mRNA_F-serratus_M_contig1013.223.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1013.223.1
Unique NamemRNA_F-serratus_M_contig1013.223.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1013.223.1 vs. uniprot
Match: A0A1V9YL26_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YL26_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 2.440e-10
Identity = 57/144 (39.58%), Postives = 75/144 (52.08%), Query Frame = 1 
Query:   73 RKPKVEVVFDPDARKDYLTGFHKRKVARRRFGLAMQEIKDRKERLXXXXXXXXXXXXXXXELGVQEDLDSFDIKARAREEAKAKADEQVRVDFEDGHTQTMFGDTVTVTTVEGIPDSDDEDAIEMERLERELLE-EKKRLRAER 501
            +K K+ V FD D RKDYLTGF KRK  RRRFG  M+  K +K  +                      L+S    A  ++ A+ K D++V + F+D HTQ  FG+ VTVTT+ G   SD ED +  E  E+ L    KK+ RA R
Sbjct:    9 KKSKLVVTFDADKRKDYLTGFSKRKQERRRFGHDMEAFKKQKALIEQRKIRKAEQKKL---------LESLPEVADVKQVAEDK-DKEV-MSFDDAHTQDKFGNVVTVTTMVGDLKSDSEDELSEEENEQLLAHLAKKKERASR 141
[Close]
BLAST of mRNA_F-serratus_M_contig1013.223.1 vs. uniprot
Match: A0A225X1U8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X1U8_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 4.380e-10
Identity = 59/140 (42.14%), Postives = 73/140 (52.14%), Query Frame = 1 
Query:   40 TMGRRISKDGGRKPKVEVVFDPDARKDYLTGFHKRKVARRRFGLAMQEIKDRKERLXXXXXXXXXXXXXXXELGVQED-----LDSFDIKARAREEAKAKADEQVR--VDFEDGHTQTMFGDTVTVTTVEGIPDSDDEDA 438
            T G   + +  +K K+ V FDPD RK+YLTGFHKRK  RRRFGL M+  K +K +L      XXXXXX    L + ED              + EE K    + V   + F D  TQ  FGD VTVTT  G   SD +D+
Sbjct:   27 TTGMGANPNLRKKSKLVVTFDPDKRKEYLTGFHKRKQERRRFGLDMEAYKVKKRQLEAKKQRXXXXXXKLAALNLLEDKXXXXXXXXXXXXASDEETKLLDGKSVTKVMTFTDDFTQGKFGDVVTVTTSVGDLQSDSDDS 166
[Close]
BLAST of mRNA_F-serratus_M_contig1013.223.1 vs. uniprot
Match: A0A485LKQ5_9STRA (Aste57867_22725 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LKQ5_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 4.610e-10
Identity = 50/130 (38.46%), Postives = 65/130 (50.00%), Query Frame = 1 
Query:   61 KDGGRKPKVEVVFDPDARKDYLTGFHKRKVARRRFGLAMQEIKDRKERLXXXXXXXXXXXXXXXELGVQEDLDSFDIKARAREEAKAKADEQVRVDFEDGHTQTMFGDTVTVTTVEGIPDSDDEDAIEME 450
            K   +K K+ V FD + RKDYLTGFHKRK  RRR+G  M+  K +K ++                L      +  +IK  A  + KA       V+F D HTQ  FGD VTVTT  G   SD E+ ++ E
Sbjct:    6 KSSNKKNKLVVTFDAEKRKDYLTGFHKRKQDRRRYGHDMEAFKKKKAQIEARKIRKAEQREMLAGLP-----EVANIKPAADPKGKAV------VEFNDEHTQGKFGDVVTVTTSVGELQSDSEEELDDE 124
[Close]
BLAST of mRNA_F-serratus_M_contig1013.223.1 vs. uniprot
Match: A0A7S2KJM5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KJM5_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 8.360e-10
Identity = 76/186 (40.86%), Postives = 99/186 (53.23%), Query Frame = 1 
