFSSRGGSQIFVGGLDQEVNDSDFRAYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMSGGMHELKGKAVEVKTAAPR 1137
KIF+GG+ W TT+E L ++FGK+G L+DV+LMR+K TG PRGFGFV F ++ +AA+ E H++DGR +DVK+AVPR++AP P A RQF ++FVGGL +V + FRAYF KFG++ DAVVM D+ TGRSRGFGF+TY ++KV+S H+++G+ ++VK A P+
Sbjct: 46 KIFVGGVAWHTTEEGLSSYFGKYGELTDVVLMRDKNTGGPRGFGFVSFATPAAMEAAVSEAHMLDGRNLDVKKAVPREQAPAPVRAIWGGTGAGPQRQFQDI--KKVFVGGLSPDVTEEAFRAYFDKFGEITDAVVMMDRTTGRSRGFGFVTYAEEAAMKKVLSQ-QHDMEGRPMDVKRAEPK 225
BLAST of mRNA_F-serratus_M_contig102.258.1 vs. uniprot
Match: A0A0P1AWA8_PLAHL (Heterogeneous nuclear ribonucleoprotein 1-like isoform x1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AWA8_PLAHL) HSP 1 Score: 185 bits (469), Expect = 5.090e-48 Identity = 95/199 (47.74%), Postives = 137/199 (68.84%), Query Frame = 1
Query: 610 GKIFLGGLTWQTTDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKEEHVIDGRTIDVKRAVPRDRAPQPRATTDRQ----FSSRG---------GSQIFVGGLDQEVNDSDFRAYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMSGGMHELKGKAVEVKTAAPRDGPRPFSGGG 1167
GK+F+GG++W+TT++ L+ HFGK+G+L+D LM++K TG+PRGFGFV F AS+ D L+E H +DGR+++VKRA+PR+R P ++ R +SS G +IFVGGL + + DFR YF +FG++ DAVVM D+ T RSRGFGFIT+++ V +V+S HE+ GK+VE+K A P++ SGGG
Sbjct: 127 GKLFIGGVSWETTEDTLRQHFGKYGALTDAALMKDKYTGQPRGFGFVTFADASAIDRVLEETHTLDGRSVEVKRAIPRERTA-PGSSEFRGARSGYSSNGXXXXGIFTESKKIFVGGLAPTIAEQDFRHYFEEFGRITDAVVMIDRDTQRSRGFGFITFEDESSVAEVISKN-HEIHGKSVEIKRAEPKEA---RSGGG 320
BLAST of mRNA_F-serratus_M_contig102.258.1 vs. uniprot
Match: A0A5A7PXB6_STRAF (RNA-binding (RRM/RBD/RNP motifs) family protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7PXB6_STRAF) HSP 1 Score: 185 bits (470), Expect = 7.870e-48 Identity = 93/206 (45.15%), Postives = 132/206 (64.08%), Query Frame = 1
Query: 607 EGKIFLGGLTWQTTDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKEEHVIDGRTIDVKRAVPRDRAPQPRATTDRQFSSRGGSQ------------------IFVGGLDQEVNDSDFRAYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMSGGMHELKGKAVEVKTAAPRDGPRPFSGGGY 1170
+ K+F+GG++W+TT+++L HF K+G +S ++ +++++G+PRGF FV F +S+ D AL+E H I GRT++VKRA+PR + +Q +SRG S+ IFVGGL + + +FR+YFAKFG++ D VVM+D T R RGFGFITYD+ D V +VM HEL GK VEVK A P+DG SG GY
Sbjct: 6 QNKLFVGGISWETTEDILNEHFNKYGVVSGSVIAKDRVSGQPRGFAFVTFSESSAVDRALQESHQILGRTVEVKRAIPRS-----EQQSQQQHNSRGLSRNFSGTNKGRNTDEFRTKKIFVGGLSTNLTEQEFRSYFAKFGRITDVVVMHDNMTHRPRGFGFITYDSEDSVEEVMQKNFHELAGKLVEVKRAVPKDGSN-SSGNGY 205
BLAST of mRNA_F-serratus_M_contig102.258.1 vs. uniprot
Match: A0A836CCM9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCM9_9STRA) HSP 1 Score: 186 bits (471), Expect = 1.150e-47 Identity = 93/194 (47.94%), Postives = 129/194 (66.49%), Query Frame = 1
Query: 601 DVEGKIFLGGLTWQTTDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKEEHVIDGRTIDVKRAVPR---DRAPQPRATTDRQFSSRGGSQIFVGGLDQEVNDSDFRAYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMSGGMHELKGKAVEVKTAAPRDGPRPFSGGGYS 1173
D EGK+F+GG+ W TTD +LK +F K+G + ++ LM++K+TG PRGF F++F+ + + + ++H+IDGR +DVK+AVPR +R P+A T + IFVGGLDQ VND DFR +F K+GKV D V+MYDK T RSRGFGF+T++ ++ + H LK KAVEVK AAPR+ GYS
