mRNA_F-serratus_M_contig1017.254.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1017.254.1
Unique NamemRNA_F-serratus_M_contig1017.254.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1017.254.1 vs. uniprot
Match: D8LQZ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQZ7_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 4.490e-41
Identity = 77/122 (63.11%), Postives = 86/122 (70.49%), Query Frame = 2 
Query:  104 PLSPWEMELAKVAGTWKGSGAITDEKERCRQWCQMAKASLGPPRDRXXXXXXXXXXXXXXXXXXXXRLRKLIDAAELNMSFFLVPGLSDKQVLRIQRLVYGVETALLRLDAASARPPPVASF 469
            PLSPWEMELAK AGTW+G+G + DEKERCRQWC +AKASL                          RLR+L+DAAELN SFFLVPGL+DKQVLR+QRLVY VETA   L+AA ARPPPVASF
Sbjct:   87 PLSPWEMELAKAAGTWEGTGGVGDEKERCRQWCMIAKASLQAEEKEREKDNRRGEGKLTGGTARHQRLRQLVDAAELNSSFFLVPGLNDKQVLRVQRLVYKVETAFSSLEAARARPPPVASF 208
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BLAST of mRNA_F-serratus_M_contig1017.254.1 vs. uniprot
Match: A0A6H5L231_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L231_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.210e-12
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 2 
Query:  104 PLSPWEMELAKVAGTWKGSGAITDEKERCRQWCQMAKASL 223
            PLSPWEMELAK AGTW+G G + DEKERCRQWC +AKASL
Sbjct:  555 PLSPWEMELAKAAGTWEGPGGVGDEKERCRQWCMIAKASL 594
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1017.254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQZ7_ECTSI4.490e-4163.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L231_9PHAE1.210e-1280.00Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1017contigF-serratus_M_contig1017:236154..238619 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size733
Cds size720
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1017.254.1prot_F-serratus_M_contig1017.254.1Fucus serratus malepolypeptideF-serratus_M_contig1017 236154..238606 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928817.4803586-CDS-F-serratus_M_contig1017:236153..2365101622928817.4803586-CDS-F-serratus_M_contig1017:236153..236510Fucus serratus maleCDSF-serratus_M_contig1017 236154..236510 -
1690962585.9594889-CDS-F-serratus_M_contig1017:236153..2365101690962585.9594889-CDS-F-serratus_M_contig1017:236153..236510Fucus serratus maleCDSF-serratus_M_contig1017 236154..236510 -
1622928817.4944613-CDS-F-serratus_M_contig1017:237216..2373301622928817.4944613-CDS-F-serratus_M_contig1017:237216..237330Fucus serratus maleCDSF-serratus_M_contig1017 237217..237330 -
1690962585.9688232-CDS-F-serratus_M_contig1017:237216..2373301690962585.9688232-CDS-F-serratus_M_contig1017:237216..237330Fucus serratus maleCDSF-serratus_M_contig1017 237217..237330 -
1622928817.5122516-CDS-F-serratus_M_contig1017:238357..2386061622928817.5122516-CDS-F-serratus_M_contig1017:238357..238606Fucus serratus maleCDSF-serratus_M_contig1017 238358..238606 -
