mRNA_F-serratus_M_contig1016.252.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1016.252.1
Unique NamemRNA_F-serratus_M_contig1016.252.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1016.252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1016contigF-serratus_M_contig1016:253294..255491 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size907
Cds size534
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1016.252.1prot_F-serratus_M_contig1016.252.1Fucus serratus malepolypeptideF-serratus_M_contig1016 253299..255123 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928817.123276-UTR-F-serratus_M_contig1016:253293..2532981622928817.123276-UTR-F-serratus_M_contig1016:253293..253298Fucus serratus maleUTRF-serratus_M_contig1016 253294..253298 +
1690962585.7856443-UTR-F-serratus_M_contig1016:253293..2532981690962585.7856443-UTR-F-serratus_M_contig1016:253293..253298Fucus serratus maleUTRF-serratus_M_contig1016 253294..253298 +
1622928817.1890852-UTR-F-serratus_M_contig1016:255123..2554911622928817.1890852-UTR-F-serratus_M_contig1016:255123..255491Fucus serratus maleUTRF-serratus_M_contig1016 255124..255491 +
1690962585.817888-UTR-F-serratus_M_contig1016:255123..2554911690962585.817888-UTR-F-serratus_M_contig1016:255123..255491Fucus serratus maleUTRF-serratus_M_contig1016 255124..255491 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928817.1615496-CDS-F-serratus_M_contig1016:253298..2538221622928817.1615496-CDS-F-serratus_M_contig1016:253298..253822Fucus serratus maleCDSF-serratus_M_contig1016 253299..253822 +
1690962585.7964332-CDS-F-serratus_M_contig1016:253298..2538221690962585.7964332-CDS-F-serratus_M_contig1016:253298..253822Fucus serratus maleCDSF-serratus_M_contig1016 253299..253822 +
1622928817.1754766-CDS-F-serratus_M_contig1016:255113..2551231622928817.1754766-CDS-F-serratus_M_contig1016:255113..255123Fucus serratus maleCDSF-serratus_M_contig1016 255114..255123 +
1690962585.8088012-CDS-F-serratus_M_contig1016:255113..2551231690962585.8088012-CDS-F-serratus_M_contig1016:255113..255123Fucus serratus maleCDSF-serratus_M_contig1016 255114..255123 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1016.252.1

>prot_F-serratus_M_contig1016.252.1 ID=prot_F-serratus_M_contig1016.252.1|Name=mRNA_F-serratus_M_contig1016.252.1|organism=Fucus serratus male|type=polypeptide|length=178bp
MAPPDARVHFATAGSWSLVAPRRQKPPPDPYEDLRISRLRHVNKYFSANI
RQETKEVAIRVEAAFQEFGSNHCCVARAIKLATAPGTKLSEPLRTDILRL
RDLLDRAYGSPSGAEWIQDAPRQTASSGSDTSSSVGPRRCEEPSSGRGNS
KKASITSDSEDNQQESRGRYFRDRRKG*
back to top

