mRNA_F-serratus_M_contig1016.251.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1016.251.1
Unique NamemRNA_F-serratus_M_contig1016.251.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1016.251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1016contigF-serratus_M_contig1016:246554..249979 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1142
Cds size633
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1016.251.1prot_F-serratus_M_contig1016.251.1Fucus serratus malepolypeptideF-serratus_M_contig1016 249270..249902 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928817.278684-UTR-F-serratus_M_contig1016:246553..2468561622928817.278684-UTR-F-serratus_M_contig1016:246553..246856Fucus serratus maleUTRF-serratus_M_contig1016 246554..246856 -
1690962585.8446116-UTR-F-serratus_M_contig1016:246553..2468561690962585.8446116-UTR-F-serratus_M_contig1016:246553..246856Fucus serratus maleUTRF-serratus_M_contig1016 246554..246856 -
1622928817.2920039-UTR-F-serratus_M_contig1016:249140..2492691622928817.2920039-UTR-F-serratus_M_contig1016:249140..249269Fucus serratus maleUTRF-serratus_M_contig1016 249141..249269 -
1690962585.8542507-UTR-F-serratus_M_contig1016:249140..2492691690962585.8542507-UTR-F-serratus_M_contig1016:249140..249269Fucus serratus maleUTRF-serratus_M_contig1016 249141..249269 -
1622928817.3179584-UTR-F-serratus_M_contig1016:249902..2499791622928817.3179584-UTR-F-serratus_M_contig1016:249902..249979Fucus serratus maleUTRF-serratus_M_contig1016 249903..249979 -
1690962585.8724673-UTR-F-serratus_M_contig1016:249902..2499791690962585.8724673-UTR-F-serratus_M_contig1016:249902..249979Fucus serratus maleUTRF-serratus_M_contig1016 249903..249979 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928817.306025-CDS-F-serratus_M_contig1016:249269..2499021622928817.306025-CDS-F-serratus_M_contig1016:249269..249902Fucus serratus maleCDSF-serratus_M_contig1016 249270..249902 -
1690962585.8636482-CDS-F-serratus_M_contig1016:249269..2499021690962585.8636482-CDS-F-serratus_M_contig1016:249269..249902Fucus serratus maleCDSF-serratus_M_contig1016 249270..249902 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1016.251.1

>prot_F-serratus_M_contig1016.251.1 ID=prot_F-serratus_M_contig1016.251.1|Name=mRNA_F-serratus_M_contig1016.251.1|organism=Fucus serratus male|type=polypeptide|length=211bp
MSEGASSSSPKRPVGAELAEAGVIDMDSFPVVEALPCFDKVKVGAPQTVN
MAHVLLPTGEALEEFASNIHMMRGVLQPFMDLAVGADAGEAERFGYRDAG
ARVAGSQRDSSLISRCASRCREMTRLVLLANHRALRTWGEEWVILPTLPG
AAHPPLPSAPEPVASTEGGDPVTDNRGSSRSEQAATALPGAQGTDAAHEE
LREVAREPLR*
back to top

