mRNA_F-serratus_M_contig1015.248.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1015.248.1
Unique NamemRNA_F-serratus_M_contig1015.248.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1015.248.1 vs. uniprot
Match: A0A836CD27_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD27_9STRA)

HSP 1 Score: 139 bits (351), Expect = 7.320e-35
Identity = 83/212 (39.15%), Postives = 110/212 (51.89%), Query Frame = 1 
Query:    1 GKSYLRADFRIECYTQTHKAYEIYAAMMIFVYPLGIPAAFGYFLARQRSRINPPIDQGSQRQRGEDHGN----------REKVEKRNNDPTVAP---------------TSFLWAAYYPNRYYYEVCECLRRLLLTGLLVFVSPGTGVQVAYSCLFAFLSLFGFEMLRPHADRLERMLYRTGCLVIFFNNFLALVIKANVADADSDGATAYS 561
            GKSYLRAD+ +EC T  H  Y +++ +MI VYP+GIPA +   L R R+           R RG D G           R   E++   P   P               T FLW  Y P  YY+EV EC RRLLLTG+LVF+ PGT  Q AY+C+FA+ S   +    PHA   +  +Y  G  ++F + F+AL I+A+ A  D+ GA A S
Sbjct:  827 GKSYLRADYAVECGTPQHYRYSLFSMLMIAVYPIGIPALYAVMLWRHRADFAAR----RARCRGGDGGGSSGLTAGLSVRYDSEQQQVAPAAEPRALRALAPAHLELSSTEFLWRPYRPEYYYWEVLECFRRLLLTGVLVFIRPGTPAQSAYACVFAYCSAVAYLRYAPHAGAADAAVYTGGASILFLSMFVALSIQADFAGTDTSGAAAVS 1034
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BLAST of mRNA_F-serratus_M_contig1015.248.1 vs. uniprot
Match: A0A836CBB8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBB8_9STRA)

HSP 1 Score: 137 bits (344), Expect = 3.770e-34
Identity = 77/170 (45.29%), Postives = 100/170 (58.82%), Query Frame = 1 
Query:    7 SYLRADFRIECYTQTHKAYEIYAAMMIFVYPLGIPAAFGYFLARQRSRINPPIDQGSQRQRGEDHGNREKVEKRNNDPTVAPTSFLWAAYYPNRYYYEVCECLRRLLLTGLLVFVSPGTGVQVAYSCLFAFLSLFGFEMLRPHADRLERMLYRTGCLVIFFNNFLALVIK 516
            +YLRAD+ I CYT  H+A+  YAA MI VYP+GIPA F   L R   R         QRQRGE       V+        A  +FLW  Y  N  YYE  EC+RRLLLTG+LVF++PGT  Q A +C+FAF +   ++ +RPH  R +  LY  G +VIF + F AL+++
Sbjct:  433 AYLRADYSIRCYTPAHRAHMAYAAAMILVYPIGIPALFACTLRRHMLR---------QRQRGEALS----VDPPPTTEAAASAAFLWRPYRTNAPYYECAECVRRLLLTGVLVFITPGTAGQSAAACVFAFATSVAYDHVRPHRARSDACLYVVGYIVIFASMFTALLMQ 589
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BLAST of mRNA_F-serratus_M_contig1015.248.1 vs. uniprot
Match: A0A835YVC3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVC3_9STRA)

HSP 1 Score: 137 bits (344), Expect = 6.030e-34
Identity = 74/186 (39.78%), Postives = 105/186 (56.45%), Query Frame = 1 
Query:    1 GKSYLRADFRIECYTQTHKAYEIYAAMMIFVYPLGIPAAFG-----YFLARQRSRINPPIDQGSQRQRGEDHGNREKVEKRNNDPTVAPTSFLWAAYYPNRYYYEVCECLRRLLLTGLLVFVSPGTGVQVAYSCLFAFLSLFGFEMLRPHADRLERMLYRTGCLVIFFNNFLALVIKANVADADSD 543
            G SYLR D+ IECYT  H AY I+A +M+  YP+GIPA +       F+AR+                  DHG   ++ K         + FLW  Y  N +Y+EV EC+RRL+LTGLLVF+ PGT  Q A +C+FA  +  G+E +RPH D  +  LYR G  ++F + FL+L+++ +  D  S+
