mRNA_F-serratus_M_contig1015.248.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig1015.248.1 vs. uniprot
Match: D8LRF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF6_ECTSI) HSP 1 Score: 163 bits (412), Expect = 5.200e-44 Identity = 85/190 (44.74%), Postives = 119/190 (62.63%), Query Frame = 1 Query: 1 GKSYLRADFRIECYTQTHKAYEIYAAMMIFVYPLGIPAAFGYFLARQRSRINPPID--------QGSQRQRGED--HGNREKVEKRNNDPTVAPTSFLWAAYYPNRYYYEVCECLRRLLLTGLLVFVSPGTGVQVAYSCLFAFLSLFGFEMLRPHADRLERMLYRTGCLVIFFNNFLALVIKANVADADS 540 GKSYLRAD+ I+C + HKA+++YA +MI VYP+GIP AF L R+RS INPP D GS + ED +G + ++R +D +A T+FLW AY P YYYEV EC RRLLLTG LVF+ P + Q A +C+ A L++ F + P++D + Y G L IF F+ LV++ ++AD ++ Sbjct: 63 GKSYLRADYGIDCDSDRHKAFKLYAGLMILVYPIGIPVAFAVMLWRKRSMINPPKDILSAARVLHGSNPSQHEDERYGRPSEPDQRLSDRRIAQTAFLWRAYRPAAYYYEVLECFRRLLLTGCLVFILPNSAGQAAVACVLAVLTVAVFAFVSPYSDPDDHRAYTLGALAIFLTMFMGLVVRVDLADEET 252
BLAST of mRNA_F-serratus_M_contig1015.248.1 vs. uniprot
Match: D7FXY9_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY9_ECTSI) HSP 1 Score: 162 bits (411), Expect = 6.590e-43 Identity = 77/118 (65.25%), Postives = 93/118 (78.81%), Query Frame = 1 Query: 211 EKVEKRNNDPTVAPTSFLWAAYYPNRYYYEVCECLRRLLLTGLLVFVSPGTGVQVAYSCLFAFLSLFGFEMLRPHADRLERMLYRTGCLVIFFNNFLALVIKANVADADSDGATAYSV 564 +K+ R+ D ++APTSFLW AY+P YYYEV EC+RRLLLTG+LVF+ P T QVA+SC+FA LSL FE+LRPH + L+R LYRTGCLVI F NFLALVIK+ AD DS G+ AYSV Sbjct: 1253 QKMSVRDKDQSIAPTSFLWNAYFPKCYYYEVFECIRRLLLTGILVFLVPDTPGQVAFSCIFAILSLMVFELLRPHVNNLDRQLYRTGCLVILFTNFLALVIKSGAADKDSSGSAAYSV 1370
BLAST of mRNA_F-serratus_M_contig1015.248.1 vs. uniprot
Match: A0A6H5JU27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU27_9PHAE) HSP 1 Score: 161 bits (407), Expect = 1.080e-42 Identity = 86/197 (43.65%), Postives = 119/197 (60.41%), Query Frame = 1 Query: 4 KSYLRADFRIECYTQTHKAYEIYAAMMIFVYPLGIPAAFGYFLARQRSRINPPID--------QGSQRQRGED--HGNREKVEKRNNDPTVAPTSFLWAAYYPNRYYYEVCECLRRLLLTGLLVFVSPGTGVQVAYSCLFAFLSLFGFEMLRPHADRLERMLYRTGCLVIFFNNFLALVIKANVADADSDGATAYSV 564 KSYLRAD+ I+C + HKA+++YA MI VYP+GIP AF L R+RS INPP D GS + ED +G + ++R +D +A T+FLW AY P YYYEV EC RRLLLTG LVF+ P + Q A +C+ A L++ F + P++D + Y G L IF F+ LV++ ++AD ++ SV Sbjct: 214 KSYLRADYAIDCDSDRHKAFKLYAGFMILVYPIGIPVAFAVMLWRKRSMINPPKDILSAARVLHGSNPSQHEDERYGRPSEPDQRLSDRRIAQTAFLWRAYRPAAYYYEVLECFRRLLLTGCLVFILPNSAGQAAVACVLAVLTVAVFAFVSPYSDPDDHRAYTLGALAIFLTMFMGLVVREDLADEETQSQLVLSV 410