Sbjct: 123 DSEGKVFVGGIGWSTTDAVLKVYFEKFGVVEEIALMKDKLTGHPRGFAFIKFKDPAVTETVVTQQHIIDGRNVDVKKAVPRSQKERRDAPKAPTSLK--------IFVGGLDQAVNDEDFRKHFEKYGKVSDCVIMYDKITKRSRGFGFVTFEAEADIKACLKDS-HVLKDKAVEVKEAAPREQREQQQRSGYS 307
BLAST of mRNA_F-serratus_M_contig102.258.1 vs. uniprot
Match: A0A225W0H2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W0H2_9STRA) HSP 1 Score: 187 bits (474), Expect = 1.650e-47 Identity = 93/187 (49.73%), Postives = 130/187 (69.52%), Query Frame = 1
Query: 610 GKIFLGGLTWQTTDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKEEHVIDGRTIDVKRAVPRDRAPQPRATTDRQ------FSSRGG----SQIFVGGLDQEVNDSDFRAYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMSGGMHELKGKAVEVKTAAPRD 1140
GK+F+GG++W+TT++ L+ HFGK+GSL+D LM++K TG+PRGFGFV F AS+ D L E H +DGR+++VKRA+PR+R P ++ R F GG +IFVGGL V + DFR YF +FGK+ DAVVM D+ T RSRGFGFIT++ V +V+S H++ GK+VE+K A P++
Sbjct: 104 GKLFIGGVSWETTEDTLRQHFGKYGSLTDAALMKDKYTGQPRGFGFVTFADASAIDRVLDEAHTLDGRSVEVKRAIPRERTA-PGSSDFRSGRSGFGFGGGGGFTEQKKIFVGGLAPTVTEQDFRHYFEEFGKITDAVVMIDRDTQRSRGFGFITFEEESSVAEVISKN-HDIHGKSVEIKRAEPKE 288
BLAST of mRNA_F-serratus_M_contig102.258.1 vs. uniprot
Match: I1I4K8_BRADI (Uncharacterized protein n=18 Tax=Pooideae TaxID=147368 RepID=I1I4K8_BRADI) HSP 1 Score: 186 bits (473), Expect = 1.680e-47 Identity = 94/199 (47.24%), Postives = 125/199 (62.81%), Query Frame = 1
Query: 607 EGKIFLGGLTWQTTDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKEEHVIDGRTIDVKRAVPRDRAPQPRATTDRQFSSRGG------------SQIFVGGLDQEVNDSDFRAYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMSGGMHELKGKAVEVKTAAPRDGPRPFSGGG 1167
+GK+F+GG++W+TT+E L HF +G +S +MR+K+TG PRGFGFV + ++ DAAL E H +DGRT+DVKRA+ R+ +A + GG +IFVGGL + D +FR YF FG V D VVMYD+ T R RGFGFIT+D+ D V +V+ H+L GK VEVK A PR+ P SGGG
Sbjct: 5 QGKLFIGGISWETTEEKLHEHFSTFGEVSQAAVMRDKLTGRPRGFGFVVYADPAAVDAALLEPHTLDGRTVDVKRALSREEQQASKAVNPSTGRNTGGXXXXNDASGTRTKKIFVGGLPSSLTDDEFRQYFQTFGAVTDVVVMYDQTTQRPRGFGFITFDSEDAVDRVLHKTFHDLGGKMVEVKRALPREA-NPGSGGG 202
BLAST of mRNA_F-serratus_M_contig102.258.1 vs. uniprot
Match: A0A1V9ZI01_9STRA (DAZ-associated protein 1-like n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZI01_9STRA) HSP 1 Score: 186 bits (471), Expect = 1.720e-47 Identity = 96/201 (47.76%), Postives = 135/201 (67.16%), Query Frame = 1
Query: 607 EGKIFLGGLTWQTTDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKEEHVIDGRTIDVKRAVPRD-RAPQPRATTDRQFSSR-GGS------QIFVGGLDQEVNDSDFRAYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMSGGMHELKGKAVEVKTAAPRDGPRPFSGG---GYSG 1176
+GKIF+GG++W+TT++ L++HFGK+G+L+D LM++K +G+PRGFGFV F+ S D L + H++DGR ++VKRAVPRD + +P+ +S R GS +IFVGGL V + DFR YF +GK+ DA+VM D+ T RSRGFGF+T++ V +V+S HEL GK VE+K A P+ R GG GY G
Sbjct: 75 QGKIFVGGVSWETTEDNLRSHFGKYGNLTDAALMKDKYSGQPRGFGFVTFEDPSVIDRVLGDTHMLDGRNVEVKRAVPRDSQGARPQGGASSGYSDRFAGSGRTESKKIFVGGLPPSVTNDDFRTYFEDYGKITDAIVMMDRDTQRSRGFGFVTFEEEGAVAEVISKS-HELHGKVVEIKRAEPKGEMRGGRGGYDSGYGG 274
BLAST of mRNA_F-serratus_M_contig102.258.1 vs. uniprot