Query:   37 HTMGRRISKDGGRKP-------KVEVVFDPDARKDYLTGFHKRKVARRRFGLAMQEIKDRKERLXXXXXXXXXXXXXXXELGVQEDLDSFDIK-------ARAREEAKAKADEQVRV----------DFEDGHTQTMFG----DTVTVTTVEGIPDSDDEDAIEMERLERELLEEKKRLRAERVAG 510
            H  GRR     G+KP       K+E+ FDP+ARK+YL GF KRK  +R FGLAMQ++KDRK RL  XXXXXXXXXXXXXEL + +     +         + A +  K ++DE +            D  D      FG      VTVTT  G+P++DD +  E E   R+  E K   +A+R AG
Sbjct:   22 HMPGRRNKSSKGKKPIAPVRKRKLEIKFDPEARKEYLLGFQKRKQEKRTFGLAMQKLKDRKNRLEEXXXXXXXXXXXXXELELLKKTQRGEXXXXXXXXXSLASDNEKEESDEVITYNRNDAAKAGDDANDERKANFFGVDEQSEVTVTTHFGMPENDDSEN-EYEEEMRKQSERKGVDKAQRWAG 206
[Close]
BLAST of mRNA_F-serratus_M_contig1013.223.1 vs. uniprot
Match: A0A2P4XC52_9STRA (Nucleolar protein 12 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XC52_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.060e-9
Identity = 59/132 (44.70%), Postives = 69/132 (52.27%), Query Frame = 1 
Query:   73 RKPKVEVVFDPDARKDYLTGFHKRKVARRRFGLAMQEIKDRKERLXXXXXXXXXXXXXXXELGVQEDLDSFDIKARAREEAKAKADEQVRV----------DFEDGHTQTMFGDTVTVTTVEGIPDSDDEDA 438
            +K K+ V FDPD RK+YLTGFHKRK  RRRFGL M+  K +K +L     XXXXXXXX   L +   LD           + A  DE   V           F D  TQ  FGD VTVTT  G   SD +D+
Sbjct:   38 KKSKLVVTFDPDKRKEYLTGFHKRKQERRRFGLDMEAYKVKKRQLEAKKQXXXXXXXXLAALNL---LDDXXXXXXXXXXSDASEDENKPVLGGKSVTKVMTFNDDFTQGKFGDVVTVTTSVGDLQSDSDDS 166
[Close]
BLAST of mRNA_F-serratus_M_contig1013.223.1 vs. uniprot
Match: A0A0W8DIR9_PHYNI (60S ribosomal protein L44 n=9 Tax=Phytophthora TaxID=4783 RepID=A0A0W8DIR9_PHYNI)

HSP 1 Score: 69.3 bits (168), Expect = 1.140e-9
Identity = 59/147 (40.14%), Postives = 75/147 (51.02%), Query Frame = 1 
Query:   40 TMGRRISKDGGRKPKVEVVFDPDARKDYLTGFHKRKVARRRFGLAMQEIKDRKERLXXXXXXXXXXXXXXXELGVQEDLDSFDIKARAREEAK--------------AKADEQVRVDFEDGHTQTMFGDTVTVTTVEGIPDSDDEDA 438
            T G   + +  +K K+ V FDPD RK+YLTGFHKRK  RRRFGL M+  K +K +L      XXXXX     L + +D D  D    +  E++              AKA  +V   F D  TQ  FGD VTV T  G   SD +D+
Sbjct:   27 TTGMGANPNKRKKSKLVVTFDPDKRKEYLTGFHKRKQERRRFGLDMEAYKVKKRQLEAKKQRXXXXXERLAALNLLDD-DKKDXXXXSEAESESDGSDNETKLVLGGAKAVTKVET-FNDDFTQGKFGDVVTVMTSVGDLQSDSDDS 171
[Close]
BLAST of mRNA_F-serratus_M_contig1013.223.1 vs. uniprot
Match: K3WTL5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WTL5_GLOUD)

HSP 1 Score: 68.6 bits (166), Expect = 1.560e-9
Identity = 52/136 (38.24%), Postives = 63/136 (46.32%), Query Frame = 1 
Query:   55 ISKDGGRKP------KVEVVFDPDARKDYLTGFHKRKVARRRFGLAMQEIKDRKERLXXXXXXXXXXXXXXXELGVQEDLDSFDIKARAREEAKAKADEQVRV-DFEDGHTQTMFGDTVTVTTVEGIPDSDDEDAI 441
