mRNA_F-serratus_M_contig1014.244.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1014.244.1
Unique NamemRNA_F-serratus_M_contig1014.244.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1014.244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1014contigF-serratus_M_contig1014:250653..251319 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size424
Cds size249
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1014.244.1prot_F-serratus_M_contig1014.244.1Fucus serratus malepolypeptideF-serratus_M_contig1014 250761..251252 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928813.4495938-UTR-F-serratus_M_contig1014:250652..2507601622928813.4495938-UTR-F-serratus_M_contig1014:250652..250760Fucus serratus maleUTRF-serratus_M_contig1014 250653..250760 -
1690962583.7977018-UTR-F-serratus_M_contig1014:250652..2507601690962583.7977018-UTR-F-serratus_M_contig1014:250652..250760Fucus serratus maleUTRF-serratus_M_contig1014 250653..250760 -
1622928813.501378-UTR-F-serratus_M_contig1014:251252..2513191622928813.501378-UTR-F-serratus_M_contig1014:251252..251319Fucus serratus maleUTRF-serratus_M_contig1014 251253..251319 -
1690962583.8224418-UTR-F-serratus_M_contig1014:251252..2513191690962583.8224418-UTR-F-serratus_M_contig1014:251252..251319Fucus serratus maleUTRF-serratus_M_contig1014 251253..251319 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928813.4741096-CDS-F-serratus_M_contig1014:250760..2508221622928813.4741096-CDS-F-serratus_M_contig1014:250760..250822Fucus serratus maleCDSF-serratus_M_contig1014 250761..250822 -
1690962583.8083117-CDS-F-serratus_M_contig1014:250760..2508221690962583.8083117-CDS-F-serratus_M_contig1014:250760..250822Fucus serratus maleCDSF-serratus_M_contig1014 250761..250822 -
1622928813.487618-CDS-F-serratus_M_contig1014:251065..2512521622928813.487618-CDS-F-serratus_M_contig1014:251065..251252Fucus serratus maleCDSF-serratus_M_contig1014 251066..251252 -
1690962583.815212-CDS-F-serratus_M_contig1014:251065..2512521690962583.815212-CDS-F-serratus_M_contig1014:251065..251252Fucus serratus maleCDSF-serratus_M_contig1014 251066..251252 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1014.244.1

>prot_F-serratus_M_contig1014.244.1 ID=prot_F-serratus_M_contig1014.244.1|Name=mRNA_F-serratus_M_contig1014.244.1|organism=Fucus serratus male|type=polypeptide|length=83bp
MLGDGVANWLSSGKIRAPRNCVQEVGLRHDRGKPGVAFGSTVPHSGQART
ADKLRGTIGSHPGATQWTRPADQQERTVPKAG*
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mRNA from alignment at F-serratus_M_contig1014:250653..251319-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1014.244.1 ID=mRNA_F-serratus_M_contig1014.244.1|Name=mRNA_F-serratus_M_contig1014.244.1|organism=Fucus serratus male|type=mRNA|length=667bp|location=Sequence derived from alignment at F-serratus_M_contig1014:250653..251319- (Fucus serratus male)
TAAAAGTTTGAAGAATCACGCCGCCGGGGGTAGGAACAAGTTGCGTCAGA
AAGGGCAAGTGCTGGTGATGTTAGGAGACGGCGTGGCCAACTGGCTGTCG
TCGGGAAAGATTCGGGCGCCACGCAATTGCGTGCAAGAGGTTGGGCTGCG
GCATGATAGAGGCAAGCCAGGTGTCGCGTTCGGGAGCACGGTACCGCATT
CGGGACAGGCGCGTACGGCGGACAAATTGCGTGGGACGATAGGCTCCCAC
CCAGGTGAGGTGTTTCGCAGAGAAATCGACGTTTGATAAATGTCCGAAGC
AGCTTTTTGTAAATGAGCTTTGCCGTGGACGCCAAGACGTCCAGCTGGAA
TATTGTTGACCGTCGCGCCTTATGCCCCAACAGGAGCGCTGGCATGAGGT
GTTTGCCCCCCTTATGTATATGGTACTTCACTCTATGATTTTTGGACCAA
ATTTCTCTCGATGAGAGGCGTTTTCACAACTCTATGGTTGAAAGCAGGAG
CCACGCAATGGACGCGACCCGCGGATCAGCAAGAGCGAACCGTTCCCAAG
GCCGGATAGTCTCGGAGATCGAGACAATTCTGCCAGGAAGATTACCTCCA
CCAAAGTTCGAGAACCGTTTGCGAATCGCTGACCGCTTAGTTCTGAATGG
AGGAACCTAAAACGCAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1014:250653..251319-

>mRNA_F-serratus_M_contig1014.244.1 ID=mRNA_F-serratus_M_contig1014.244.1|Name=mRNA_F-serratus_M_contig1014.244.1|organism=Fucus serratus male|type=CDS|length=498bp|location=Sequence derived from alignment at F-serratus_M_contig1014:250653..251319- (Fucus serratus male)
ATGTTAGGAGACGGCGTGGCCAACTGGCTGTCGTCGGGAAAGATTCGGGC
GCCACGCAATTGCGTGCAAGAGGTTGGGCTGCGGCATGATAGAGGCAAGC
CAGGTGTCGCGTTCGGGAGCACGGTACCGCATTCGGGACAGGCGCGTACG
GCGGACAAATTGCGTGGGACGATAGGCTCCCACCCAGATGTTAGGAGACG
GCGTGGCCAACTGGCTGTCGTCGGGAAAGATTCGGGCGCCACGCAATTGC
GTGCAAGAGGTTGGGCTGCGGCATGATAGAGGCAAGCCAGGTGTCGCGTT
CGGGAGCACGGTACCGCATTCGGGACAGGCGCGTACGGCGGACAAATTGC
GTGGGACGATAGGCTCCCACCCAGGAGCCACGCAATGGACGCGACCCGCG
GATCAGCAAGAGCGAACCGTTCCCAAGGCCGGATAGGAGCCACGCAATGG
ACGCGACCCGCGGATCAGCAAGAGCGAACCGTTCCCAAGGCCGGATAG
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