Sbjct:  473 GSSYLRVDYSIECYTPEHTAYRIFAGVMLLFYPIGIPALYMGTLWLCFVARR------------------DHGQTSQLAK--------ASLFLWEPYQANVFYWEVVECVRRLMLTGLLVFIMPGTPGQSAVACVFAVFTGIGYESMRPHRDSYDMWLYRIGYSIVFVSYFLSLLMQVSYTDEASE 632
[Close]
BLAST of mRNA_F-serratus_M_contig1015.248.1 vs. uniprot
Match: A0A836CF41_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF41_9STRA)

HSP 1 Score: 137 bits (344), Expect = 6.450e-34
Identity = 74/186 (39.78%), Postives = 105/186 (56.45%), Query Frame = 1 
Query:    1 GKSYLRADFRIECYTQTHKAYEIYAAMMIFVYPLGIPAAFG-----YFLARQRSRINPPIDQGSQRQRGEDHGNREKVEKRNNDPTVAPTSFLWAAYYPNRYYYEVCECLRRLLLTGLLVFVSPGTGVQVAYSCLFAFLSLFGFEMLRPHADRLERMLYRTGCLVIFFNNFLALVIKANVADADSD 543
            G SYLR D+ IECYT  H AY I+A +M+  YP+GIPA +       F+AR+                  DHG   ++ K         + FLW  Y  N +Y+EV EC+RRL+LTGLLVF+ PGT  Q A +C+FA  +  G+E +RPH D  +  LYR G  ++F + FL+L+++ +  D  S+
Sbjct: 1060 GSSYLRVDYSIECYTPEHTAYRIFAGVMLLFYPIGIPALYMGTLWLCFVARR------------------DHGQTSQLAK--------ASLFLWEPYQANVFYWEVVECVRRLMLTGLLVFIMPGTPGQSAVACVFAVFTGIGYESMRPHRDSYDMWLYRIGYSIVFVSYFLSLLMQVSYTDEASE 1219
[Close]
BLAST of mRNA_F-serratus_M_contig1015.248.1 vs. uniprot
Match: A0A835YZ05_9STRA (UCH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ05_9STRA)

HSP 1 Score: 137 bits (344), Expect = 6.480e-34
Identity = 74/186 (39.78%), Postives = 105/186 (56.45%), Query Frame = 1 
Query:    1 GKSYLRADFRIECYTQTHKAYEIYAAMMIFVYPLGIPAAFG-----YFLARQRSRINPPIDQGSQRQRGEDHGNREKVEKRNNDPTVAPTSFLWAAYYPNRYYYEVCECLRRLLLTGLLVFVSPGTGVQVAYSCLFAFLSLFGFEMLRPHADRLERMLYRTGCLVIFFNNFLALVIKANVADADSD 543
            G SYLR D+ IECYT  H AY I+A +M+  YP+GIPA +       F+AR+                  DHG   ++ K         + FLW  Y  N +Y+EV EC+RRL+LTGLLVF+ PGT  Q A +C+FA  +  G+E +RPH D  +  LYR G  ++F + FL+L+++ +  D  S+
Sbjct:  721 GSSYLRVDYSIECYTPEHTAYRIFAGVMLLFYPIGIPALYMGTLWLCFVARR------------------DHGQTSQLAK--------ASLFLWEPYQANVFYWEVVECVRRLMLTGLLVFIMPGTPGQSAVACVFAVFTGIGYESMRPHRDSYDMWLYRIGYSIVFVSYFLSLLMQVSYTDEASE 880
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1015.248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CD27_9STRA7.320e-3539.15Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CBB8_9STRA3.770e-3445.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YVC3_9STRA6.030e-3439.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CF41_9STRA6.450e-3439.78Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835YZ05_9STRA6.480e-3439.78UCH domain-containing protein n=1 Tax=Tribonema mi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1015contigF-serratus_M_contig1015:143846..146399 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.9