            I   G RKP      K+ V FDP+ RK+YLTGFHKRK  RRRFGL M+  K +K++                 L + E                  +    +V  F+D HTQ  FGD VTVTT  G   SD ED I
Sbjct:   31 IGSGGTRKPNPKKKSKLVVTFDPEKRKEYLTGFHKRKQERRRFGLDMEAFKQQKQQ-----------KEKLASLNLLEPXXXXXXXXXXXXXXXXXSKAVTKVMHFDDEHTQNKFGDVVTVTTSIGDLQSDSEDEI 155
[Close]
BLAST of mRNA_F-serratus_M_contig1013.223.1 vs. uniprot
Match: A0A6G0X6U2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X6U2_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 5.130e-9
Identity = 50/133 (37.59%), Postives = 65/133 (48.87%), Query Frame = 1 
Query:   73 RKPKVEVVFDPDARKDYLTGFHKRKVARRRFGLAMQEIKDRKERLXXXXXXXXXXXXXXXELGVQEDLDSFDIKARAREEAKAKADEQVRVDFEDGHTQTMFGDTVTVTTVEGIPDSDDEDAIEMERLERELL 471
            +K K+ V FD D RK+YLTGFHKRK  RRRFG  M+  K +K ++                L    D+             K     +  V+F+D HT+  FG+ VTVTT  G   SD ED ++ E  E ELL
Sbjct:   11 KKSKLVVTFDADKRKEYLTGFHKRKQERRRFGHDMEAYKKKKAQIEARKIRKAEQKELLASLPEVADV-------------KPVTTGKDVVNFDDKHTKEKFGNVVTVTTSLGELQSDSEDELDDE--ENELL 128
[Close]
BLAST of mRNA_F-serratus_M_contig1013.223.1 vs. uniprot
Match: A0A0P1AFX9_PLAHL (Uncharacterized conserved protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AFX9_PLAHL)

HSP 1 Score: 65.9 bits (159), Expect = 1.140e-8
Identity = 59/137 (43.07%), Postives = 70/137 (51.09%), Query Frame = 1 
Query:   73 RKPKVEVVFDPDARKDYLTGFHKRKVARRRFGLAMQEIKDRKERLXXXXXXXXXXXXXXXELGVQED-----------LDSFDIKARAREEAKAKADEQVRVDFEDGHTQTMFGDTVTVTTVEGIPDSDDEDAIEME 450
            +K K+ V FDPD RK+YLTGFHKRK  RRRFGL M+  K +K +L      XXXXXXXXX                  LD  D    A+   K +        F D  TQ  FGD VTVTT  G   S+ +D+ E E
Sbjct:   22 KKSKLVVTFDPDKRKEYLTGFHKRKQERRRFGLDMEAYKTKKRQLEIKRQRXXXXXXXXXXXXXXXXXXXXXXXXXXXLDDGDDACSAKAVTKIET-------FNDSFTQGKFGDIVTVTTSVGNLQSESDDSCEEE 151
[Close]
BLAST of mRNA_F-serratus_M_contig1013.223.1 vs. uniprot
Match: K8Z1J5_NANGC (Rrna processing protein rrp17 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z1J5_NANGC)

HSP 1 Score: 62.0 bits (149), Expect = 3.320e-8
Identity = 35/59 (59.32%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:   37 HTMGRRISKDGGRKP--KVEVVFDPDARKDYLTGFHKRKVARRRFGLAMQEIKDRKERL 207
            HT  R   K GG K   K+ +VFDP+AR++YLTGF KRK  RR FGLAMQ++K+RK RL
Sbjct:   53 HTHARL--KIGGYKKNGKLALVFDPEARREYLTGFSKRKKERRTFGLAMQQVKNRKARL 109
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1013.223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1V9YL26_9STRA2.440e-1039.58Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A225X1U8_9STRA4.380e-1042.14Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A485LKQ5_9STRA4.610e-1038.46Aste57867_22725 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S2KJM5_9STRA8.360e-1040.86Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A2P4XC52_9STRA1.060e-944.70Nucleolar protein 12 n=1 Tax=Phytophthora palmivor... [more]