mRNA from alignment at F-serratus_M_contig1016:246554..249979-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1016.251.1 ID=mRNA_F-serratus_M_contig1016.251.1|Name=mRNA_F-serratus_M_contig1016.251.1|organism=Fucus serratus male|type=mRNA|length=3426bp|location=Sequence derived from alignment at F-serratus_M_contig1016:246554..249979- (Fucus serratus male)
GAGATCGTACGACCCGAAGCCTCGCAACAAGGGTGAAATTATTTCGGGTT
GAGCAAGCAGCTGCCGTCGTCGCCGTCATGTCTGAGGGCGCCTCCTCCAG
CAGCCCCAAGAGGCCAGTGGGGGCAGAACTCGCCGAGGCGGGAGTGATTG
ACATGGATTCGTTCCCTGTAGTCGAAGCTTTACCCTGTTTCGACAAGGTC
AAAGTTGGCGCCCCCCAGACCGTAAACATGGCGCACGTATTGCTGCCCAC
AGGGGAAGCGCTGGAGGAATTCGCCTCTAACATCCACATGATGAGAGGGG
TACTGCAGCCCTTCATGGACCTCGCGGTGGGGGCGGATGCAGGAGAAGCG
GAACGATTTGGGTATCGTGACGCTGGTGCTCGCGTAGCAGGGTCCCAACG
AGATTCTTCACTCATCAGTCGTTGTGCGTCGCGCTGCCGGGAAATGACAA
GGCTTGTCCTACTCGCAAATCACCGGGCTCTGCGGACGTGGGGGGAGGAG
TGGGTAATTTTACCGACTCTCCCGGGCGCAGCTCATCCTCCCCTGCCCAG
CGCTCCCGAACCCGTCGCGTCAACGGAGGGAGGAGACCCAGTTACGGATA
ATAGGGGAAGCAGCCGCTCGGAGCAGGCAGCCACGGCCCTGCCGGGAGCG
CAGGGGACAGATGCAGCTCACGAAGAGCTGAGAGAGGTTGCAAGGGAACC
TCTAAGGTGAGCAGGCTCGGAAGGGGGACAGCCGGACCCGAAGCGGTCGA
GGGTGGAAAGCACCGACCACCATGCAGCGGACTTGCGCACGCTGTTGGAC
GGGAGCAGAGTCACGGGTCGCACTCCGGTCCCTCGTGAGGTGAGCGTTAA
TCAAATCGTGCATTTATGCTGCACTTAGTACCACCCGCAAAGCGCTAGGT
GTGATATGTAAAGCCCCGAACCTCTCATAGAGCCGGTGATTTCGAGAACC
ATAGATGCGCACGGGTCAGACTCTTCGCTGACCAAATGAGAAATTCGAGT
TGAGAACAGAGTTACCAACCGCACGCAGAGGTGTCCGCGGGGGGGGGAGC
CCCAGTTCCAATACGGACAGACAGGCCGCTCGTGGTATCACCCTCGAAGG
ACGAGGTCTAGATATGTTGTTCGGCTAGTATAATCAAGCACAGTACTCTT
CGCCGAACAAATTAGAACTTCGAGGTGAGAACATAGTCATCAACCGCACG
CAGAGGTGGTCCGCGGGGGGGGGGATCCCCAATTCCAATACGGACAGACA
GGCCGCTCGTGGTATTACCCTCGAAGGACGAGGTATAGATACGTTATTCG
GCTAGTATAATCAAGCACCCTACAGGTGGGAGGTGTTCCCTCGCAAGCTG
CACGTCTCCGTATATTGGTTATAGTGGGTGATTATGAGAACCTATCGAAT
AGAGCTGGTGTTTTCGAGAACTTTTCGAACAGAGCTGGGGCATACGCTAT
TAATAGGTGTGAAGTACTTCGGACATTATAAGAATAGAGCGGGCAGGAGA
ACAGAGGGTAAGATAATTTTCACCTGGAAGCTCGAACTTGAACTTCAAGT
TACACAATGTGGGGTAAAGCGCAGGGTGAAGTCGGAACTTCATCTCTATC
GCATAATATTAATAATTCGTTCCAACGTCGTGCTATCTCGAAGCAGATTG
AACACTTCGCAAAACGTTTAATGGTCACCCGGAGAAGCCGACCTTGAACT
TCTAGGTTCCATCGTCGATCTATCTCGAAGCAGAATAAAACATTCCTCGA
ACGGGTGCCCGGCGTAGGCAAAGTAGGGTAGGGGCTGGCGGCAAGTGCCA
GGCCTAGCGTCCTTTCGAGGGCCAAGCACTGCGGTAAGAAGGGCGCAACG
GGGATTGAGAGCAGCTCGCACTGAACTCCGTGCAACATAATAATTACAAC
ACTATGCTGCGAGGTCATTTCGAATTACAGTACCAGCTGGTATATATGTA
TAGTTACACATATAGCAAGAGTATGGGCCAATCTGGTAAGGTTGCCATCC
TGCTCGTGGTCAGCGGGTAAGGGAACGTATGTTCCCCTGTCCGCGTCAGG
GCTTGAGAAATTTTCTCGCGAGACGGTTCGACAGTCCCGCCCCGCGGCAG
CCTGCTCATCTCCATAACTCAGGCTAAAATATGTACGGACATCACAGATA
GCAGAGCACGGATCAACCGTGTAAGATCGCCAATCCGGCTCGTGGTCAGC
TGAACGGGGAAACGAGTTTCCCCTGTCCCCGTGCGTGCATGAGAAGGTGG
TCTCATGTATAGGGTGTAGCAGTCCTGTCCCGCGTCAGCTGCATGAATTT
CGGGGAGTCCAAGGCCGCTCGGGGCCGTAGGCCGTGATATTACGCGTAGC
AGTAGCGACGTTGTAGGGCATCGACGAATGACACCCATGAGAGAAGTCTA