Match: W9QSX8_9ROSA (DAZ-associated protein 1 n=1 Tax=Morus notabilis TaxID=981085 RepID=W9QSX8_9ROSA) HSP 1 Score: 186 bits (471), Expect = 1.970e-47 Identity = 96/205 (46.83%), Postives = 128/205 (62.44%), Query Frame = 1
Query: 607 EGKIFLGGLTWQTTDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKEEHVIDGRTIDVKRAVPRDRAPQPRATTDRQFSSRGGS--------QIFVGGLDQEVNDSDFRAYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMSGGMHELKGKAVEVKTAAPRDGPRPFSGG------GYSGS 1179
EGK+F+GG+ W TT+E L+ +FG++G ++ ++MR+K TG PRGFGFV F S D L ++H IDGRT++ KRA+ R+ Q + T SSRG +IFVGGL + + FR +F FG V D V+MYD+ T R RGFGFIT+D+ D V +V+ HEL GKAVEVK A P+D P GG GYSG+
Sbjct: 5 EGKLFIGGIAWDTTEENLRDYFGQYGEVTQTVIMRDKTTGRPRGFGFVVFSDPSVLDTVLNDKHTIDGRTVEAKRALSREEQ-QTSSKTGNFSSSRGSGGGGNFKTKKIFVGGLPSSLTEDGFRQFFESFGNVTDVVIMYDQSTQRPRGFGFITFDSEDAVDRVLYKNFHELNGKAVEVKRALPKDA-NPGGGGRGGGYQGYSGA 207
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 364.8 |
Seed ortholog evalue | 5.9e-98 |
Seed eggNOG ortholog | 2880.D7FQT7 |
Preferred name | HNRNPA1 |
KEGG rclass | RC00302 |
KEGG ko | ko:K12235,ko:K12741,ko:K14411 |
KEGG Reaction | R00589 |
KEGG Pathway | ko00260,ko01100,ko03015,ko03040,map00260,map01100,map03015,map03040 |
Hectar predicted targeting category | other localisation |
GOs | GO:0000003,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0003730,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005844,GO:0005849,GO:0006139,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0009791,GO:0009987,GO:0010228,GO:0010467,GO:0016070,GO:0016071,GO:0022414,GO:0030154,GO:0031123,GO:0031124,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034046,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0047484,GO:0048468,GO:0048583,GO:0048608,GO:0048731,GO:0048856,GO:0048863,GO:0048864,GO:0048869,GO:0050789,GO:0061458,GO:0065007,GO:0070013,GO:0070717,GO:0071704,GO:0080134,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:1901000,GO:1901360,GO:1901363,GO:1990904,GO:2000070 |
EggNOG free text desc. | poly(U) RNA binding |
EggNOG OGs | KOG4205@1,KOG4205@2759 |
EC | 5.1.1.18 |
COG Functional cat. | S |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
BRITE | ko00000,ko00001,ko01000,ko03019,ko03041 |
Exons | 11 |
Model size | 3016 |
Cds size | 1344 |
Stop | 1 |
Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928818.9495244-UTR-F-serratus_M_contig102:37111..37684 | 1622928818.9495244-UTR-F-serratus_M_contig102:37111..37684 | Fucus serratus male | UTR | F-serratus_M_contig102 37112..37684 + |
1690962586.6244707-UTR-F-serratus_M_contig102:37111..37684 | 1690962586.6244707-UTR-F-serratus_M_contig102:37111..37684 | Fucus serratus male | UTR | F-serratus_M_contig102 37112..37684 + |
1622928819.1624835-UTR-F-serratus_M_contig102:42660..43759 | 1622928819.1624835-UTR-F-serratus_M_contig102:42660..43759 | Fucus serratus male | UTR | F-serratus_M_contig102 42661..43759 + |
1690962586.7272284-UTR-F-serratus_M_contig102:42660..43759 | 1690962586.7272284-UTR-F-serratus_M_contig102:42660..43759 | Fucus serratus male | UTR | F-serratus_M_contig102 42661..43759 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928818.9667487-CDS-F-serratus_M_contig102:37684..37706 | 1622928818.9667487-CDS-F-serratus_M_contig102:37684..37706 | Fucus serratus male | CDS | F-serratus_M_contig102 37685..37706 + |