A0A0W8DIR9_PHYNI1.140e-940.1460S ribosomal protein L44 n=9 Tax=Phytophthora Tax... [more]
K3WTL5_GLOUD1.560e-938.24Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A6G0X6U2_9STRA5.130e-937.59Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A0P1AFX9_PLAHL1.140e-843.07Uncharacterized conserved protein n=1 Tax=Plasmopa... [more]
K8Z1J5_NANGC3.320e-859.32Rrna processing protein rrp17 (Fragment) n=1 Tax=N... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1013contigF-serratus_M_contig1013:242993..249897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue4.4e-11
Seed eggNOG ortholog36331.EPrPI00000019071
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Nucleolar protein 12.. Source PGD
EggNOG OGs1MC6P@121069,2CYVS@1,2S6RV@2759
Ec32 ortholog descriptionNucleolar protein 12
Ec32 orthologEc-04_005670.1
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons3
Model size1101
Cds size825
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1013.223.1prot_F-serratus_M_contig1013.223.1Fucus serratus malepolypeptideF-serratus_M_contig1013 243035..249663 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928812.9956048-UTR-F-serratus_M_contig1013:242992..2430341622928812.9956048-UTR-F-serratus_M_contig1013:242992..243034Fucus serratus maleUTRF-serratus_M_contig1013 242993..243034 +
1690962583.556882-UTR-F-serratus_M_contig1013:242992..2430341690962583.556882-UTR-F-serratus_M_contig1013:242992..243034Fucus serratus maleUTRF-serratus_M_contig1013 242993..243034 +
1622928813.0893924-UTR-F-serratus_M_contig1013:249663..2498971622928813.0893924-UTR-F-serratus_M_contig1013:249663..249897Fucus serratus maleUTRF-serratus_M_contig1013 249664..249897 +
1690962583.6120589-UTR-F-serratus_M_contig1013:249663..2498971690962583.6120589-UTR-F-serratus_M_contig1013:249663..249897Fucus serratus maleUTRF-serratus_M_contig1013 249664..249897 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928813.012325-CDS-F-serratus_M_contig1013:243034..2431081622928813.012325-CDS-F-serratus_M_contig1013:243034..243108Fucus serratus maleCDSF-serratus_M_contig1013 243035..243108 +
1690962583.5733807-CDS-F-serratus_M_contig1013:243034..2431081690962583.5733807-CDS-F-serratus_M_contig1013:243034..243108Fucus serratus maleCDSF-serratus_M_contig1013 243035..243108 +
1622928813.0319126-CDS-F-serratus_M_contig1013:248527..2486331622928813.0319126-CDS-F-serratus_M_contig1013:248527..248633Fucus serratus maleCDSF-serratus_M_contig1013 248528..248633 +