mRNA from alignment at F-serratus_M_contig1016:253294..255491+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1016.252.1 ID=mRNA_F-serratus_M_contig1016.252.1|Name=mRNA_F-serratus_M_contig1016.252.1|organism=Fucus serratus male|type=mRNA|length=2198bp|location=Sequence derived from alignment at F-serratus_M_contig1016:253294..255491+ (Fucus serratus male)
ACCCCATGGCCCCACCAGACGCCCGTGTCCATTTCGCCACGGCCGGCTCC
TGGTCCCTTGTCGCTCCCCGTCGACAAAAACCGCCCCCCGACCCCTACGA
GGATCTCCGTATCTCCCGACTGAGGCACGTGAACAAGTACTTCTCTGCGA
ACATCCGCCAGGAAACTAAAGAGGTCGCTATCCGCGTCGAAGCAGCCTTC
CAAGAATTTGGGAGCAATCACTGTTGTGTCGCTCGCGCCATCAAGTTGGC
CACCGCACCGGGCACCAAGCTGAGCGAACCGCTGCGCACCGATATCTTGC
GCCTCCGCGACCTCCTCGATAGGGCGTACGGCTCTCCGTCTGGCGCCGAA
TGGATCCAGGATGCCCCCCGCCAGACCGCTTCCTCGGGGAGCGACACCTC
TTCTTCTGTGGGACCCCGACGCTGCGAGGAGCCATCTAGCGGACGGGGTA
ACTCTAAAAAGGCGTCCATTACCTCGGATAGCGAGGACAACCAGCAGGAA
TCTCGAGGACGCTATTTTCGGGACCGTAGGCAAGTGCCAAAATTTTACCA
TTCCAGCGACGACAGCGATACCCCTTGTTTTCCCCCGCGTATTTTTCAGT
ACCGCACGCACTCACGGCGACAGCGCACATGCGCACCCCCTCGCGCGGCC
GCCCCCGCTGACGCCCCCCCCCCATCGTTACAAAACATAATTCAAGCAGC
CACCACGGCAGCAATTGCCGCCGTGGACCACCAACTGGCCACATTAGGGT
TGCTCCCGCGACCAGACCCCGAACATACGTCCGACACAGTATTCCACCAT
CGCTCTCGCGCACATCCCCCGGTATCGCCTCCCCCACTGACGGTACCGGT
ACCCCCGCCCACCGATCCCCCTGGAGTACAGTACCCCGTAGGTAGCACCG
CCCATATACCGTACTCCGTTAATTTTTGTCCCCCCTTAGGTCCCCACAAT
GCAGAAGTACCCCAGCAGACTGTCGATCCCTCTTGAGTACAGTACCCAGT
AGGGAACACCGCTCATATACCGTACTCCCTTAATTTTTGTCCCCCCGTAG
GCCTCGACAATATAGAATTACAGTACCCCGTAGCGAGCACCGCCCATATA
CCGCATTCCCAAAACTTTTGTCCCCCCGTAGGCCTCGACAATATAGAATT
ACAGTACCCCGTAGCGAGCACCGCCCATGTACCGCATTCCCAACATCTTC
GTCCCCCCATAGCCCCCGACTCCAGAAACATTCCCCCACAGATTGTCGCT
CCCCCGGGTCAGATGGGTACTGTAAACCCTCTCACCCACCCCCCCCCCGC
GTACCGCACCCCATAGTGAACACCGCTGGTGTACAGTACCCCGTGGCAAA
TACAACGCATGTACTGTATCCCCCACGGCCCCCGTTGGTGCACCGCACCC
CTTTCCAACGCCCCCCCGAGGCTGGCTCCGACAGACGAGCGCCCCTTGTT
TGACGACAGTTCATGCAACAGCTCACAACCACCCAACCCTTCGGGCCCCC
GCCCGGACTTCGTCGCCCACGTACAGGCTGCCTTTCGCACCCTCGACACG
CGCAGAATTCCCCGCATCCAACCATTGCAGTTCCCCCCTTCCGCGGACAG
AACTGCCGCTACTCAATTCTTGACTCGCTCTATCCGCGACGCGCTGTCAG
GGATCTTTGACGTCGCTGATCCCACCGGAACTGTGACCATGGACTCCCCT
GTTTGGATTCCCGGGTGGCATGCACCACTTCTCAAGTTGGTCAAAGCGGC
TATCATTGCTAACCGCGACGACACCCATGACCTACACCGCCTCGTCGATG
ACTTGTTCTCTCAACTACAGGAAAGGCTAAGCTCCGATTCCGGCGGTCCA
GACGCGTTCAAGACGCTGCTCACGGATTTCGCCGATTATTTCGACAGAGC
ACCACGTGGAGCTGCGCTCGAGACTCTACAGAGATTTGGCGTTCGTACGG
GAACTCCATTCTCTAGTTACCTACGGGCCCTTCGCGTTGTCGTAGCCAGT
ACAGTAGAGAAAGGCGGCCCGTTAGCGCCTTCCGCGACGATGGCCATAGA
ACTCATCAGGATACGTACGGCTCAACAGTATCCTACGTTGATGCCCACTT
TGTTCCCAGGCGATAGAGCTACTAGGGAAAGCCCGTATGCTTCACTAGCC
TTATTATGGACTGCATTCGCTGATCTTAAACATAATACTTCACCCGCC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1016:253294..255491+

>mRNA_F-serratus_M_contig1016.252.1 ID=mRNA_F-serratus_M_contig1016.252.1|Name=mRNA_F-serratus_M_contig1016.252.1|organism=Fucus serratus male|type=CDS|length=1068bp|location=Sequence derived from alignment at F-serratus_M_contig1016:253294..255491+ (Fucus serratus male)
ATGGCCCCACCAGACGCCCGTGTCCATTTCGCCACGGCCGGCTCCTGGTC
CCTTGTCGCTCCCCGTCGACAAAAACCGCCCCCCGACCCCTACGAGGATC
TCCGTATCTCCCGACTGAGGCACGTGAACAAGTACTTCTCTGCGAACATC
CGCCAGGAAACTAAAGAGGTCGCTATCCGCGTCGAAGCAGCCTTCCAAGA
ATTTGGGAGCAATCACTGTTGTGTCGCTCGCGCCATCAAGTTGGCCACCG
CACCGGGCACCAAGCTGAGCGAACCGCTGCGCACCGATATCTTGCGCCTC
CGCGACCTCCTCGATAGGGCGTACGGCTCTCCGTCTGGCGCCGAATGGAT
CCAGGATGCCCCCCGCCAGACCGCTTCCTCGGGGAGCGACACCTCTTCTT
CTGTGGGACCCCGACGCTGCGAGGAGCCATCTAGCGGACGGGGTAACTCT
AAAAAGGCGTCCATTACCTCGGATAGCGAGGACAACCAGCAGGAATCTCG
AGGACGCTATTTTCGGGACCGTAGATGGCCCCACCAGACGCCCGTGTCCA
TTTCGCCACGGCCGGCTCCTGGTCCCTTGTCGCTCCCCGTCGACAAAAAC
CGCCCCCCGACCCCTACGAGGATCTCCGTATCTCCCGACTGAGGCACGTG
AACAAGTACTTCTCTGCGAACATCCGCCAGGAAACTAAAGAGGTCGCTAT
CCGCGTCGAAGCAGCCTTCCAAGAATTTGGGAGCAATCACTGTTGTGTCG
CTCGCGCCATCAAGTTGGCCACCGCACCGGGCACCAAGCTGAGCGAACCG
CTGCGCACCGATATCTTGCGCCTCCGCGACCTCCTCGATAGGGCGTACGG
CTCTCCGTCTGGCGCCGAATGGATCCAGGATGCCCCCCGCCAGACCGCTT
CCTCGGGGAGCGACACCTCTTCTTCTGTGGGACCCCGACGCTGCGAGGAG
CCATCTAGCGGACGGGGTAACTCTAAAAAGGCGTCCATTACCTCGGATAG
CGAGGACAACCAGCAGGAATCTCGAGGACGCTATTTTCGGGACCGTAGGA
AAGGCTAAGAAAGGCTAA
back to top