mRNA_F-serratus_M_contig1015.247.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1015.247.1
Unique NamemRNA_F-serratus_M_contig1015.247.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1015.247.1 vs. uniprot
Match: D7G0A7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A7_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 1.130e-7
Identity = 37/92 (40.22%), Postives = 56/92 (60.87%), Query Frame = 2 
Query:    2 NICFFLSIWGNTLATIKATFSRRHVQGVIIGVDIVGEDKMDNLM----SRITEKETNALEKAGG------------EVKMEDVEAQPHCKQD 229
            N+ FFLSI+ NTLA  KA+FSRRHVQ +++GVDIV E ++D ++    +++ + +   L+ A G            + KMED+EA P  + D
Sbjct:   55 NVLFFLSIFWNTLAAAKASFSRRHVQDMVLGVDIVNEKQLDKIIGPKKTKVKKTKQQKLDDALGPDDGAGFAKAVEDGKMEDLEAAPAWEVD 146
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BLAST of mRNA_F-serratus_M_contig1015.247.1 vs. uniprot
Match: D7G0B0_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B0_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 1.210e-6
Identity = 38/92 (41.30%), Postives = 54/92 (58.70%), Query Frame = 2 
Query:    2 NICFFLSIWGNTLATIKATFSRRHVQGVIIGVDIVGEDKMDNLMS--RITEKETN--------------ALEKAGGEVKMEDVEAQPHCKQD 229
            N+ FFLSI+ NT A  KA+FSRRHVQ +++GVDIV E ++D ++       K+TN               ++KA  + KMED+EA P  + D
Sbjct: 1640 NVLFFLSIFWNTWAAAKASFSRRHVQDMMLGVDIVNEKQLDKIIGPKNTKVKKTNQQKLDDALGPDDGAGVDKAVEDGKMEDLEAAPAWEAD 1731
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BLAST of mRNA_F-serratus_M_contig1015.247.1 vs. uniprot
Match: A0A6H5K4A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4A5_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.620e-6
Identity = 32/71 (45.07%), Postives = 41/71 (57.75%), Query Frame = 2 
Query:    2 NICFFLSIWGNTLATIKATFSRRHVQGVIIGVDIVGEDKMDNLMSRITEKETNALEKAGGEVKMEDVEAQP 214
            NI FFLSIW N   T KA FSR H Q +++GVDIV E  ++ ++     K       AGG+ K ED E +P
Sbjct: 1651 NIMFFLSIWFNACTTAKAMFSRSHAQDMLLGVDIVDESTINQVLGPEKRKTKEPHGTAGGDAKTEDREERP 1721
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BLAST of mRNA_F-serratus_M_contig1015.247.1 vs. uniprot
Match: D7G0A6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A6_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 1.080e-5
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 2 
Query:    2 NICFFLSIWGNTLATIKATFSRRHVQGVIIGVDIVGEDKMDNLMS--RITEKETN--------------ALEKAGGEVKMEDVEAQPHCKQD 229
            N+ FFLSI+ +T A  KA+ SRRHVQ +++GVDIV E ++D ++       K+TN               ++KA  + KMED+EA P  + D
Sbjct:   90 NVLFFLSIFWDTWAAAKASSSRRHVQDMVLGVDIVNEKQLDKIIGPKNTNVKKTNQQKLDDALGPDDGAGVDKAVEDGKMEDLEAAPAWEAD 181
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BLAST of mRNA_F-serratus_M_contig1015.247.1 vs. uniprot
Match: D7FXY9_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY9_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 1.650e-5
Identity = 31/71 (43.66%), Postives = 40/71 (56.34%), Query Frame = 2 
Query:    2 NICFFLSIWGNTLATIKATFSRRHVQGVIIGVDIVGEDKMDNLMSRITEKETNALEKAGGEVKMEDVEAQP 214
            NI FFLSIW N   T KA FSR H Q +++GVDIV E  ++ ++     K       A G+ K ED E +P
Sbjct: 1376 NIMFFLSIWFNACTTAKAMFSRSHAQDMLLGVDIVDESTINQVLGPEKRKTKEPSGTACGDAKTEDGEERP 1446