1690962583.582305-CDS-F-serratus_M_contig1013:248527..2486331690962583.582305-CDS-F-serratus_M_contig1013:248527..248633Fucus serratus maleCDSF-serratus_M_contig1013 248528..248633 +
1622928813.0727174-CDS-F-serratus_M_contig1013:249018..2496631622928813.0727174-CDS-F-serratus_M_contig1013:249018..249663Fucus serratus maleCDSF-serratus_M_contig1013 249019..249663 +
1690962583.5928912-CDS-F-serratus_M_contig1013:249018..2496631690962583.5928912-CDS-F-serratus_M_contig1013:249018..249663Fucus serratus maleCDSF-serratus_M_contig1013 249019..249663 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1013.223.1

>prot_F-serratus_M_contig1013.223.1 ID=prot_F-serratus_M_contig1013.223.1|Name=mRNA_F-serratus_M_contig1013.223.1|organism=Fucus serratus male|type=polypeptide|length=275bp
MGRRISKDGGRKPKVEVVFDPDARKDYLTGFHKRKVARRRFGLAMQEIKD
RKERLEERKERREAFKERREELGVQEDLDSFDIKARAREEAKAKADEQVR
VDFEDGHTQTMFGDTVTVTTVEGIPDSDDEDAIEMERLERELLEEKKRLR
AERVAGKGRGGGGRVYKPGKVGRGVAGSAEGTAEERWSLAAVSKRLAANM
PTKPRKGSTKRGGSSLGAETSLEKGKKKGKKGKKGTAAGAGGIAGAGAAS
ALVDKARGSLPRTELSKGKKRKKR*
back to top

mRNA from alignment at F-serratus_M_contig1013:242993..249897+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1013.223.1 ID=mRNA_F-serratus_M_contig1013.223.1|Name=mRNA_F-serratus_M_contig1013.223.1|organism=Fucus serratus male|type=mRNA|length=6905bp|location=Sequence derived from alignment at F-serratus_M_contig1013:242993..249897+ (Fucus serratus male)
GACAAGACACAGTTTATACTCTTGGAGGCAGACATCCACACGATGGGCCG
CAGGATTTCCAAAGATGGTGGAAGGAAGCCAAAAGTGGAGGTTGTCTTCG
ATCCCGATGCCAGAAAGTGAGAGTACATCGAGTGCCCAATTTTCTTGATC
CTTTCCCTTTCAAAATAGATTTTCTTTACATTTACAGAGTCTTGTACGGA
TACTAGCTTGCAGAGTTAATTTCTGGTGAGAGCTTTGTCGATAGCGGCCC
CTGCCGTCAGCATCTAAATGTTCCACACACTACAGAGTAGTTTTCTGCTT
CTCTCGAAGGTTGGGTCGTTGTATATGTATTCATCGACTGTCGAAGGCGT
TAGCGTTTTTTTCTTTTGAAGTGCGCCCGCTGTTGGACTTTCACAACCTC
TAGACTGGACACACGGTACTCAATACTAAAACAATTTGGGAATGGCTATT
TGCCCCACCGGTGGACCATACCCAAATTTACCCCACCACCTGGATCTCGC
GCCAGAAGACACGGTTGGTCACAATACATGCATGAGTGTGTTGGCGCGTT
GCAGGGCTATCATGGGGTCATTCGTGCAGCCCAAACGGTCCTGTCTACGT
GATGTTACGGCCGGTGGGGTGGTTGGTGTTTTCTGGTATGTAAGGGCAAA
TAGCCGTACACATGGCGGAATGGGATTTGCCACGCGGTTTTTACGAATTT
TCACCAGAAATTTTGACACGTTATTAAGACCGCTCTTGCGAAGAGGACCA
CTTCTGCACATTTTGGTTTTAGTTTTTTTTTCGTAAGCTATGGTATGATA
GCCGGATATAAGTAGATGTGGGAATATTTGTTTCGCGACGAAATGATGGA
AAAAATAAAAATAAATAAAAATGTGCTGGGGTGGTCCTCTCCGCAAGAGC
GGTCTAAATCACGTTTCAAAATTTCAGGTGAAAAATCGTAAAAACCGCGT
GGCAAATCGCGATACCCCCACATTTCCTCAGTTCACTTGTGTTTTGTATC
GGAATCTTTACGAGGCCGCAACTCTTGATAGAAAACGAGGCGAGCCTTGT
AACTACCACCCACGCTCTTGCGGTGCTCCTGGATTCGTGTACACCAAATT
TCAGCTTGATCCGTGACACTTTTTTTCATACTGATTTTAGTATAGGAAGT