1690962585.9769027-CDS-F-serratus_M_contig1017:238357..2386061690962585.9769027-CDS-F-serratus_M_contig1017:238357..238606Fucus serratus maleCDSF-serratus_M_contig1017 238358..238606 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928817.5505822-UTR-F-serratus_M_contig1017:238606..2386191622928817.5505822-UTR-F-serratus_M_contig1017:238606..238619Fucus serratus maleUTRF-serratus_M_contig1017 238607..238619 -
1690962585.9848175-UTR-F-serratus_M_contig1017:238606..2386191690962585.9848175-UTR-F-serratus_M_contig1017:238606..238619Fucus serratus maleUTRF-serratus_M_contig1017 238607..238619 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1017.254.1

>prot_F-serratus_M_contig1017.254.1 ID=prot_F-serratus_M_contig1017.254.1|Name=mRNA_F-serratus_M_contig1017.254.1|organism=Fucus serratus male|type=polypeptide|length=240bp
MELDEAEPPLPPPPPPARLLQLPPPPPPLPPLSPWEMELAKVAGTWKGSG
AITDEKERCRQWCQMAKASLGPPRDREREKEGHAAAAKDKDKDRRQRLRK
LIDAAELNMSFFLVPGLSDKQVLRIQRLVYGVETALLRLDAASARPPPVA
SFDQSAGSGPESATTRPGASRRDGSGGMSGRGAGRSGSGVSNSNNSSRDS
RAAGSGDPRQRRPWGEHHRLEEEEPGNVDEAPKTVPKPPR
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mRNA from alignment at F-serratus_M_contig1017:236154..238619-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1017.254.1 ID=mRNA_F-serratus_M_contig1017.254.1|Name=mRNA_F-serratus_M_contig1017.254.1|organism=Fucus serratus male|type=mRNA|length=2466bp|location=Sequence derived from alignment at F-serratus_M_contig1017:236154..238619- (Fucus serratus male)
AGGGGTGGTGGCAATGGAATTGGATGAGGCGGAACCACCGCTGCCTCCGC
CGCCGCCGCCCGCCCGGTTGCTGCAGCTTCCGCCGCCTCCGCCGCCGCTG
CCGCCGCTGTCACCGTGGGAGATGGAGCTGGCCAAGGTGGCGGGTACTTG
GAAGGGCTCCGGCGCTATCACGGACGAGAAGGAGAGGTGCAGGCAGTGGT
GCCAGATGGCGAAGGCGTCGCTCGGACCTCCGAGAGACAGGGAGAGGGAG
AAGGAGGGACACGTGAGTACTAGTATACTAGTGTTAGTGTTGGTGTGGCG
GTCTCTTGGTCGTACTTTTTCGCAGGGTGCGCGCCGCGTCGTTGTTGCTT
TTGCCCTTTCTTTTTGCTGTGTTGGGGGGGGAGGTGTGGCGTGTGGCGTG
ACTGCTTTTGCGTGGGCGGAATGCATCGGAGGGTGGTTTCGAGTAATAAG
TCAATCCGTTACTTTTTTTAGTGCTCCCGGGTTTGGTTTGGTATGGTTTC
TTCGCGCTTGATGGACGAAGATGTTGAATTTTGGCTCCTTCTGTGTGCTG
CAGTTGAAAGCAAAGCCAAGCTGTGATGGTTAGACAGACTATCGAGGGGT
GAGAGCCTTCGTGCGCAAGTAAATGGGGAAGTAAGCAGCGATCCGCGGGT
AGATGGGCTGGTTAAAAAATGGACGAGTAAATAATGACCAAGGAGGTGAG
GGCATGTACAAGGAAATGTACTAATAGGAATTTCACAAGATTAAATATAG
TAGGAAATGAACAAGTTGCGAGTGTACCGCAAAGTGCACGAAGAACTGTT
CAAGTATACTATGAATAGTACATAATGCATACGTAAATGCAAAATTAATG
TACACGCCAGGTGGTACTGTTGTATAGTCGAAGAAATGGGGGGCGTGTAT
AGTCGAAATAAGGTGTTCGTGGGAGGGAGGTGTCGCATTCGATGGGATGG
TGTTTGGTGTGTATTTTTGTTTGATAAGGTTTCGTCGATGTTAGCTGTTT
TTTGTTGTGGTTGCTATTTTATATCGATGTTAGCTGATTACGATCTTTAT
CCATTTGGTATACTTGTAGCATCACTATGATTAGGACTATGACTGTGATT
AGAACTATGACTGTGGTTAACACTATGACTGTGAGTATGATCATGACTTA
TCAATAGTATTCGTACTTTTACGGCGTATGATAAGTCGACCATCTGTGCC
TCCTGGGTTTGTCTGTCGCGAGATAAACCTTTTTACCGCAGCAATATGAC
TCGACTTGACTTGACATGACATGGCATGGCATTGATCAGGCGGCTGCGGC
TAAGGACAAGGACAAGGATCGGCGGCAGCGATTGCGAAAGCTCATCGATG
CGGCGGAGCTCAACATGTCGTTCTTTTTGGTGCCGGGGCTAAGCGACAAA
CAGGTGATGGGGAGATGGTTTGTACTGTGTATAAGAGGGCGCACGCGGCT