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1015.247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G0A7_ECTSI1.130e-740.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0B0_ECTSI1.210e-641.30Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5K4A5_9PHAE1.620e-645.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0A6_ECTSI1.080e-539.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FXY9_ECTSI1.650e-543.66Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1015contigF-serratus_M_contig1015:142477..143836 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size815
Cds size432
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1015.247.1prot_F-serratus_M_contig1015.247.1Fucus serratus malepolypeptideF-serratus_M_contig1015 142742..143369 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928816.8245423-UTR-F-serratus_M_contig1015:142476..1427411622928816.8245423-UTR-F-serratus_M_contig1015:142476..142741Fucus serratus maleUTRF-serratus_M_contig1015 142477..142741 -
1690962585.648004-UTR-F-serratus_M_contig1015:142476..1427411690962585.648004-UTR-F-serratus_M_contig1015:142476..142741Fucus serratus maleUTRF-serratus_M_contig1015 142477..142741 -
1622928816.90619-UTR-F-serratus_M_contig1015:143369..1434081622928816.90619-UTR-F-serratus_M_contig1015:143369..143408Fucus serratus maleUTRF-serratus_M_contig1015 143370..143408 -
1690962585.6859498-UTR-F-serratus_M_contig1015:143369..1434081690962585.6859498-UTR-F-serratus_M_contig1015:143369..143408Fucus serratus maleUTRF-serratus_M_contig1015 143370..143408 -
1622928816.9181855-UTR-F-serratus_M_contig1015:143757..1438361622928816.9181855-UTR-F-serratus_M_contig1015:143757..143836Fucus serratus maleUTRF-serratus_M_contig1015 143758..143836 -
1690962585.6979744-UTR-F-serratus_M_contig1015:143757..1438361690962585.6979744-UTR-F-serratus_M_contig1015:143757..143836Fucus serratus maleUTRF-serratus_M_contig1015 143758..143836 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928816.840112-CDS-F-serratus_M_contig1015:142741..1430091622928816.840112-CDS-F-serratus_M_contig1015:142741..143009Fucus serratus maleCDSF-serratus_M_contig1015 142742..143009 -
1690962585.6623101-CDS-F-serratus_M_contig1015:142741..1430091690962585.6623101-CDS-F-serratus_M_contig1015:142741..143009Fucus serratus maleCDSF-serratus_M_contig1015 142742..143009 -
1622928816.8539217-CDS-F-serratus_M_contig1015:143205..1433691622928816.8539217-CDS-F-serratus_M_contig1015:143205..143369Fucus serratus maleCDSF-serratus_M_contig1015 143206..143369 -
1690962585.676575-CDS-F-serratus_M_contig1015:143205..1433691690962585.676575-CDS-F-serratus_M_contig1015:143205..143369Fucus serratus maleCDSF-serratus_M_contig1015 143206..143369 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1015.247.1

>prot_F-serratus_M_contig1015.247.1 ID=prot_F-serratus_M_contig1015.247.1|Name=mRNA_F-serratus_M_contig1015.247.1|organism=Fucus serratus male|type=polypeptide|length=144bp
MDNLMSRITEKETNALEKAGGEVKMEDVEAQPHCKQDESITGPTEINRGR
LLHRRCNVRSFCEDSDSAVVIAPPPVLTSKAHGGGQRSLYTSKSFGERNS