ATCCTCCACTACGCCGCCAATTGGTCATTGTTTACCAAAATCAACTCGGA
TTCGAAAAATTCCGGCGCCTGCGCTTCCCTTTTTGCCGTTTAGGAGCAGC
CTCCAAATTTCAAGCTTTAACTCGTAGAAACGGCAGAGCGAGACATGAAC
GAACAGAAGTCAGTTTCTTGGCCAGCCCAGCCTATAGCAGAAAACACCAA
CCACCCCATCGGCCGTGGTAGCACGTAGACAAGATCGTTTGGGCTGCACG
ATAGACCCGATAATAGCTAACCCTAACCCTAACACACCCATGTATGTACT
GTGACCAACCAAGTCTTCTGGCGCGAGATCCAGGTGGGGGGGTAAACAAG
AGAATAGCCCACCGGTGGGCCAAATAGCCATACCCAAACAATTAAGGACT
AAATTGCACCAGTAAAGTCGAACCGCTGTACAACAGTTGTATTAGCAATG
TCAAAACGTTTAAGGTAGGATCAACATTGGGTCTAGGATCGGATGGGTGT
CGATTGCTTAAAGAAAACCTGAACGCATCTAGACCTTCTGAGCATTTCGT
TGTTGATTCACACATTCAGCGTATTATTCTTGCAACTGAAAAAACTACGG
TGACACAACAAGCCAGCCATAGATAGACCTATCAAATGCCAATCCCGCTC
GTGGTCACCCAGAGGAACGAAGGTCAACGGGTTACATCATGATGACAGCC
CGCTACTCAAACCAACAGAGATGATCCAAATCGCGACAAAACCCTTGCCA
GGTCCAACCACCCGAGAAAATCGGAAACTTATCGGCGTCCATACGATGTA
TATGGATACGAATTACAGTCTCTGTTGTCTGGAGTGCTGCCAGTATTTCA
GAATCTGACTAACAAGCTACAGATAACACTGTCTGATGTGCTGGCCACCC
AATCAAAAGTGATAAAGCAAGTTTTCTAGCTCTTAGTATAGGAGGGTTAC
ACGAAAACAAGTTATGCGGCAGTTTACAGGCAATGACACCTGCCAAAGTC
AAAACGGTTAACCAAACCTCCATATTCCATATCGAGAGCAACCTCAATCG
ACTCGGATTGTAAAGGAAAATCTGAACGCATCTAGACCTTCTGGGCatac
tATACTATACTATACTATACCCCAGTCTgGGGGGAAACACGTCAAAACGT
TTAGGTGGTATCATAGGCTGCGAAGACAAAATCTCTTTTGGCATTTAATC
CAGGGCTTCGCGCGGTACCGACTTTCCGAGCAACGGTGCGGGAAAACGTT
CACGTTTGTGTACCGTGGTATGGGAACGGGACGGGAAGGCAGAAGGTTGA
CGGGATGGGATCGGAATTAATGATTTCCCGGTGGGACGGGAACGGTCGGG
AATTGAAGCGGTCGGAAAACAATCCGGGAAGGAAGATGGAATGAACGTGA
GGTGTGTGGTTAAGAAGAAGTGGCCGAGGTCGGGATTGGCACCAGAGCGC
GTGACGACGTGTGGCCACCTGATGAAGTACGTCCGAGCCAGCAAGGGAAT
GAAGATCAAAAGCGGCGGGACAAGCGGTCTGCTGGCCCACCTCGAGAGCA
AACACCCAGCGGAGCACGAAGCAGCTGTCAAGGACAGCAAGCAACCATCG
CGCGCTTCGCTTTCCCTTCTGAGGTGTGCCTGCTGTCCTTGACAGCTGCT
TTGTGCTCCGCTGGGTGTTTGCTCTCGAGGTGGGCCAGCAGAGGCCGCTT
TTCCCACCGCTTTTGATGTTCATTGTTTTGCTGGCTCGGACGTACTTCAT
CAGGTGACCACACGTCGTCACGCGCTCTGGTGCCAATCCAGACTTCGGCC
ACTTCTTCTTAACCACACACCTCACGCTCATTCCATTTTCCTTCACCTCG
GCTGGGCTGAGCTCCCGAACGTGTTTCCACACACCCGATGTGTTCTTGAT
TGCGCGACCACATGCCTCTCCCACCGCCGGTTGGATGGGATCACCAGCAG
GCGGTGCTTGGGGTGGTGATACTACTACGGGCGAGGAAGCAGAGCCGCCG
CCCGCATCGCCCCCAACTTCCATACGCCTTTAGTGCGTTGGGTATTCAAT
GTGTGTGTGCGGCTTTGGCTGATGTGGCTGAGCCGTGTGTATGTGTATGT
GTGTCTTGTTTTTTTGTTTGTGGCGCGCGCGCATTCCATATCTATCTGCA
CTGATTATTTTATTATTTTACACCTGGTTGTATGTGTATATCCACACAGC
AGTTGGTACGAATGTTTGATGGGGGAGACTGGGATAAATCATACTCTAGT
GGAATATGGGATGGGAAAAATGATTCAACAATCGGGAATGAGATGGTAAG
TGAGTGGACAGACAGAGGGAAGTGGGGCGGGAGAAAGAGTGTCAAAGGCG
GGAACGGGAGTGGCACGGGAACAGTTCATCTTGCGGTGGGACGGGGAACG
CGGGAACAGAAATCAGTAACGGGAGAGGTCGGGAAAGGAAATATCGCAAC
GGTTCCTGTTCCCGTTCCCGTACTGTCCCGACCACTTTTCCCGTCCCGCC
CTTAATCGCGCGGAGCCCTGATTTAATCGGGTTCCTCAATGGTAGTGACA
ATCGATCAACAGCAGTATAATGTCGGATTTGAAAGAAAAATCTGAATGCG
