mRNA_F-serratus_M_contig1013.222.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1013.222.1
Unique NamemRNA_F-serratus_M_contig1013.222.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1013.222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1013contigF-serratus_M_contig1013:241239..242880 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size400
Cds size246
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1013.222.1prot_F-serratus_M_contig1013.222.1Fucus serratus malepolypeptideF-serratus_M_contig1013 241239..242375 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928811.0207741-CDS-F-serratus_M_contig1013:241238..2413221622928811.0207741-CDS-F-serratus_M_contig1013:241238..241322Fucus serratus maleCDSF-serratus_M_contig1013 241239..241322 -
1690962582.8412006-CDS-F-serratus_M_contig1013:241238..2413221690962582.8412006-CDS-F-serratus_M_contig1013:241238..241322Fucus serratus maleCDSF-serratus_M_contig1013 241239..241322 -
1622928811.033749-CDS-F-serratus_M_contig1013:242213..2423751622928811.033749-CDS-F-serratus_M_contig1013:242213..242375Fucus serratus maleCDSF-serratus_M_contig1013 242214..242375 -
1690962582.8502853-CDS-F-serratus_M_contig1013:242213..2423751690962582.8502853-CDS-F-serratus_M_contig1013:242213..242375Fucus serratus maleCDSF-serratus_M_contig1013 242214..242375 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928811.0458357-UTR-F-serratus_M_contig1013:242375..2424691622928811.0458357-UTR-F-serratus_M_contig1013:242375..242469Fucus serratus maleUTRF-serratus_M_contig1013 242376..242469 -
1690962582.8600192-UTR-F-serratus_M_contig1013:242375..2424691690962582.8600192-UTR-F-serratus_M_contig1013:242375..242469Fucus serratus maleUTRF-serratus_M_contig1013 242376..242469 -
1622928811.0581489-UTR-F-serratus_M_contig1013:242820..2428801622928811.0581489-UTR-F-serratus_M_contig1013:242820..242880Fucus serratus maleUTRF-serratus_M_contig1013 242821..242880 -
1690962582.8690276-UTR-F-serratus_M_contig1013:242820..2428801690962582.8690276-UTR-F-serratus_M_contig1013:242820..242880Fucus serratus maleUTRF-serratus_M_contig1013 242821..242880 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1013.222.1

>prot_F-serratus_M_contig1013.222.1 ID=prot_F-serratus_M_contig1013.222.1|Name=mRNA_F-serratus_M_contig1013.222.1|organism=Fucus serratus male|type=polypeptide|length=82bp
METAVSKRERDGRDRGVTAANGNGGGEPRKRPRSRFAPAEADGPAPSAPS
ASDELSDLDKMIAAAKAQALQKSVQAQKAAAI
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mRNA from alignment at F-serratus_M_contig1013:241239..242880-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1013.222.1 ID=mRNA_F-serratus_M_contig1013.222.1|Name=mRNA_F-serratus_M_contig1013.222.1|organism=Fucus serratus male|type=mRNA|length=1642bp|location=Sequence derived from alignment at F-serratus_M_contig1013:241239..242880- (Fucus serratus male)