1690962586.6348295-CDS-F-serratus_M_contig102:37684..37706 | 1690962586.6348295-CDS-F-serratus_M_contig102:37684..37706 | Fucus serratus male | CDS | F-serratus_M_contig102 37685..37706 + |
1622928819.00461-CDS-F-serratus_M_contig102:38181..38355 | 1622928819.00461-CDS-F-serratus_M_contig102:38181..38355 | Fucus serratus male | CDS | F-serratus_M_contig102 38182..38355 + |
1690962586.6420197-CDS-F-serratus_M_contig102:38181..38355 | 1690962586.6420197-CDS-F-serratus_M_contig102:38181..38355 | Fucus serratus male | CDS | F-serratus_M_contig102 38182..38355 + |
1622928819.0196157-CDS-F-serratus_M_contig102:39409..39503 | 1622928819.0196157-CDS-F-serratus_M_contig102:39409..39503 | Fucus serratus male | CDS | F-serratus_M_contig102 39410..39503 + |
1690962586.6495197-CDS-F-serratus_M_contig102:39409..39503 | 1690962586.6495197-CDS-F-serratus_M_contig102:39409..39503 | Fucus serratus male | CDS | F-serratus_M_contig102 39410..39503 + |
1622928819.0348217-CDS-F-serratus_M_contig102:39827..39870 | 1622928819.0348217-CDS-F-serratus_M_contig102:39827..39870 | Fucus serratus male | CDS | F-serratus_M_contig102 39828..39870 + |
1690962586.65684-CDS-F-serratus_M_contig102:39827..39870 | 1690962586.65684-CDS-F-serratus_M_contig102:39827..39870 | Fucus serratus male | CDS | F-serratus_M_contig102 39828..39870 + |
1622928819.0501792-CDS-F-serratus_M_contig102:40358..40420 | 1622928819.0501792-CDS-F-serratus_M_contig102:40358..40420 | Fucus serratus male | CDS | F-serratus_M_contig102 40359..40420 + |
1690962586.6649842-CDS-F-serratus_M_contig102:40358..40420 | 1690962586.6649842-CDS-F-serratus_M_contig102:40358..40420 | Fucus serratus male | CDS | F-serratus_M_contig102 40359..40420 + |
1622928819.0702348-CDS-F-serratus_M_contig102:40591..40694 | 1622928819.0702348-CDS-F-serratus_M_contig102:40591..40694 | Fucus serratus male | CDS | F-serratus_M_contig102 40592..40694 + |
1690962586.672356-CDS-F-serratus_M_contig102:40591..40694 | 1690962586.672356-CDS-F-serratus_M_contig102:40591..40694 | Fucus serratus male | CDS | F-serratus_M_contig102 40592..40694 + |
1622928819.0869935-CDS-F-serratus_M_contig102:41002..41230 | 1622928819.0869935-CDS-F-serratus_M_contig102:41002..41230 | Fucus serratus male | CDS | F-serratus_M_contig102 41003..41230 + |
1690962586.680066-CDS-F-serratus_M_contig102:41002..41230 | 1690962586.680066-CDS-F-serratus_M_contig102:41002..41230 | Fucus serratus male | CDS | F-serratus_M_contig102 41003..41230 + |
1622928819.0990732-CDS-F-serratus_M_contig102:41451..41526 | 1622928819.0990732-CDS-F-serratus_M_contig102:41451..41526 | Fucus serratus male | CDS | F-serratus_M_contig102 41452..41526 + |
1690962586.6890194-CDS-F-serratus_M_contig102:41451..41526 | 1690962586.6890194-CDS-F-serratus_M_contig102:41451..41526 | Fucus serratus male | CDS | F-serratus_M_contig102 41452..41526 + |