TTCAAAGCTTTTGCCTCAATAAAAGAAGGGAAGCTACTACCCTGTATAAT
CGGCAAAATATAGGAGGCCATCTCACGTCGTGAAAATTAGTAGGCATTTT
ACATGACCGAAACGACTTCTATTAATTAGTAGTGGACATATTCACATATC
ATGAAGTGTGTATAGCTATTCATAGTAATAATAGACATGTTGCGTTATAA
AAGATGATAGAGTAGCCATGTTAACACCAATAGAAGCCAGAAGGCATTTT
TTTTTTTTTTTTGGCATGAATGCTGTGCGTCTGTGTAAATTGTTGATGTC
ATATATCGGTTTGAATGCTGCTCTTGTTGATATCGACGATGCTGTTGGGA
TACAGCCCTCTGCGTGTGTCGTCCGTTGCCGCTTGGATGTTGTCGATGGC
GACGTCGACCACCAGAGAGAGCTAAATAGTTTGTGTCTCCTTCGACTTAA
GTCCCAGCTCGTCATCCTTCCCACCCATTGACCCACTCATCCACCGACCC
ACCAATCGACTGACCCATTGACGCTACCACCTCCAGGTCCAGGGCGCCGT
TTGTGTCACGATTTTCTTTTCGTTTATTGCGTTTTGCCATTTTTGGGGGC
GTCGATTTTTTTTTTTTTTCGTCTTGATTTTTTATTTCTTCTTTTTTTTT
TGTGCACAGGTGCTCCGAATCCAGCGCCTCGTGTACGGTGTAGAAACCGC
GCTCCTTCGCCTCGATGCCGCCAGCGCCCGACCTCCACCGGTGGCGTCCT
TCGACCAGTCCGCCGGATCAGGACCCGAATCCGCAACCACGCGTCCCGGT
GCGTCTCGGCGCGATGGTAGCGGCGGCATGAGTGGGAGAGGCGCAGGGCG
AAGTGGAAGCGGGGTTAGTAATAGTAATAACAGTTCAAGAGATTCGAGGG
CGGCGGGGAGCGGGGATCCTCGGCAGCGCCGGCCGTGGGGGGAGCATCAT
CGGCTGGAGGAGGAGGAACCGGGGAACGTCGATGAAGCGCCCAAGACCGT
CCCAAAGCCCCCACGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1017:236154..238619-

>mRNA_F-serratus_M_contig1017.254.1 ID=mRNA_F-serratus_M_contig1017.254.1|Name=mRNA_F-serratus_M_contig1017.254.1|organism=Fucus serratus male|type=CDS|length=1440bp|location=Sequence derived from alignment at F-serratus_M_contig1017:236154..238619- (Fucus serratus male)
ATGGAATTGGATGAGGCGGAACCACCGCTGCCTCCGCCGCCGCCGCCCGC
CCGGTTGCTGCAGCTTCCGCCGCCTCCGCCGCCGCTGCCGCCGCTGTCAC
CGTGGGAGATGGAGCTGGCCAAGGTGGCGGGTACTTGGAAGGGCTCCGGC
GCTATCACGGACGAGAAGGAGAGGTGCAGGCAGTGGTGCCAGATGGCGAA
GGCGTCGCTCGGACCTCCGAGAGACAGGGAGAGGGAGAAGGAGGGACACA
TGGAATTGGATGAGGCGGAACCACCGCTGCCTCCGCCGCCGCCGCCCGCC
CGGTTGCTGCAGCTTCCGCCGCCTCCGCCGCCGCTGCCGCCGCTGTCACC
GTGGGAGATGGAGCTGGCCAAGGTGGCGGGTACTTGGAAGGGCTCCGGCG
CTATCACGGACGAGAAGGAGAGGTGCAGGCAGTGGTGCCAGATGGCGAAG
GCGTCGCTCGGACCTCCGAGAGACAGGGAGAGGGAGAAGGAGGGACACGC
GGCTGCGGCTAAGGACAAGGACAAGGATCGGCGGCAGCGATTGCGAAAGC
TCATCGATGCGGCGGAGCTCAACATGTCGTTCTTTTTGGTGCCGGGGCTA
AGCGACAAACAGGCGGCTGCGGCTAAGGACAAGGACAAGGATCGGCGGCA
GCGATTGCGAAAGCTCATCGATGCGGCGGAGCTCAACATGTCGTTCTTTT
TGGTGCCGGGGCTAAGCGACAAACAGGTGCTCCGAATCCAGCGCCTCGTG
TACGGTGTAGAAACCGCGCTCCTTCGCCTCGATGCCGCCAGCGCCCGACC
TCCACCGGTGGCGTCCTTCGACCAGTCCGCCGGATCAGGACCCGAATCCG
CAACCACGCGTCCCGGTGCGTCTCGGCGCGATGGTAGCGGCGGCATGAGT
GGGAGAGGCGCAGGGCGAAGTGGAAGCGGGGTTAGTAATAGTAATAACAG
TTCAAGAGATTCGAGGGCGGCGGGGAGCGGGGATCCTCGGCAGCGCCGGC
CGTGGGGGGAGCATCATCGGCTGGAGGAGGAGGAACCGGGGAACGTCGAT
GAAGCGCCCAAGACCGTCCCAAAGCCCCCACGGGTGCTCCGAATCCAGCG
CCTCGTGTACGGTGTAGAAACCGCGCTCCTTCGCCTCGATGCCGCCAGCG
CCCGACCTCCACCGGTGGCGTCCTTCGACCAGTCCGCCGGATCAGGACCC
GAATCCGCAACCACGCGTCCCGGTGCGTCTCGGCGCGATGGTAGCGGCGG
CATGAGTGGGAGAGGCGCAGGGCGAAGTGGAAGCGGGGTTAGTAATAGTA
ATAACAGTTCAAGAGATTCGAGGGCGGCGGGGAGCGGGGATCCTCGGCAG
CGCCGGCCGTGGGGGGAGCATCATCGGCTGGAGGAGGAGGAACCGGGGAA
CGTCGATGAAGCGCCCAAGACCGTCCCAAAGCCCCCACGG
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