Seed ortholog evalue3.8e-38
Seed eggNOG ortholog2880.D8LRF6
Hectar predicted targeting categoryother localisation
EggNOG OGs2D43J@1,2STRI@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size571
Cds size567
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1015.248.1prot_F-serratus_M_contig1015.248.1Fucus serratus malepolypeptideF-serratus_M_contig1015 143848..146399 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928817.0019836-CDS-F-serratus_M_contig1015:143847..1439461622928817.0019836-CDS-F-serratus_M_contig1015:143847..143946Fucus serratus maleCDSF-serratus_M_contig1015 143848..143946 -
1690962585.7175226-CDS-F-serratus_M_contig1015:143847..1439461690962585.7175226-CDS-F-serratus_M_contig1015:143847..143946Fucus serratus maleCDSF-serratus_M_contig1015 143848..143946 -
1622928817.0150561-CDS-F-serratus_M_contig1015:144400..1444641622928817.0150561-CDS-F-serratus_M_contig1015:144400..144464Fucus serratus maleCDSF-serratus_M_contig1015 144401..144464 -
1690962585.7306871-CDS-F-serratus_M_contig1015:144400..1444641690962585.7306871-CDS-F-serratus_M_contig1015:144400..144464Fucus serratus maleCDSF-serratus_M_contig1015 144401..144464 -
1622928817.0320637-CDS-F-serratus_M_contig1015:144773..1448771622928817.0320637-CDS-F-serratus_M_contig1015:144773..144877Fucus serratus maleCDSF-serratus_M_contig1015 144774..144877 -
1690962585.7405903-CDS-F-serratus_M_contig1015:144773..1448771690962585.7405903-CDS-F-serratus_M_contig1015:144773..144877Fucus serratus maleCDSF-serratus_M_contig1015 144774..144877 -
1622928817.0453074-CDS-F-serratus_M_contig1015:145415..1455081622928817.0453074-CDS-F-serratus_M_contig1015:145415..145508Fucus serratus maleCDSF-serratus_M_contig1015 145416..145508 -
1690962585.7556345-CDS-F-serratus_M_contig1015:145415..1455081690962585.7556345-CDS-F-serratus_M_contig1015:145415..145508Fucus serratus maleCDSF-serratus_M_contig1015 145416..145508 -
1622928817.0553982-CDS-F-serratus_M_contig1015:146023..1461361622928817.0553982-CDS-F-serratus_M_contig1015:146023..146136Fucus serratus maleCDSF-serratus_M_contig1015 146024..146136 -
1690962585.7647328-CDS-F-serratus_M_contig1015:146023..1461361690962585.7647328-CDS-F-serratus_M_contig1015:146023..146136Fucus serratus maleCDSF-serratus_M_contig1015 146024..146136 -
1622928817.0711417-CDS-F-serratus_M_contig1015:146305..1463991622928817.0711417-CDS-F-serratus_M_contig1015:146305..146399Fucus serratus maleCDSF-serratus_M_contig1015 146306..146399 -