1622928819.111261-CDS-F-serratus_M_contig102:41768..41834 | 1622928819.111261-CDS-F-serratus_M_contig102:41768..41834 | Fucus serratus male | CDS | F-serratus_M_contig102 41769..41834 + |
1690962586.7006564-CDS-F-serratus_M_contig102:41768..41834 | 1690962586.7006564-CDS-F-serratus_M_contig102:41768..41834 | Fucus serratus male | CDS | F-serratus_M_contig102 41769..41834 + |
1622928819.124388-CDS-F-serratus_M_contig102:41992..42262 | 1622928819.124388-CDS-F-serratus_M_contig102:41992..42262 | Fucus serratus male | CDS | F-serratus_M_contig102 41993..42262 + |
1690962586.710235-CDS-F-serratus_M_contig102:41992..42262 | 1690962586.710235-CDS-F-serratus_M_contig102:41992..42262 | Fucus serratus male | CDS | F-serratus_M_contig102 41993..42262 + |
1622928819.1423855-CDS-F-serratus_M_contig102:42453..42660 | 1622928819.1423855-CDS-F-serratus_M_contig102:42453..42660 | Fucus serratus male | CDS | F-serratus_M_contig102 42454..42660 + |
1690962586.7178035-CDS-F-serratus_M_contig102:42453..42660 | 1690962586.7178035-CDS-F-serratus_M_contig102:42453..42660 | Fucus serratus male | CDS | F-serratus_M_contig102 42454..42660 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig102.258.1 >prot_F-serratus_M_contig102.258.1 ID=prot_F-serratus_M_contig102.258.1|Name=mRNA_F-serratus_M_contig102.258.1|organism=Fucus serratus male|type=polypeptide|length=448bp
MSREEQQRADVEGKIFLGGLTWQTTDEMLKTHFGKWGSLSDVILMRNKIT GEPRGFGFVQFQHASSADAALKEEHVIDGRTIDVKRAVPRDRAPQPRATT DRQFSSRGGSQIFVGGLDQEVNDSDFRAYFAKFGKVEDAVVMYDKKTGRS RGFGFITYDNPDVVRKVMSGGMHELKGKAVEVKTAAPRDGPRPFSGGGYS GSGGGGGYGGGYGGGGGGGYGGGGGYGSGGGGYGGQQGWSPQQGYGNRAG GYGQSGGYGSRGSYGGQGGYSDRSGYGGGGYSQGGDRSQQSYGYGGQQGY GYSQQSGYGGGGGGYGYGQQDQNYAAGGYSQQGYGQGQTAAQPSRTSSQT GSAGGYSQTSTAQGYGAQTGYSQGYGQQQGYGTTGQAASSSYGASYGTDT GNGSYGAGASTAAAGYGTAAVADQGGYGAYRGGGTTQSRQDRSYRPY* back to topmRNA from alignment at F-serratus_M_contig102:37112..43759+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig102.258.1 ID=mRNA_F-serratus_M_contig102.258.1|Name=mRNA_F-serratus_M_contig102.258.1|organism=Fucus serratus male|type=mRNA|length=6648bp|location=Sequence derived from alignment at F-serratus_M_contig102:37112..43759+ (Fucus serratus male) ACTGTGGCTGACCACGAGGAGGTGATTGCCCACCAGCCCACGAGCATGAT
GACGGATGAGGATCCCAACAACGGGGGCGGGGTGGTAAGAAATGCATTTA
GACGTTAATACGGACAATCGCCCAAGAATCCGTAAGTGTGAAGACACGGG
GCTGGGACGTTAATGTATACTGGTAGTGGTGTTTCCGGCATAACAAGTAT
GATGTTTTCCCGTAAGTTCATATCTGCCTCTTCTACATTTGCAACTCTAG
TTCACCCGCTGAAAAATTACTTCAGTAAAATAAAAATAACGGAATCGCAA
ATTTCATAAAAGTTCTGCTAAAATACGGAGGTAAAATAATGCTTGTTAAC
GTATCAGTATGCATGAATAAGTTCATGATGCATTTCCCCCGCTTTCCTCT
ATGAAACTGTTTGAAACCCACACCCGTAGAGTGATCTTCAGGTGAACGAT
GGGCAAGCCAATGGGAACACCAACGGAAACGGTGTGGCCGACGAGGCTGA
CGCCGCTCCCATTGTCTCCGCTGATGGAAACGATGGCAACCCTGGAAACG
ACGGCACCGACAAGAAGGATGAAATGTCCCGCGAAGAGCAGCAAAGTGAG
ATCTATCCCTACCTCGATGTTGGTTTGGTTTCTCAATCTGATCAAGTTGT
TTGTTCTTTTATTTTAGCCGCCGCAGGTTGTACGAAATCACCGAGCAGTT
GATAAAGAGGCTAGATTTATAGCGAATTATATACTGCGATTTAAGTAAAC
AAACGTGTTCCACCGGCAGGTTAAAGAAAAAATCGTCAAATAACTTCGGG
AAAATGTTGACCATCAAATTTTATTTTTAAAGTCAGTTGGGCGCAGGCAG