GCGTTCACGATCGTAGGATCGCACTCTCGTGCCGCTCGGGGCGTATACCG
ATTGGGGCTCGAGGGCGGTATCTCGGGCAAAGCCGCACGAGACAGACCGC
CGGTAGGATCGTGGCGGTGGGCCGCCCGGGGCGTATACCGAGGGGTGCTC
GAGCGCAGTATCGCGTTAAAGGCCGCACGAGGCCGTATATCGATAATCTA
CGCGCGGGATTGACGCGGTACGTCAGCTACACCCGTACCGAGTAGTCTAG
CCTGCTCGTGTGGAGTAGCTAGAGCGGGGCGTGCCGCTCGGGGCGTATAC
CGAGGAGTACGGCGTGCAATGCGAGTGCAGCATCCCGCTTTAGAGCCACC
CAGGGTGGCATACCGTTTGGTCCGGAGTACGTCATCGACGCCCGAGTCCG
GGCCTCGAGCGTGCACAAGTGTAGTAGCGCGATGCGTGCCGCTCGGGGCG
TATACCGAGGGGTATAATTTGCAAGACGAATGTAGTATCCCGCTCTAGAG
CCGCTCGGGTGGCGCACCGATCTGACCGCTAGATAGGAGCACTTAAGTTG
GAGGTATTGAGACAGCGTGCCCAGAGCGGAGGCGGCGGGCCGCGGAGCCG
CCCGTGCAAATATGCCGTCACAGGAAAGTCACTGACATGCCCGCCGTGTT
TCGTTTGCTGGTGCTTGTGCGCGTGGGATTTCGGTGTGGGGCGCAATGGT
GGGGCCGAGAACGCGCGGTACAGCTGTTACTACTTTGCGACCGGGCGCGG
GAGATCCTGGCAAACACTAATTCCCGCTTCAGGCAGTTCCGAGACGTGCT
GCTCGCCATGGAGGGTAAGGCGGACGCCAGGGGCTTGGGCAGAGGAGCAC
GCGCTCTTACGCACGATCCGGGCCAGAGGCGACCGTATTCTGCAAACAGC
AGGCTACAACCACTCACTCACGATGGCGGTTCTACGTAACCGCTTGCTGC
TGCCCGAAGTGGGGATCGCTCCCGAAATCGTGAAATGAGACGAGGATGCC
CTGCGGCTCGTAAAACCAACCGGGGC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1016:246554..249979-

>mRNA_F-serratus_M_contig1016.251.1 ID=mRNA_F-serratus_M_contig1016.251.1|Name=mRNA_F-serratus_M_contig1016.251.1|organism=Fucus serratus male|type=CDS|length=1266bp|location=Sequence derived from alignment at F-serratus_M_contig1016:246554..249979- (Fucus serratus male)
ATGTCTGAGGGCGCCTCCTCCAGCAGCCCCAAGAGGCCAGTGGGGGCAGA
ACTCGCCGAGGCGGGAGTGATTGACATGGATTCGTTCCCTGTAGTCGAAG
CTTTACCCTGTTTCGACAAGGTCAAAGTTGGCGCCCCCCAGACCGTAAAC
ATGGCGCACGTATTGCTGCCCACAGGGGAAGCGCTGGAGGAATTCGCCTC
TAACATCCACATGATGAGAGGGGTACTGCAGCCCTTCATGGACCTCGCGG
TGGGGGCGGATGCAGGAGAAGCGGAACGATTTGGGTATCGTGACGCTGGT
GCTCGCGTAGCAGGGTCCCAACGAGATTCTTCACTCATCAGTCGTTGTGC
GTCGCGCTGCCGGGAAATGACAAGGCTTGTCCTACTCGCAAATCACCGGG
CTCTGCGGACGTGGGGGGAGGAGTGGGTAATTTTACCGACTCTCCCGGGC
GCAGCTCATCCTCCCCTGCCCAGCGCTCCCGAACCCGTCGCGTCAACGGA
GGGAGGAGACCCAGTTACGGATAATAGGGGAAGCAGCCGCTCGGAGCAGG
CAGCCACGGCCCTGCCGGGAGCGCAGGGGACAGATGCAGCTCACGAAGAG
CTGAGAGAGGTTGCAAGGGAACCTCTAAGGTGAATGTCTGAGGGCGCCTC
CTCCAGCAGCCCCAAGAGGCCAGTGGGGGCAGAACTCGCCGAGGCGGGAG
TGATTGACATGGATTCGTTCCCTGTAGTCGAAGCTTTACCCTGTTTCGAC
AAGGTCAAAGTTGGCGCCCCCCAGACCGTAAACATGGCGCACGTATTGCT
GCCCACAGGGGAAGCGCTGGAGGAATTCGCCTCTAACATCCACATGATGA
GAGGGGTACTGCAGCCCTTCATGGACCTCGCGGTGGGGGCGGATGCAGGA
GAAGCGGAACGATTTGGGTATCGTGACGCTGGTGCTCGCGTAGCAGGGTC
CCAACGAGATTCTTCACTCATCAGTCGTTGTGCGTCGCGCTGCCGGGAAA
TGACAAGGCTTGTCCTACTCGCAAATCACCGGGCTCTGCGGACGTGGGGG
GAGGAGTGGGTAATTTTACCGACTCTCCCGGGCGCAGCTCATCCTCCCCT
GCCCAGCGCTCCCGAACCCGTCGCGTCAACGGAGGGAGGAGACCCAGTTA
CGGATAATAGGGGAAGCAGCCGCTCGGAGCAGGCAGCCACGGCCCTGCCG
GGAGCGCAGGGGACAGATGCAGCTCACGAAGAGCTGAGAGAGGTTGCAAG
GGAACCTCTAAGGTGA
back to top