BLAST of mRNA_F-serratus_M_contig1015.248.1 vs. uniprot
Match: D7FRH3_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH3_ECTSI) HSP 1 Score: 154 bits (390), Expect = 4.370e-40 Identity = 83/187 (44.39%), Postives = 117/187 (62.57%), Query Frame = 1 Query: 1 GKSYLRADFRIECYTQTHKAYEIYAAMMIFVYPLGIPAAFGYFL-----ARQRSRINPPIDQGSQRQRGEDHGNREKVEKRNNDPTVAPTSFLWAAYYPNRYYYEVCECLRRLLLTGLLVFVSPGTGVQVAYSCLFAFLSLFGFEMLRPHADRLERMLYRTGCLVIFFNNFLALVIKANVA-DADSD 543 G+SYL AD+ I+C+T H Y++YA +MI L PA + R+ ++ P + EK+EKR +P + P+ FLW + P+ YYYEV EC RR+LLTG+L+F+SP T QVA +C+FAF+SL GFE+LRPH D ++ LYR GC+ IF +NFLAL+IK + A D++ D Sbjct: 1250 GESYLGADYGIQCHTDKHTWYKVYAGIMIL--SLNPPAEASTLVDSSADERKTNKAYKPKFMSEDLE--------EKLEKRRRNPDLVPSMFLWKDFGPDMYYYEVVECGRRILLTGVLIFISPNTAAQVAAACMFAFVSLLGFELLRPHLDPVDSWLYRLGCMCIFLSNFLALLIKVDSAGDSNRD 1426
BLAST of mRNA_F-serratus_M_contig1015.248.1 vs. uniprot
Match: D8LRF9_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF9_ECTSI) HSP 1 Score: 146 bits (368), Expect = 4.010e-37 Identity = 81/189 (42.86%), Postives = 107/189 (56.61%), Query Frame = 1 Query: 1 GKSYLRADFRIECYTQTHKAYEIYAAMMIFVYPLGIPAAFGYFLARQRSRINPPIDQGSQRQRGEDHGNREKV--EKRNNDPTVAPTSFLWAAYYPNRYYYEVCECLRRLLLTGLLVFVSPGTGVQVAYSCLFAFLSLFGFEMLRPHADRLERMLYRTGCLVIFFNNFLALVIKANVADADSDGATAYS 561 G ++LRAD+ +ECYT HK Y YA +MI VYP+GIP + + L R R RI P R+ V E+R D +A T LW AY P+RYYYEV EC RRLLLTG LVF+ P + Q +C+ + ++ F LRP AD + LY G ++IF + F++LV K +AD D T S Sbjct: 1396 GTTFLRADYSLECYTPEHKLYRGYAGIMILVYPIGIPLLYAWLLFRHRHRIYPK------------QALRDGVSPERRLVDKKIAHTVLLWQAYRPSRYYYEVIECARRLLLTGCLVFILPNSAGQAGVACVLSVATVALFITLRPFADSNDDRLYILGAILIFLSMFVSLVPKIEIADGDDQSETVVS 1572
BLAST of mRNA_F-serratus_M_contig1015.248.1 vs. uniprot
Match: A0A6H5KHA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHA3_9PHAE) HSP 1 Score: 140 bits (352), Expect = 3.660e-36 Identity = 72/184 (39.13%), Postives = 103/184 (55.98%), Query Frame = 1 Query: 10 YLRADFRIECYTQTHKAYEIYAAMMIFVYPLGIPAAFGYFLARQRSRINPPIDQGSQRQRGEDHGNREKVEKRNNDPTVAPTSFLWAAYYPNRYYYEVCECLRRLLLTGLLVFVSPGTGVQVAYSCLFAFLSLFGFEMLRPHADRLERMLYRTGCLVIFFNNFLALVIKANVADADSDGATAYS 561 YLRAD+ + C T TH E+YA +M+ VYP+GIPA F ++LA R + G+ + P LW Y P RY+YE+ EC RR++LTGL VF+ PGT QVA FA L FE+L P D ++ LYR+G LV+FF+ +LAL++K + +D +S+ ++ Sbjct: 174 YLRADYSLTCSTSTHTIMEVYAGLMVLVYPIGIPAVFAWWLASNRKDLVQDRSGGT-----------------TTPENLRPMKDLWEPYKPRRYFYELVECGRRIVLTGLAVFLFPGTAAQVAIEVAFAAGLLVVFEVLAPFVDPMDAWLYRSGALVVFFSMYLALLLKVDASDENSESQQVFA 340