CCTTAATCTAACAGGGTATGATCATAGTGCATGAAAAGGGTCTCGGCAAG
AGTAGTTTGCTGAAGTAGATACGTCCGCATGTCTCCACACACCGCGAAAG
GTGTGAACTTGATAATTTCGGTTGTGATACAAAAGCCCGAGATCTACTTG
TTTACTGGCATTAACCTTGTTTTTTTCTGTGGATTTCGATGGTTTTTCTG
GTTTTCTGGGTGCGAAGCAGGGGCTGATGTGGAAGGTAAAATCTTCCTTG
GAGGCCTCACCTGGCAGACAACAGATGAAATGCTGAAGACGCACTTCGGA
AAGTGGGGCAGCCTTAGCGACGTAATCCTCATGCGCAACAAGATCACTGG
GGAGCCTCGTGGGTTCGGCTTCGTTCAGTTCCAGCACGCATCATGTGAGT
ATCTGTGGCTAAACCAATTGATTTTTTTTACAGTGTAATGTTTTGCGACG
CCCGTTACTGGAAATACCTTGGAGCTCGCGCCGGCGATTTCTCGGTAGTG
AACCCCAATTGAACTCAGTTGCGATACCTTGAAATGTTTAGAGCGACGGC
CGTATTTCATTTCGCGACCCTTAATTTCAGGCGAGAACGGTAGCGCACTG
AAACTTTCATAGTTCGTGTTTTTGCCGACCGCTGGAAATCTTCAATTTGC
CTTGAAAAAAAACAAAAATTATTCACATTTTTCTTTAAAAACACCATTGA
TTCGACGCTTAACTATAACTTCCATCACGAGACGAAATACTGATCTGTTT
GAAAACGCATGGCCAAACTTTTCAGCGTTTTTGACTTGAATTTGTCTGAT
CCTTGAGAGTAAAATTTCCGACACGTTTTTTCCAAGAGTCGGGCTAAAAA
TTATGGTGCGATCGATATTATTAGCGCGGGGTAAAAATCACTAATCTATG
GCTTTAAAGGCGCAGCAGCAGGCATTCAGGCAGAATTCGGGCCCACAGAG
CAAGGTTACGATGCAGTTTTGAGAGAAGAAAAGAGGCGGAGAGGGAAAGA
GCAGAGGGAAGCAGCTGAAGATAAAAAGAAAGCAGCAGCAGCAGGCAGCA
GTACTTCCGAGTTTACAGACCTCAGAGTCGATTGCGTACGGAAATGGCTT
CGGGGCAGAGTCTTCTACGTCTAAAGGGGGGTCGAAGAGGCCTACTCTCA
CTTCTTCTCCCGCTGCCCATTTTTTCCAGGATCTTGCAGCACGATTGTGG
AAAATGCAGATGCCCCCCGTCGATGATTCCCACCCGTTATGTTGATTCTG
TTCGTCACTTAAGTAACGTAATGTTCCATGCTGCTGTACGGGTACGTACT
GTACTGTACTGTAACGTACAGTTGTTCACTCCGCTGCTTGTACTGCCTTG
TATGTGATGCTTGTGTTTGTTGTATGTTCTTTGCCTCGTTGCGCTGCTTG
TCTGCTTTTGCCATCCGTCGTCGTGGACCGTGTACCTTGTTAATATAGCC
GCGGATGCTGCTCTCAAGGAAGAGCACGTGATAGATGGCAGGACCATAGA
CGTCAAGAGGGCTGTACCTAGGGACAGAGCACCGCAGCCTAGGTTGGTTA
GCGTCGCGTTTTCTGTCTCAAGTCGCACGGGGATTCAGGAAGACAGGCCT
TTGATTGGAGGGTGGTGATTTGAGGGGTGTTGACGTTTCCAGGTAGAGAG
AGAGACCTCTGAGCCACGTTGGCTACTTAAGCTCGCGGCTCAGACATACC
TAATTACTCTTGATTAACTTAAGCTGCTTGTCCGTCGTCCCCACCCCCGT
TCGCATTTTTTGTTTTGCTGGCGTGTCGTTTGGGCTCGTGATTCGACAAT
GGTCCCTGCCAACTCTGATACGGGTGATATCGGTGGCGTACGCTGATCTC
GGCGGGAAACTCTCAGGGCGACAACTGACCGGCAGTTCAGCAGCAGAGGC
GGGTCTCAGGTGGGCTCCGCCACGGCGGTATGAACGATGCCCCCTTACCA
ACAAGGTGAGACATCCTTATAGGTCCCACCAATCTAAACATGCCGTTTCA
AGAGTAAAACCGATCGATGTCCAAGAGATTACAGGCAAGGCTGACTTGTT
TTCCCTTGAATGTTGACAAGAAGTCAGGTTTGGTCTTATGGCCCAAACTA
TTAATAATACCTGGTAGTCTCGTACACTACAATCCAGCGTGATGGACGCT
TGAATGTTTGTTCGAAATACAAGGTAGAATATTTTTTACATAATGCTGAA
AACAAAGAGAACAGCGGGGAACTACTTTTCCTGTAATAATGGGTTTCAAA
AATGAGAAGACAGTGGTTTCGATCACTACAACCCAAGAGCTCCGCAGAAT
TTTTTTCTGCGAATTCATTTTTGCGCTTGCACTTTGCTTGATCGAAACTT
TCGGCGTTTTTCCCTCCGTGATTACAACCTTTCCTTTCTTATGACAGATT
TTTGTCGGCGGCCTTGACCAGGAAGTCAACGACAGCGACTTCAGGGCCTA
TTTTGCCAAGTAAGAAAGATTTTATCACCATTTCTTCTTATTTAAAAATT
TGCCTAATGTTGGGTCATCCAGGTTAAAATTCTTATTTATTTTAAACATT
TCATCTTCAACGCGAGTCTACTCTAACGTTTTGAGTGTTGAATGTGGAAG
ATCTAATTCAGGACTTTGTTTCTTCAACAGGTTTGGCAAGGTAGAGGATG
CCGTGGTTATGTACGACAAGAAGACTGGCAGGTCTCGAGGATTCGGtTTT
ATCACCTACGATAATCCTGATGTCGTCCGCAAGGTGGGTTGATTAAAGAT
GCTATTGATATGTATATAATGACACTGCCTCTGTGGCAAATTTCTTTGAA
CCTTCTCTACCGAAATTCTTTTTCGTATAAAAACGTTACGTAGCCAGTAA
AAAAGCCCAAATATTTAGTGCAAACATGGATTTGGCATTATTTTGACAAG
ATATTTACGGTGAGAAGAGCCGATGGAGTCCCTATCCCCTGTGTTTTTGA