IQGHGSALKTWTPALISPTSAVPKADNFDDSGPRSRGFPYASL*
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mRNA from alignment at F-serratus_M_contig1015:142477..143836-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1015.247.1 ID=mRNA_F-serratus_M_contig1015.247.1|Name=mRNA_F-serratus_M_contig1015.247.1|organism=Fucus serratus male|type=mRNA|length=1360bp|location=Sequence derived from alignment at F-serratus_M_contig1015:142477..143836- (Fucus serratus male)
CAACATCTGCTTCTTTCTGTCCATCTGGGGGAACACGTTAGCTACAATCA
AGGCAACCTTCAGCCGAAGACACGTTCAAGTGTGACCCGCTGCTATGCTT
GAGTCTGACACGCCACCGCGTGCAAAATGCATGCTTTGGATTTCGTATCG
ACTGCTAGTAGTAAATGATGTTGATGCCACCTTAGAGATTTCACGTTAAT
ATGATGGTCTCAGAAGCGATACATACTTTTTTGTAGGTGTAAGGGTTCTA
CGTTGGAGTCTGACTAGATACTACATTCTTGTGTGCGGTTTCCCATGGTC
ATGCGCGGTGCATACAAATTTGCACAAAGATAAGGTACATGTTTCATCGA
CCCATCAGGCGAAGAATATAGCACGGAAGGATCTGAAAGTTCGCAACGTT
TCTTGGGACTTTCTTCATACAACAACAGGGCGTGATTATCGGGGTGGACA
TCGTGGGGGAGGACAAGATGGACAACCTCATGAGCCGCATAACTGAAAAA
GAGACAAACGCTCTGGAAAAGGCGGGAGGGGAGGTCAAGATGGAGGATGT
GGAAGCACAACCTCACTGTAAACAAGACGAATCAATTACAGGGCCAACTG
AAATCAACAGGGGAAGGTTGCTACATAGAAGGTTGCATTTCGTATTCATA
CCGTGGGTAGTAATGCACCATAAGCTCAACATCTGAACAGTCACAGTCAC
AAGCAGTGTGCGTGTGTGTTTAAGTTGGTGAGTATGTGTGCTTGTGCGTG
TTGTGTACCTTTTCGTGGGTGCTAAATCATTCAAAAACACGTCGTGCTTA
TACATCCGCGCTGTTACTATCGCGCAGGTGCAACGTTCGAAGCTTTTGCG
AAGACTCCGATTCAGCGGTTGTCATCGCCCCACCGCCTGTCTTGACGTCT
AAAGCCCATGGCGGCGGCCAAAGGAGCCTGTACACATCCAAATCGTTCGG
GGAGCGAAATTCAATCCAAGGCCACGGCTCTGCGTTGAAGACGTGGACTC
CTGCCCTTATCAGCCCGACCAGTGCAGTGCCCAAGGCAGACAACTTCGAT
GATAGCGGCCCGAGGAGTCGCGGCTTTCCCTATGCTTCCTTGTAACTGTA
CCTGGCGACTTTTCTTTTTACGCTGTGGACATTAAGTGTACTCCAAGCTG
CGCTTTATGTTATTTTTCAACAATATACAGTGTGAGAGCCTGGCGCCGTT
GCCGCAAGTGATGGCATTTGTGTATGATATTTGTGATATATTGACCTGTG
GTTGCCATAAGTTCCACGAGAGGAGCTTGATGAGGGCGTTGCGTGCTCTA
CATACTGTATTGGTCTATAGTAGGGCCAGAGATGGTTAAGATTTTCCGTC
AATAGTGCCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1015:142477..143836-

>mRNA_F-serratus_M_contig1015.247.1 ID=mRNA_F-serratus_M_contig1015.247.1|Name=mRNA_F-serratus_M_contig1015.247.1|organism=Fucus serratus male|type=CDS|length=864bp|location=Sequence derived from alignment at F-serratus_M_contig1015:142477..143836- (Fucus serratus male)
ATGGACAACCTCATGAGCCGCATAACTGAAAAAGAGACAAACGCTCTGGA
AAAGGCGGGAGGGGAGGTCAAGATGGAGGATGTGGAAGCACAACCTCACT
GTAAACAAGACGAATCAATTACAGGGCCAACTGAAATCAACAGGGGAAGG
TTGCTACATAGAAGATGGACAACCTCATGAGCCGCATAACTGAAAAAGAG
ACAAACGCTCTGGAAAAGGCGGGAGGGGAGGTCAAGATGGAGGATGTGGA
AGCACAACCTCACTGTAAACAAGACGAATCAATTACAGGGCCAACTGAAA
TCAACAGGGGAAGGTTGCTACATAGAAGGTGCAACGTTCGAAGCTTTTGC
GAAGACTCCGATTCAGCGGTTGTCATCGCCCCACCGCCTGTCTTGACGTC
TAAAGCCCATGGCGGCGGCCAAAGGAGCCTGTACACATCCAAATCGTTCG
GGGAGCGAAATTCAATCCAAGGCCACGGCTCTGCGTTGAAGACGTGGACT
CCTGCCCTTATCAGCCCGACCAGTGCAGTGCCCAAGGCAGACAACTTCGA
TGATAGCGGCCCGAGGAGTCGCGGCTTTCCCTATGCTTCCTTGTAAGTGC
AACGTTCGAAGCTTTTGCGAAGACTCCGATTCAGCGGTTGTCATCGCCCC
ACCGCCTGTCTTGACGTCTAAAGCCCATGGCGGCGGCCAAAGGAGCCTGT
ACACATCCAAATCGTTCGGGGAGCGAAATTCAATCCAAGGCCACGGCTCT
GCGTTGAAGACGTGGACTCCTGCCCTTATCAGCCCGACCAGTGCAGTGCC
CAAGGCAGACAACTTCGATGATAGCGGCCCGAGGAGTCGCGGCTTTCCCT
ATGCTTCCTTGTAA
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