BLAST of mRNA_F-serratus_M_contig1015.248.1 vs. uniprot
Match: A0A835ZLE8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLE8_9STRA) HSP 1 Score: 142 bits (357), Expect = 1.130e-35 Identity = 77/181 (42.54%), Postives = 109/181 (60.22%), Query Frame = 1 Query: 1 GKSYLRADFRIECYTQTHKAYEIYAAMMIFVYPLGIPAAFGYFLARQRSRINPPIDQGSQRQRGEDHGNREKVEKRNNDPTVAPTSFLWAAYYPNRYYYEVCECLRRLLLTGLLVFVSPGTGVQVAYSCLFAFLSLFGFEMLRPHADRLERMLYRTGCLVIFFNNFLALVIKANVADADSD 543 KSYLRAD+ IECYT H AY I+A +M+ +YP+GIPA + L R G+ R DHG ++ K +SFLW Y + +++EV ECLRRL+LTGLLVF+ PGT Q A +C+FAF + F +E +RPH +R + LY+ G +IF FL+L+++ + D S+ Sbjct: 820 SKSYLRADYSIECYTPEHTAYRIFAGVMVLIYPIGIPALYMSTLWRCF---------GAHR----DHGRTSELAK--------ASSFLWEPYRAHAFHWEVVECLRRLMLTGLLVFIMPGTPGQSAVACVFAFFTGFVYESVRPHGERSDMWLYKLGYSIIFVTYFLSLLMQVSYTDEQSE 979
BLAST of mRNA_F-serratus_M_contig1015.248.1 vs. uniprot
Match: A0A6H5JU65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU65_9PHAE) HSP 1 Score: 142 bits (357), Expect = 1.210e-35 Identity = 78/179 (43.58%), Postives = 105/179 (58.66%), Query Frame = 1 Query: 1 GKSYLRADFRIECYTQTHKAYEIYAAMMIFVYPLGIPAAFGYFLARQRSRINPPIDQGSQRQRGEDHGNREKV--EKRNNDPTVAPTSFLWAAYYPNRYYYEVCECLRRLLLTGLLVFVSPGTGVQVAYSCLFAFLSLFGFEMLRPHADRLERMLYRTGCLVIFFNNFLALVIKANVAD 531 GK++LRAD+ +ECYT HK Y YA +MI VYP+GIP + + L + R RI P R+ V E+R D +A T LW AY P+RYYYEV EC RRLLLTG LVF+ P + Q +C+ + ++ F LRP AD + LY G ++IF + F++LV K +AD Sbjct: 1691 GKTFLRADYSLECYTPEHKLYRGYAGIMILVYPIGIPLLYAWLLFQHRHRIYPK------------QALRDGVSPERRLVDKKIAHTVLLWQAYRPSRYYYEVIECARRLLLTGCLVFILPNSAGQAGVACVLSVATVALFITLRPFADSNDDHLYILGAILIFLSMFVSLVPKLEIAD 1857
BLAST of mRNA_F-serratus_M_contig1015.248.1 vs. uniprot