TAATATGTGCGATTGCTATTAGTGTCAACATACCTCCAGCAGTGTAATTA
TCTTCATTTATGGTTTACAATGGTTTTCCGGACGGCTCCAGGTGATGAGC
GGGGGAATGCACGAGCTGAAAGGCAAGGCCGTGGAGGTCAAAACGGCTGC
TCCCCGAGACGGACCTCGACCCTTTAGCGGTGGTGGCTACAGTGGAAGCG
GTGGAGGAGGTGGTTACGGAGGAGGATACGGTGGTGGTGGTGGTGGAGGC
TATGGGGGTGGAGGAGGATACGGCAGCGGCGGTGGAGGCTACGGTGGGCA
GCAAGGATGGTCGCCGCAGGTTTGTCGATACTGGCTACTAGAATCCTATG
GTAAACAAATGATCAGGTTTTTATCGTTTTGCCCGTCTTGGACGCTTAAC
ATGTTGGCGACGGTGATTTTGGGACCACAGGAATCGGGTGTGGTTGGTCC
CCGTATTCAACTTAGCCTTTTCGGTGAGGTCTCGTGCGCGCTCCCGTCGG
TTAATTTAATATGCCTTGCGGCTCTTGTTTCGTTTTTCAGCAGGGGTACG
GTAATCGTGCAGGAGGTTACGGCCAGAGCGGAGGGTACGGTAGCAGGGGG
AGCTACGGCGGGCAGGTGCCATTATCACGTCCTTTCTGGAATTAGTGGTT
AATCTTACGGAAATCGATTAGAATTAGTGGTTGAGATTGACGGCAGTGAG
CATCTGATAAAAATCGATTGGAATCGCGGTCTCGTCTTGAAAGCAGTAAA
GTAGTTGCCTGTCACAGTCTCTCATGATCGCAGTATGATGAAATCATTTT
GAAAATCTATAAACCGCCAATTCACATTGTTGTTTTTCTCGTTTACCTCT
TTTGCAGGGGGGTTACAGCGACCGCAGCGGGTATGGTGGTGGAGGGTACA
GCCAGGGAGGGGATCGCTCACAGGTTCGTTGGTACAGTTTTATCTTGTCT
CTTCTACAAACAAACGCATGCCTTTTGGCCGTACATGCAACGCTCCGTCG
ATAAATACTCCCACGGTGTAATGTATTTTCAGTAACTCTGCAAACCCGTT
AACCGTTTACGCGCAATTCTCAATAATTCAGCAAAGCTATGGCTACGGTG
GACAGCAGGGCTACGGCTACAGCCAGCAGAGTGGCTACGGAGGCGGCGGT
GGAGGTTACGGCTACGGGCAGCAAGACCAAAACTACGCTGCCGGTGGTTA
CAGCCAACAGGGTTACGGGCAGGGTCAGACGGCTGCACAGCCCTCCCGCA
CGTCTTCTCAGACCGGTTCTGCTGGCGGTTACTCTCAGACCAGCACTGCC
CAAGGTTACGGAGCCCAGACCGGATACAGCCAGGGTTATGGCCAGCAACA
GGTAGGATTTCTGAAGCCCCCATACGTCAAGCTCGGAGGCAGTGCATGCC
AAATTATTTAACATCTGAGGAATATTATGTTGCTAATTAAAAAATATCAA
ATCAATATTTCGCCTTTCAAACTGTGCTTGTTTGAACCGATGTTTGACGG
AGAATGCCATCTCCACAATCCAAAACCCCTATCCTAAAATAGGGATATGG
TACGACCGGACAAGCAGCATCCAGCAGCTACGGCGCGTCTTACGGCACGG
ACACTGGCAACGGGAGCTACGGGGCTGGGGCTTCAACGGCTGCAGCCGGC
TACGGAACAGCCGCCGTTGCGGATCAGGGTGGATACGGCGCTTACCGTGG
TGGCGGAACTACGCAAAGTCGCCAGGACAGGAGCTACAGGCCCTATTAAA
TACGAACGGAGGCTCTGGAAGGCGTTGTGCAAGGTTGTGGAAAGAGGAAT
GATTCCTTGCTGGAGAAAGAAAATGGTTTCAAGACATTCAGCGATAGTTC
TTGGAACGCCATCTGCCGCTTACTACTGAAGAAAGATTCGCAGAGATTGC
TTTTCATGATACGCTTTAGTTTGCTCAAGCCGTTTTCGCTTTCCTGATAC
TTCGCGTTCTTAACGGGAGATTGAGAGTATCCACTTTCATGTTGTGACCT
TACCTGCTAGGACTATGTCGGTCGAGTGGAGCTCAAAATACAAGATCTTT
GGACCGCCTCAGTTAGCATAAATATAAAAGTCGCGCGAATGATCTAACGG
TATGTTCGATGCGGTCGACTTGGAGGTACTTGGCTGCAGTAGTAAAAGGC
AGGGAAGTGAGACGCGCTATTCGGGCTTTTAATCTGACAGATGCTAGAAA
CCTCACACATAACCTGTAGTTGTGACGCGCAAACTTTGTAGAAAGTTCAC
TAGCCTTTAGCTGTAGGAAAATATACTCGACGCGTATTTGTCATTTCCCG
AGCCCCGTACCACCGTTGAATGCGTTATTGAACCTCCCAACAACGTTGTG
TGAAAACGCGAATTTATTTTTTTACATCTAAATAAAGTTCGTGTTACTAC
GTGATGTGAGCTTTTGGTCCTTTTTTTGTCCTAAACGGAGGAAAGTAATT
TCAGTTGATTCCTTCAGAATTGGGTATTTTTTTATGTCTCTCTTTTATGC
CCTCCCATCACCAATTGTATATTTATATTCAGATACCGTTTTATGTTGTG
TTGCATTTTAACAGGTAGACATGAGGGTTTGAATCTAAAGAGAGAATGTA
TTTTCTGGTTACTTTAGAATCCATCTCGAGGTGCGATTTTCGCGGGCCGT
GCCACAGCAGTAGGGACCGATCGAGTGAAACACGTTTTTACCCGTGTAGT
ATATATTTTTGTATGTGACCTGGACATGGGTAAAACAATGAAAAAATTCA
AAGGTGCCTCATGTCACAAAAAACTTGCTCTTACCGTGTACAGGAAGCCT