1690962585.7747934-CDS-F-serratus_M_contig1015:146305..1463991690962585.7747934-CDS-F-serratus_M_contig1015:146305..146399Fucus serratus maleCDSF-serratus_M_contig1015 146306..146399 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1015.248.1

>prot_F-serratus_M_contig1015.248.1 ID=prot_F-serratus_M_contig1015.248.1|Name=mRNA_F-serratus_M_contig1015.248.1|organism=Fucus serratus male|type=polypeptide|length=189bp
GKSYLRADFRIECYTQTHKAYEIYAAMMIFVYPLGIPAAFGYFLARQRSR
INPPIDQGSQRQRGEDHGNREKVEKRNNDPTVAPTSFLWAAYYPNRYYYE
VCECLRRLLLTGLLVFVSPGTGVQVAYSCLFAFLSLFGFEMLRPHADRLE
RMLYRTGCLVIFFNNFLALVIKANVADADSDGATAYSVG
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mRNA from alignment at F-serratus_M_contig1015:143846..146399-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1015.248.1 ID=mRNA_F-serratus_M_contig1015.248.1|Name=mRNA_F-serratus_M_contig1015.248.1|organism=Fucus serratus male|type=mRNA|length=2554bp|location=Sequence derived from alignment at F-serratus_M_contig1015:143846..146399- (Fucus serratus male)
GGCAAGAGCTATCTGCGGGCGGACTTTCGTATTGAATGCTACACACAAAC
ACACAAGGCGTATGAGATTTACGCCGCGATGATGATTTTCGTCTGTGAGT
TCGAGTGATTCGTTCGACACAGTGCTTGTGGATCATATTACATTTCCAAC
TTTTCCGAGTTACAACTAAAAAACAGAAACACAAGAGACAGCGCGAACAG
CATCATAGTAAACCCGCGCCAAGCCCCCCCCTCTTGACTAAACGCCATTC
TATGTCTGTGCAGACCCTCTTGGAATTCCTGCGGCGTTCGGGTACTTTCT
GGCGAGGCAGAGATCGCGCATCAATCCCCCCATCGATCAGGGTTCCCAAC
GCCAAAGGGGTGAAGATCATGGTAACGTGAGAGACACTCATATCATTATG
GATGTTGTGCGGGGGCTTGATTGAGTCGAGCGAGGGGGGGTTGGTTTGCC
GTCATCGATTCGGTCGATGTAGGCAGCTGACGTTATGGTTGGACGCCGTA
ATATACGATCGTATCGTCTGAGGTGATTGCAATGTTGATCGTGTCCAGGG
ATTGTTTTGTGTTATGGCGCAGTGGGGATGATGCCGGCCTAGAGTGTTCG
ATAGCGCGCTCCGATGGTAAACACTCATGTTCGGTTCCCGGTACTTCGGG
TGACTTACTCGACTGCCCGCTCTCGCCAAACGTTGCCGAAACAGTAACAC
CTCGTACGTAGATGAATTTAAGTCCGCGCAAGTTGTTGATGCTACTGCTG
CTTGTCTCGCATTAGCTGATCCGCTACGAAATCTAGTCGTCGTCGCAAGA
TAGACGGAACCATGAGATGCGTTTATTCTCGAAACAATACTCGTTTGCTA
AACCATTAATGTCAACCTTGTTTTATATTCTACTGGATCAGCGGGAAAAG
GTTGAGAAGCGCAACAATGACCCTACAGTGGCCCCGACGTCCTTTCTGTG
GGCTGCTTACTATCCTAACCGGTACTACTACGAGGTGAGGTATAGGCCAC
TACAGTTGTTACTGTCAAGGGGCAACCTTACGCTGTTAAGGGACTAACAC
TCGTTTTAAGAACACAATTACATGTTGCTACCTCGTACATGGTGCGTGAG
AGGTAGGTTTGATGTGTAGCCTCGATTTTTCAAGTTGATCATGGAGCGGG
TCAACACGAAGATGCAGAAGGCATCCTTTCGTCACACAACGACGGCGTTT
TTTCATACTTGCGATAGTTTTTCCTCTGATTTTGTCGCTTTCGGCGTTAA
CCGGCGTCCCCCTGAAGTTAAGACTCGAGGTAATAAAGTAAAACTAGTGT
TGTTAGTGTTTAGCATGTGATACCGAAACTCCCTCTCTTCTCTGTCTATG
TGTCAATGAATGCTCCTTGACAATCTGATGAATGCAGCCATCATAAACAG
TCGCAATTTGACTACCCTGCCACACGTAGTAACTTTCGGCGGACCGAAAA
AATCAACGTGGGGATCTGGTAGCGGCTTAGCAGGGAAATCAATCCAAGAA
TGCCTCGGCCGTGCCATTACAGGTTTGCGAGTGCTTAAGACGCTTGCTGC