Match: D7FPF7_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF7_ECTSI) HSP 1 Score: 137 bits (346), Expect = 2.590e-35 Identity = 76/180 (42.22%), Postives = 100/180 (55.56%), Query Frame = 1 Query: 1 GKSYLRADFRIECYTQTHKAYEIYAAMMIFVYPLGIPAAFGYFLARQRSRINPPIDQGSQRQRGEDHGNREKVEKRNNDPTVAPTSFLWAAYYPNRYYYEVCECLRRLLLTGLLVFVSPGTGVQVAYSCLFAFLSLFGFEMLRPHADRLERMLYRTGCLVIFFNNFLALVIKANVADADS 540 G YLRAD+ + C T TH A ++YA +MIFVYP GIPA F +L R + G + GN + P LWA Y P RYY+EV EC RR+ LTGL VF+ PG+ QVA +FA + ++L P AD L+ LYR+G VIF + FL L++K + +D DS Sbjct: 191 GVEYLRADYSLVCSTDTHTAMKVYAGLMIFVYPFGIPAFFTLWLVSNRHDLVKVDANGGSTATAKSLGN------------LQPMRDLWAPYKPRRYYFEVVECGRRIALTGLAVFIYPGSAAQVALEVVFAAFFIGISDVLSPFADPLDAWLYRSGAWVIFISMFLTLLLKVDASDEDS 358
BLAST of mRNA_F-serratus_M_contig1015.248.1 vs. uniprot
Match: D7FUB5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUB5_ECTSI) HSP 1 Score: 136 bits (342), Expect = 6.420e-35 Identity = 72/184 (39.13%), Postives = 102/184 (55.43%), Query Frame = 1 Query: 10 YLRADFRIECYTQTHKAYEIYAAMMIFVYPLGIPAAFGYFLARQRSRINPPIDQGSQRQRGEDHGNREKVEKRNNDPTVAPTSFLWAAYYPNRYYYEVCECLRRLLLTGLLVFVSPGTGVQVAYSCLFAFLSLFGFEMLRPHADRLERMLYRTGCLVIFFNNFLALVIKANVADADSDGATAYS 561 YLRAD+ + C T TH E+YA +M+ VYP+GIPA F ++LA R + RE+ + P LW Y P RY+YE+ EC RR+ LTGL VF+ PGT QVA FA L FE+L P D ++ LYR+G LV+F++ +LAL++K + +D S+ ++ Sbjct: 152 YLRADYSLTCSTSTHTIMEVYAGLMVLVYPIGIPAVFAWWLASNRKDLV-----------------RERSSGTATPENLRPMKDLWEPYKPRRYFYELVECGRRIGLTGLAVFLFPGTAAQVAIEVAFAAGLLVVFEVLAPFVDPVDAGLYRSGALVVFYSMYLALLLKVDASDESSESQQVFA 318 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1015.248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1015.248.1 >prot_F-serratus_M_contig1015.248.1 ID=prot_F-serratus_M_contig1015.248.1|Name=mRNA_F-serratus_M_contig1015.248.1|organism=Fucus serratus male|type=polypeptide|length=189bp GKSYLRADFRIECYTQTHKAYEIYAAMMIFVYPLGIPAAFGYFLARQRSRback to top mRNA from alignment at F-serratus_M_contig1015:143846..146399- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1015.248.1 ID=mRNA_F-serratus_M_contig1015.248.1|Name=mRNA_F-serratus_M_contig1015.248.1|organism=Fucus serratus male|type=mRNA|length=2554bp|location=Sequence derived from alignment at F-serratus_M_contig1015:143846..146399- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1015:143846..146399- >mRNA_F-serratus_M_contig1015.248.1 ID=mRNA_F-serratus_M_contig1015.248.1|Name=mRNA_F-serratus_M_contig1015.248.1|organism=Fucus serratus male|type=CDS|length=1134bp|location=Sequence derived from alignment at F-serratus_M_contig1015:143846..146399- (Fucus serratus male)back to top |