TGCAGGCCTCACAGCACAGGAGCGAGGAAACGGTTTTAATCACACGCGGA
GAAGGCACCGGTAAGCGATATCACACTCTACATGGAGATGTTTTCTTTAG
CTGAGGATTATCGCTGGTTCTGTTGTAGCTGAGTCCGGAGCGAACCTGAC
TTTTGGTCGCCGAGTGTGTCGATCCCACCACTAGTGCAGCGCCCTACAAA
CATGGTACTTCGAAATGGCCCGCCCGTTTCTGCCCAATTCTCGTACGGTG
GCGTAGGTCAAGGCATCCCTTGTTGCAAATCCGCGAACGGCGCCCAAATA
GACGAACCATCGCGCTCAAGATAACAAAGTCCCTCTTAGAAGAACTTTCC
CCCTCGTCCCCTTGTCGTCTCCACGTCCCTCTCGTCCCTCCCCACCGCGA
TTGTCTCTCAGACACATCGCGTTCTGTCGGTACTGTCTGCTGACACTACT
GTCGTCAAAACAGAAGGCCGTGCGCATCGAGCTCCGCCTTGCTTGAGTGT
CTGCCATGGAGACGGCCGTCAGCAAGAGGGAGAGGGACGGAAGAGATCGC
GGCGTGACTGCTGCGAATGGCAATGGCGGTGGAGAGCCGCGCAAGCGGCC
GCGCAGCAGGTTCGCACCCGCGGAGGCAGATGGACCAGCACCGTCGGCAC
CATCGGCGTCCGATGAGGTGCAGGCCAAAAGGCAGAACGAGGAAGAGTGG
GTAGAGGCACGGGTGACATCGAAGTATGTGGCGGAACTATGTTCGCCTTA
GCTTGAAAATGATCAAAACGCTCTTGACGTGAACCGCTTGTTTCACTGCT
GTTTTTTACTTTTCTCGAAATGCGGTCAAAATCATAACATCCATGTGTAA
GACCTTGACGTCTGGCTAGCGCCTGGTGAATTGACTCTTGGCCAAGAACA
CATTACGTCGAACACGTGGGTTAGATGGATTGCAGCATTGGAACTAGAAG
TACCCCGTGATACGGCATAACATTGGGTGAAACCCTCCGTGATACTTTGC
TCTCCGACCAATGGTAAGTTATCTTGTCTTTACTCTACAGGAGCAAAACA
CATGTGTAGTGCGGGTACTGTTTGTACGGCAAATGAAAATCTGTTCTGCG
AACTTTACTGTGAATTACCTCCTCGTCTACGACTTCGCGTCCCGGTGGCG
ATCTAGAAGATGTCAAGTGTTCTGTCAGCAGGGCAATCCGGGAAGCTATC
AGCCTCGCAGTCTCACGAGGATTTCAACTAGAGATGGCCTCCCACGGGTG
ATCTAACGATAAGACGCAATCACCTCGGAGCGCTCCATTCCGACGTAAGG
GACAAGCCTCCCAATGGTTGCAAAACCAACAACTCTCGACGCCAGCACTC
TCTAATATTTCCGGGACGTGGCGCCAGGGTCGCCCAGCTACTTCTAAGAG
ATAGTCGATATAGATTATAAAGTTTGCCTAATATACAAAAGAAGACGTCA
AGTCGCCGAAATCTCCGATGATTCTCTCTCATAAATGCCCTCTTTTTTCA
AGCGAAATCTGCAAGGCCTCGCCCCCGCCCTTGCCTTGCCGGCTCTTACC
CTTGACAGCTATCTGATCTCGACAAGATGATTGCCGCGGCGAAGGCGCAA
GCACTTCAGAAATCGGTCCAAGCGCAGAAGGCGGCAGCCATC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1013:241239..242880-

>mRNA_F-serratus_M_contig1013.222.1 ID=mRNA_F-serratus_M_contig1013.222.1|Name=mRNA_F-serratus_M_contig1013.222.1|organism=Fucus serratus male|type=CDS|length=492bp|location=Sequence derived from alignment at F-serratus_M_contig1013:241239..242880- (Fucus serratus male)
ATGGAGACGGCCGTCAGCAAGAGGGAGAGGGACGGAAGAGATCGCGGCGT
GACTGCTGCGAATGGCAATGGCGGTGGAGAGCCGCGCAAGCGGCCGCGCA
GCAGGTTCGCACCCGCGGAGGCAGATGGACCAGCACCGTCGGCACCATCG
GCGTCCGATGAGATGGAGACGGCCGTCAGCAAGAGGGAGAGGGACGGAAG
AGATCGCGGCGTGACTGCTGCGAATGGCAATGGCGGTGGAGAGCCGCGCA
AGCGGCCGCGCAGCAGGTTCGCACCCGCGGAGGCAGATGGACCAGCACCG
TCGGCACCATCGGCGTCCGATGAGCTATCTGATCTCGACAAGATGATTGC
CGCGGCGAAGGCGCAAGCACTTCAGAAATCGGTCCAAGCGCAGAAGGCGG
CAGCCATCCTATCTGATCTCGACAAGATGATTGCCGCGGCGAAGGCGCAA
GCACTTCAGAAATCGGTCCAAGCGCAGAAGGCGGCAGCCATC
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