CGATTTGAAGCCTAAAGCTTATGAACGAAAATGGACGGAAACACTAAA back to topCoding sequence (CDS) from alignment at F-serratus_M_contig102:37112..43759+ >mRNA_F-serratus_M_contig102.258.1 ID=mRNA_F-serratus_M_contig102.258.1|Name=mRNA_F-serratus_M_contig102.258.1|organism=Fucus serratus male|type=CDS|length=2688bp|location=Sequence derived from alignment at F-serratus_M_contig102:37112..43759+ (Fucus serratus male) ATGTCCCGCGAAGAGCAGCAAAATGTCCCGCGAAGAGCAGCAAAGGGCTG ATGTGGAAGGTAAAATCTTCCTTGGAGGCCTCACCTGGCAGACAACAGAT GAAATGCTGAAGACGCACTTCGGAAAGTGGGGCAGCCTTAGCGACGTAAT CCTCATGCGCAACAAGATCACTGGGGAGCCTCGTGGGTTCGGCTTCGTTC AGTTCCAGCACGCATCATGGGCTGATGTGGAAGGTAAAATCTTCCTTGGA GGCCTCACCTGGCAGACAACAGATGAAATGCTGAAGACGCACTTCGGAAA GTGGGGCAGCCTTAGCGACGTAATCCTCATGCGCAACAAGATCACTGGGG AGCCTCGTGGGTTCGGCTTCGTTCAGTTCCAGCACGCATCATCCGCGGAT GCTGCTCTCAAGGAAGAGCACGTGATAGATGGCAGGACCATAGACGTCAA GAGGGCTGTACCTAGGGACAGAGCACCGCAGCCTAGCCGCGGATGCTGCT CTCAAGGAAGAGCACGTGATAGATGGCAGGACCATAGACGTCAAGAGGGC TGTACCTAGGGACAGAGCACCGCAGCCTAGGGCGACAACTGACCGGCAGT TCAGCAGCAGAGGCGGGTCTCAGGGCGACAACTGACCGGCAGTTCAGCAG CAGAGGCGGGTCTCAGATTTTTGTCGGCGGCCTTGACCAGGAAGTCAACG ACAGCGACTTCAGGGCCTATTTTGCCAAATTTTTGTCGGCGGCCTTGACC AGGAAGTCAACGACAGCGACTTCAGGGCCTATTTTGCCAAGTTTGGCAAG GTAGAGGATGCCGTGGTTATGTACGACAAGAAGACTGGCAGGTCTCGAGG ATTCGGtTTTATCACCTACGATAATCCTGATGTCGTCCGCAAGGTTTGGC AAGGTAGAGGATGCCGTGGTTATGTACGACAAGAAGACTGGCAGGTCTCG AGGATTCGGtTTTATCACCTACGATAATCCTGATGTCGTCCGCAAGGTGA TGAGCGGGGGAATGCACGAGCTGAAAGGCAAGGCCGTGGAGGTCAAAACG GCTGCTCCCCGAGACGGACCTCGACCCTTTAGCGGTGGTGGCTACAGTGG AAGCGGTGGAGGAGGTGGTTACGGAGGAGGATACGGTGGTGGTGGTGGTG GAGGCTATGGGGGTGGAGGAGGATACGGCAGCGGCGGTGGAGGCTACGGT GGGCAGCAAGGATGGTCGCCGCAGGTGATGAGCGGGGGAATGCACGAGCT GAAAGGCAAGGCCGTGGAGGTCAAAACGGCTGCTCCCCGAGACGGACCTC GACCCTTTAGCGGTGGTGGCTACAGTGGAAGCGGTGGAGGAGGTGGTTAC GGAGGAGGATACGGTGGTGGTGGTGGTGGAGGCTATGGGGGTGGAGGAGG ATACGGCAGCGGCGGTGGAGGCTACGGTGGGCAGCAAGGATGGTCGCCGC AGCAGGGGTACGGTAATCGTGCAGGAGGTTACGGCCAGAGCGGAGGGTAC GGTAGCAGGGGGAGCTACGGCGGGCAGCAGGGGTACGGTAATCGTGCAGG AGGTTACGGCCAGAGCGGAGGGTACGGTAGCAGGGGGAGCTACGGCGGGC AGGGGGGTTACAGCGACCGCAGCGGGTATGGTGGTGGAGGGTACAGCCAG GGAGGGGATCGCTCACAGGGGGGTTACAGCGACCGCAGCGGGTATGGTGG TGGAGGGTACAGCCAGGGAGGGGATCGCTCACAGCAAAGCTATGGCTACG GTGGACAGCAGGGCTACGGCTACAGCCAGCAGAGTGGCTACGGAGGCGGC GGTGGAGGTTACGGCTACGGGCAGCAAGACCAAAACTACGCTGCCGGTGG TTACAGCCAACAGGGTTACGGGCAGGGTCAGACGGCTGCACAGCCCTCCC GCACGTCTTCTCAGACCGGTTCTGCTGGCGGTTACTCTCAGACCAGCACT GCCCAAGGTTACGGAGCCCAGACCGGATACAGCCAGGGTTATGGCCAGCA ACAGCAAAGCTATGGCTACGGTGGACAGCAGGGCTACGGCTACAGCCAGC AGAGTGGCTACGGAGGCGGCGGTGGAGGTTACGGCTACGGGCAGCAAGAC CAAAACTACGCTGCCGGTGGTTACAGCCAACAGGGTTACGGGCAGGGTCA GACGGCTGCACAGCCCTCCCGCACGTCTTCTCAGACCGGTTCTGCTGGCG GTTACTCTCAGACCAGCACTGCCCAAGGTTACGGAGCCCAGACCGGATAC AGCCAGGGTTATGGCCAGCAACAGGGATATGGTACGACCGGACAAGCAGC ATCCAGCAGCTACGGCGCGTCTTACGGCACGGACACTGGCAACGGGAGCT ACGGGGCTGGGGCTTCAACGGCTGCAGCCGGCTACGGAACAGCCGCCGTT GCGGATCAGGGTGGATACGGCGCTTACCGTGGTGGCGGAACTACGCAAAG TCGCCAGGACAGGAGCTACAGGCCCTATTAAGGATATGGTACGACCGGAC AAGCAGCATCCAGCAGCTACGGCGCGTCTTACGGCACGGACACTGGCAAC GGGAGCTACGGGGCTGGGGCTTCAACGGCTGCAGCCGGCTACGGAACAGC CGCCGTTGCGGATCAGGGTGGATACGGCGCTTACCGTGGTGGCGGAACTA CGCAAAGTCGCCAGGACAGGAGCTACAGGCCCTATTAA back to top
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