CCTAGACCTTCTGAGCATCCCCCAGTCAGGTGGGGTCATAGTGTAGGCTG
CAAAAACAAAACCTCCCCATGGCATTTGAACGGGTGCCCCGATGGTAGTA
ACATTGGGTCAACAGTATTATGTCGGGGAGAAGCCCACCGTTGTACTGTA
CACTTATATTAACCGCCACGCAGGGACACAAAAAAAACTTTAACAAACAA
AAAATATTGTAGTACATACCTCAACCAAAACCATCCAAAAACAATGTAGT
ACGTAAATCAGATACCAGTAGGTTGTTGTACATAATTTATCAGTGTACAG
CAGTACAATACAGTACAGTATCATAGTAATATTAGTGTACAATAATGAGT
GTCATAGAACAGAAGGTCTAGGTTTGGTCACAATACACTGTTGTGATCTA
ATAGTGTAGTACATAATAAGAACGTTATGGGAATATAGGATTGGCAACAA
TGTTACAGTTTCGTTTTACAACTATTAACAGTCATAGTCCATAGGGACTT
TATACTAAGTTGTCTACGTGTATTCAGTACGTGTTCAGTACGTGTTTGTA
TTTCACTCTTGGCGTTAAATTTGTAACTAAAGGATGATTAATACAGGGCA
GTTATTAGTAATGTTGACACCTGCCTACCCACGGCCAGCGTTCTCAGCAA
CAAAGCAGACAAATCACGCTCCAATCAGTTTTGATCAACAAGCCCAAGTT
CCTCAAGGCCACACATCATACAGAAATTATAAGGAAAATAAAAATACCGA
GATCCATGATGGTGGAGGCCTTGAGCTGGTGAAGCCGACGTGCGAGCCAG
CATCCAGCCGTCCAAAGCCCTACGAATCTTGCCCGTATCCACCCGATAGA
GCACTACCAGGCTCTCCGCGACAGTCCTCCCTGCCTCTCGCTTGCCACCA
CCTCCCGAAGGACACCAAATTGGAGCTCGGAAGACGCGCGCACCTGGGAA
CACCATCCGCAACCAACCATACCGCCGCCGCGTCTCAACCGATCGGGGCG
AGTCGCGAAGACAGCTAGTTGGCTGCATCTCTCGAGGGCGAGCCCGGCCC
TACACCCGCCGGAAAGACCCTCCCACACTCATACCCCGGAACCAGGTTTC
GGAGGGAGAGGGCACGGTGTTTATACTATAGTGCATATTGTCGTAAACCA
AGTCTGACTTTATTCCCTTTCTTGACAGGACATCTGTAGTTCAGACAGTC
AGGGGGCTGGAAAAAGAGAGGGCTGGCGCGGGATGGGACAGCCAAACCTG
TCTCACTAGACCAGATTCATTCTCAGGGGCAAACGGGGACAAGGGAAATT
CATTTTGAAGTTCAGCTGACCGCAAGCAGGATCGGAAACTAGTCCCCAAT
CCACCCTATGTTATTATCGCAAGCGCACAGCTTACACACAGCAATAATTG
GTAGTGTAAGTTTAATATAATTGGCACGACCAGGGATTCTGCGCGTTTAG
ATTTCTACACACAAGTATTGCTCGTAGCAGCTGGTGTAGCTTTTGAATTT
TACTGCTCCCCGATTCCTGCAGAACGCAGTGGACCAGTTTCGTTTCATAT
CATTTTCCCTCTTGTCGATGAAATTGTGTCCCATGCTGTTCGTTTTCTTC
CGTGCAGCTGCCGCGAATTGGACCGACAAACAACCCTGTATCGCAGTGGA
ATTGGTTGGGACTCAATAATCGCAAAGGCAACTTAATGTGAACAACACCC
CGCCCCCCCCCCCTCCCCTCGTCAGAGAAGATTACGACCTGTCTTTCATG
AAGTATTTATATTCGCTTCGATGTACCATCAACAGGGACTACTTGACCGG
GTTTCACAAGCGGAAGGTGGCCAGGAGGCGTTTCGGGCTGGCCATGCAGG
AGATAAAGGACCGCAAAGAACGCTTGGAGGAGAGAAAGGAGGTGAGGCAC
CAAATGCAGTGTCGTGGAGCTAAACGCGTTGGGTGAGAAGGCGTCGTCGA
AGTGTCGCGCGCGGCAAGAGTAGCTTTCGTATACCTGTGCGACACCCTGT
GCCCGCTTCTCTTGAGGGTTATGGCAGCTACAGCTACAGCACAGAAGCTA
TTGTCAGTGCGAGGGATACCTCGAGAAGTGAACAGTACCATGTATCTTGA
TGACGAACCTGCGTCTAGGAGACGCGGTAAAATTTTCACTTCGTCTGTTT
TGCTTACTCCAAAACGACGAGATGGGAGCGTGTTGATTTATTTTTGCATG
TGGTGGCTGAACTCTCAACTGCTTCGCCCCCCACCCTCAAACGGCTGCGC
CTCCTGCGCGACGACCCGGGCTTCAGAGACGGGAGGCCTTCAAGGAGAGG
AGGGAAGAGCTTGGCGTCCAGGAAGATTTGGATTCGTTCGACATCAAAGC
GAGGGCGAGAGAAGAGGCCAAGGCAAAAGCAGATGAACAGGTTCGGGTAG
ACTTCGAGGACGGTCACACACAGACCATGTTCGGCGACACCGTCACGGTT
ACCACCGTGGAGGGCATTCCTGACAGCGACGACGAAGACGCGATTGAGAT
GGAGCGGCTAGAGAGAGAGCTCCTCGAAGAGAAAAAGCGCTTGCGTGCGG
AACGGGTTGCTGGGAAGGGGCGCGGCGGCGGCGGAAGGGTTTACAAGCCA