TGACGGGATTGCTGGTATTCGTATCGCCCGGTACGGGGGTGCAGGTGGCC
TACAGCTGTTTGTTTGCCTTCCTCAGGTACGCCCTTAAATCCCATGGTCG
TCGTTTCATGGCTTGTTTGCGTTTATGGACGAAACGTCACCGCCGAGTAT
AGATAACGTATTTTGGGCCAGTCGACTGTGCACCAAGAATGCTTGTGAAT
GTAAAAACAATATCTAACTAGAGGCGGGTGACTCTACACGAAGCGTATGC
GCGTTAGGGCAGCAATAAGATAAAGTTGCGATTGCATAAAACATATTTTT
ATTGCGATCCCATTTTTGATTCGGCCTCGTACTCACTCACATGCCCATGT
TGACGCTTCTCCGAACAACCCTCACGGTCCCATAGCCTCTTCGGGTTCGA
GATGCTTCGGCCTCATGCTGATCGCCTGGAAAGGATGCTTTATCGCACAG
TAAGCTAATTTTGGTAGTCGGTGGATCTCAAGACGGCCCGTGCGCGTCGC
GATAAAAACATAATAAACGAAGACCTGTTTGTCGTTATTACAAACACTCT
TCTTGGGTATTCATGAAGTTCGGTCAAAAGCTCGATGTTTGTTTATTGGT
CAAAACTAATCGCATGGAATCTGCTGTGTACTAAGGCCACCTTCGTATAG
GCTCTCTAGTAACGTGAGCCACGATTTCTCGCTGTTACGTGTACTTCGCG
TCTGCTCCTCACACCCCTTTCGCCGCTCAAAACAAGTCGCACGGTAAGCC
TCCTCGCATGTACTAATGATCCCGAGTAGATAAACAGTTACTCCCCGGCA
TTGTTCATTTGGCATGTCTTACCCCTCATAATACGCCAATGCTTCCGTGA
ATCCTTGCTTTCTCGATCAAAACGGGACCGGTCGGTCGTGGTGTCAAAAA
CAGGGCTGTCTGGTAATTTTTTTCAACAACTTCTTGGCCCTCGTGATCAA
GGCCAATGTGGCTGACGCCGACTCGGATGGGGCCACGGCGTACTCCGTAG
GGCT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1015:143846..146399-

>mRNA_F-serratus_M_contig1015.248.1 ID=mRNA_F-serratus_M_contig1015.248.1|Name=mRNA_F-serratus_M_contig1015.248.1|organism=Fucus serratus male|type=CDS|length=1134bp|location=Sequence derived from alignment at F-serratus_M_contig1015:143846..146399- (Fucus serratus male)
GGCAAGAGCTATCTGCGGGCGGACTTTCGTATTGAATGCTACACACAAAC
ACACAAGGCGTATGAGATTTACGCCGCGATGATGATTTTCGTCTGGCAAG
AGCTATCTGCGGGCGGACTTTCGTATTGAATGCTACACACAAACACACAA
GGCGTATGAGATTTACGCCGCGATGATGATTTTCGTCTACCCTCTTGGAA
TTCCTGCGGCGTTCGGGTACTTTCTGGCGAGGCAGAGATCGCGCATCAAT
CCCCCCATCGATCAGGGTTCCCAACGCCAAAGGGGTGAAGATCATGGTAA
CACCCTCTTGGAATTCCTGCGGCGTTCGGGTACTTTCTGGCGAGGCAGAG
ATCGCGCATCAATCCCCCCATCGATCAGGGTTCCCAACGCCAAAGGGGTG
AAGATCATGGTAACCGGGAAAAGGTTGAGAAGCGCAACAATGACCCTACA
GTGGCCCCGACGTCCTTTCTGTGGGCTGCTTACTATCCTAACCGGTACTA
CTACGAGCGGGAAAAGGTTGAGAAGCGCAACAATGACCCTACAGTGGCCC
CGACGTCCTTTCTGTGGGCTGCTTACTATCCTAACCGGTACTACTACGAG
GTTTGCGAGTGCTTAAGACGCTTGCTGCTGACGGGATTGCTGGTATTCGT
ATCGCCCGGTACGGGGGTGCAGGTGGCCTACAGCTGTTTGTTTGCCTTCC
TCAGGTTTGCGAGTGCTTAAGACGCTTGCTGCTGACGGGATTGCTGGTAT
TCGTATCGCCCGGTACGGGGGTGCAGGTGGCCTACAGCTGTTTGTTTGCC
TTCCTCAGCCTCTTCGGGTTCGAGATGCTTCGGCCTCATGCTGATCGCCT
GGAAAGGATGCTTTATCGCACACCTCTTCGGGTTCGAGATGCTTCGGCCT
CATGCTGATCGCCTGGAAAGGATGCTTTATCGCACAGGCTGTCTGGTAAT
TTTTTTCAACAACTTCTTGGCCCTCGTGATCAAGGCCAATGTGGCTGACG
CCGACTCGGATGGGGCCACGGCGTACTCCGTAGGGGGCTGTCTGGTAATT
TTTTTCAACAACTTCTTGGCCCTCGTGATCAAGGCCAATGTGGCTGACGC
CGACTCGGATGGGGCCACGGCGTACTCCGTAGGG
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