mRNA_F-serratus_M_contig1016.250.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1016.250.1
Unique NamemRNA_F-serratus_M_contig1016.250.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1016.250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1016contigF-serratus_M_contig1016:237901..238347 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size448
Cds size333
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928817.2306108-CDS-F-serratus_M_contig1016:237900..2382331622928817.2306108-CDS-F-serratus_M_contig1016:237900..238233Fucus serratus maleCDSF-serratus_M_contig1016 237901..238233 +
1690962585.8264213-CDS-F-serratus_M_contig1016:237900..2382331690962585.8264213-CDS-F-serratus_M_contig1016:237900..238233Fucus serratus maleCDSF-serratus_M_contig1016 237901..238233 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928817.245311-UTR-F-serratus_M_contig1016:238233..2383471622928817.245311-UTR-F-serratus_M_contig1016:238233..238347Fucus serratus maleUTRF-serratus_M_contig1016 238234..238347 +
1690962585.835613-UTR-F-serratus_M_contig1016:238233..2383471690962585.835613-UTR-F-serratus_M_contig1016:238233..238347Fucus serratus maleUTRF-serratus_M_contig1016 238234..238347 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1016.250.1prot_F-serratus_M_contig1016.250.1Fucus serratus malepolypeptideF-serratus_M_contig1016 237901..238233 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1016.250.1

>prot_F-serratus_M_contig1016.250.1 ID=prot_F-serratus_M_contig1016.250.1|Name=mRNA_F-serratus_M_contig1016.250.1|organism=Fucus serratus male|type=polypeptide|length=111bp
DSQPCTQPRIIYRTPYSQRFRFSLTAQSTSLRESFGWSNQRGPKTSQACY
SYPRCNLNLVRLFRFSLLLLLVGRILFFLRPRGHKPIATFTYRNNPSTRT
RIHLEVDEKQ*
back to top

mRNA from alignment at F-serratus_M_contig1016:237901..238347+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1016.250.1 ID=mRNA_F-serratus_M_contig1016.250.1|Name=mRNA_F-serratus_M_contig1016.250.1|organism=Fucus serratus male|type=mRNA|length=447bp|location=Sequence derived from alignment at F-serratus_M_contig1016:237901..238347+ (Fucus serratus male)
GACTCGCAACCATGCACCCAACCGCGTATCATCTACCGCACTCCGTACTC
TCAGAGGTTTCGGTTTTCTCTAACGGCACAGTCGACGTCGCTTAGGGAGT
CCTTCGGTTGGTCCAATCAACGCGGCCCGAAAACGTCTCAAGCTTGCTAT
AGTTACCCCAGGTGCAACCTCAACCTTGTCCGCCTCTTCCGCTTCTCTCT
TCTTCTGCTGTTGGTTGGACGCATTCTCTTCTTCCTTCGCCCACGCGGCC
ATAAACCTATAGCCACCTTCACGTACAGGAATAATCCAAGTACACGAACC
CGTATTCACCTGGAAGTAGACGAAAAGCAGTAGGAGATCACACAAAGAGG
TAAGAGGCACACGGAAAGAACTGAGTTCCTCGCTCCAACTTGTCAGAGCT
ACGACGCACAGATGCTCCTCATGCTCGGACTTAGCTATGGCCCCGCG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1016:237901..238347+

>mRNA_F-serratus_M_contig1016.250.1 ID=mRNA_F-serratus_M_contig1016.250.1|Name=mRNA_F-serratus_M_contig1016.250.1|organism=Fucus serratus male|type=CDS|length=666bp|location=Sequence derived from alignment at F-serratus_M_contig1016:237901..238347+ (Fucus serratus male)
GACTCGCAACCATGCACCCAACCGCGTATCATCTACCGCACTCCGTACTC
TCAGAGGTTTCGGTTTTCTCTAACGGCACAGTCGACGTCGCTTAGGGAGT
CCTTCGGTTGGTCCAATCAACGCGGCCCGAAAACGTCTCAAGCTTGCTAT
AGTTACCCCAGGTGCAACCTCAACCTTGTCCGCCTCTTCCGCTTCTCTCT
TCTTCTGCTGTTGGTTGGACGCATTCTCTTCTTCCTTCGCCCACGCGGCC
ATAAACCTATAGCCACCTTCACGTACAGGAATAATCCAAGTACACGAACC
CGTATTCACCTGGAAGTAGACGAAAAGCAGTAGGACTCGCAACCATGCAC
CCAACCGCGTATCATCTACCGCACTCCGTACTCTCAGAGGTTTCGGTTTT
CTCTAACGGCACAGTCGACGTCGCTTAGGGAGTCCTTCGGTTGGTCCAAT
CAACGCGGCCCGAAAACGTCTCAAGCTTGCTATAGTTACCCCAGGTGCAA
CCTCAACCTTGTCCGCCTCTTCCGCTTCTCTCTTCTTCTGCTGTTGGTTG
GACGCATTCTCTTCTTCCTTCGCCCACGCGGCCATAAACCTATAGCCACC
TTCACGTACAGGAATAATCCAAGTACACGAACCCGTATTCACCTGGAAGT
AGACGAAAAGCAGTAG
back to top