GGGAAGGTAGGAAGGGGTGTTGCCGGAAGCGCGGAAGGGACTGCAGAGGA
GCGTTGGTCGCTGGCTGCGGTGTCGAAGCGCCTAGCCGCGAACATGCCCA
CGAAACCGCGAAAGGGGTCAACGAAGCGAGGTGGCAGCTCGCTCGGGGCG
GAGACATCGTTAGAGAAGGGCAAGAAAAAGGGGAAGAAGGGAAAGAAGGG
CACGGCGGCGGGGGCGGGCGGTATTGCAGGAGCAGGAGCAGCTTCAGCGT
TGGTCGACAAGGCGCGAGGAAGTTTGCCGAGGACGGAGCTGAGTAAGGGC
AAGAAGAGGAAGAAACGCTAAACATCGACGGGGAGGGGTTTCCCTTCTGC
GGTTGATGTTTTGCTCAGTTTAGTCGTCGCACATATTAAACTAACTGTCT
GTGGTTCATATTTTGTTCCATGTATGGAGGTCCCAGTGGTCGATGAGGTT
GTTTGTTCAAGCATGAATTGCGAACAAGGGCGAGAGCTTTGTAAGTATTA
CGCGAACCTGCCGGCAGCAGAAAGGTGAAGCGTTGAAATAAAATCATAAA
AGCCT
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1013:242993..249897+

>mRNA_F-serratus_M_contig1013.223.1 ID=mRNA_F-serratus_M_contig1013.223.1|Name=mRNA_F-serratus_M_contig1013.223.1|organism=Fucus serratus male|type=CDS|length=1650bp|location=Sequence derived from alignment at F-serratus_M_contig1013:242993..249897+ (Fucus serratus male)
ATGGGCCGCAGGATTTCCAAAGATGGTGGAAGGAAGCCAAAAGTGGAGGT
TGTCTTCGATCCCGATGCCAGAAAATGGGCCGCAGGATTTCCAAAGATGG
TGGAAGGAAGCCAAAAGTGGAGGTTGTCTTCGATCCCGATGCCAGAAAGG
ACTACTTGACCGGGTTTCACAAGCGGAAGGTGGCCAGGAGGCGTTTCGGG
CTGGCCATGCAGGAGATAAAGGACCGCAAAGAACGCTTGGAGGAGAGAAA
GGAGGGACTACTTGACCGGGTTTCACAAGCGGAAGGTGGCCAGGAGGCGT
TTCGGGCTGGCCATGCAGGAGATAAAGGACCGCAAAGAACGCTTGGAGGA
GAGAAAGGAGAGACGGGAGGCCTTCAAGGAGAGGAGGGAAGAGCTTGGCG
TCCAGGAAGATTTGGATTCGTTCGACATCAAAGCGAGGGCGAGAGAAGAG
GCCAAGGCAAAAGCAGATGAACAGGTTCGGGTAGACTTCGAGGACGGTCA
CACACAGACCATGTTCGGCGACACCGTCACGGTTACCACCGTGGAGGGCA
TTCCTGACAGCGACGACGAAGACGCGATTGAGATGGAGCGGCTAGAGAGA
GAGCTCCTCGAAGAGAAAAAGCGCTTGCGTGCGGAACGGGTTGCTGGGAA
GGGGCGCGGCGGCGGCGGAAGGGTTTACAAGCCAGGGAAGGTAGGAAGGG
GTGTTGCCGGAAGCGCGGAAGGGACTGCAGAGGAGCGTTGGTCGCTGGCT
GCGGTGTCGAAGCGCCTAGCCGCGAACATGCCCACGAAACCGCGAAAGGG
GTCAACGAAGCGAGGTGGCAGCTCGCTCGGGGCGGAGACATCGTTAGAGA
AGGGCAAGAAAAAGGGGAAGAAGGGAAAGAAGGGCACGGCGGCGGGGGCG
GGCGGTATTGCAGGAGCAGGAGCAGCTTCAGCGTTGGTCGACAAGGCGCG
AGGAAGTTTGCCGAGGACGGAGCTGAGTAAGGGCAAGAAGAGGAAGAAAC
GCTAAAGACGGGAGGCCTTCAAGGAGAGGAGGGAAGAGCTTGGCGTCCAG
GAAGATTTGGATTCGTTCGACATCAAAGCGAGGGCGAGAGAAGAGGCCAA
GGCAAAAGCAGATGAACAGGTTCGGGTAGACTTCGAGGACGGTCACACAC
AGACCATGTTCGGCGACACCGTCACGGTTACCACCGTGGAGGGCATTCCT
GACAGCGACGACGAAGACGCGATTGAGATGGAGCGGCTAGAGAGAGAGCT
CCTCGAAGAGAAAAAGCGCTTGCGTGCGGAACGGGTTGCTGGGAAGGGGC
GCGGCGGCGGCGGAAGGGTTTACAAGCCAGGGAAGGTAGGAAGGGGTGTT
GCCGGAAGCGCGGAAGGGACTGCAGAGGAGCGTTGGTCGCTGGCTGCGGT
GTCGAAGCGCCTAGCCGCGAACATGCCCACGAAACCGCGAAAGGGGTCAA
CGAAGCGAGGTGGCAGCTCGCTCGGGGCGGAGACATCGTTAGAGAAGGGC
AAGAAAAAGGGGAAGAAGGGAAAGAAGGGCACGGCGGCGGGGGCGGGCGG
TATTGCAGGAGCAGGAGCAGCTTCAGCGTTGGTCGACAAGGCGCGAGGAA
GTTTGCCGAGGACGGAGCTGAGTAAGGGCAAGAAGAGGAAGAAACGCTAA
back to top