mRNA_F-serratus_M_contig1013.219.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig1013.219.1 vs. uniprot
Match: UPI00031A0755 (ribonuclease R n=2 Tax=Pseudanabaenales TaxID=2881377 RepID=UPI00031A0755) HSP 1 Score: 264 bits (675), Expect = 8.220e-76 Identity = 170/432 (39.35%), Postives = 245/432 (56.71%), Query Frame = 3 Query: 6 FSDEAMEQVRAMVDTPPPDPEAETRRDLTHLKVYAVDSEDTLEVDDGLSVETLPNGGGEVIWVHIADVSRWVPEGSPLYRESRSRRTTSYLPEGSLPMFPAEVAHGVLSLGARKECYALSMGITLGEDGEIADVTVTPSLVKVTYRLTYEDVEDMLANGIARTSEEWQLGRLDELAQLRYRYRCGRGSVDRFQKSLDNIIKATEDPSSNGGYDVKITPEDPSSRSIRLVTEMMVLVGEGMGMVGARAGIALPYRNQKAPDVFPEEELNSMPVKYCRAQAAYKYMNSAVTATSPQQHWGLGLESYVQWSSPIRRFLDLLAHYQIKRWLSGRETLAGSRIMAEVEAGEGTVQ-AANRVMRQTRRYWIAEYFSRITGSDLEAYVLSYRDTRDKGGKVVYQLLLLGLGVNVPYMEAGITMELGETVIVRIVSSSAR 1298 FS+E + + + +PPPDP+A+ R DLTHLKVY VD T E+DDGLS+ETL +G +WVHIAD +RW+ G L E+R R TT YLP G +PMFP E+A G +SL C ALS GI L +DG+I D T+ P+L++ TYRLTY+DV++ML GI + E +L L A++R ++R +G++ + ED D+ I + S + ++V EMM+L GE G +A+P+R+Q P++ +EEL S+P + R A + M + +P +H LGLESY Q +SPIRR+LDL+ H+Q+K L G S + E+ G + A V RQT+RYW EY R D V+ R R+ G + + LGL + + + A + LGE + VR+ +S R Sbjct: 243 FSEETLTMAKQRLQSPPPDPDAQ-RLDLTHLKVYTVDDVSTQEIDDGLSLETLADGSHR-LWVHIADPTRWLMPGDDLDLEARRRCTTVYLPTGMIPMFPVELATGAMSLIQGHICCALSFGIDLTDDGDIRDYTIHPTLIRPTYRLTYDDVDEMLELGI---TAEPELQGLAHWAKVRGQWRMTQGAISINMPESSIKVSEAED-------DIVIEVFN-DSMARQMVAEMMILAGEVAARYGQAHALAIPFRSQPQPELPSDEELISLPTGWVRDSAIRRCMTRSEVGVTPSRHATLGLESYSQVTSPIRRYLDLVTHFQLKAHLRGEPLPFSSTEVTELAIGASSAAYEATLVERQTKRYWALEYLRRH--QDRVWDVMLLRWLREDEGLGLIMVEDLGLELAMRFNRA---VALGEQLQVRVSHASPR 656
BLAST of mRNA_F-serratus_M_contig1013.219.1 vs. uniprot
Match: UPI0016864128 (ribonuclease R n=1 Tax=Microcoleus sp. FACHB-1515 TaxID=2692821 RepID=UPI0016864128) HSP 1 Score: 264 bits (675), Expect = 9.120e-76 Identity = 164/405 (40.49%), Postives = 228/405 (56.30%), Query Frame = 3 Query: 6 FSDEAMEQVRAMVDTPPPDPEAETRRDLTHLKVYAVDSEDTLEVDDGLSVETLPNGGGEVIWVHIADVSRWVPEGSPLYRESRSRRTTSYLPEGSLPMFPAEVAHGVLSLGARKECYALSMGITLGEDGEIADVTVTPSLVKVTYRLTYEDVEDMLANGIARTSEEWQLGRLDELAQLRYRYRCGRGSVDRFQKSLDNIIKATEDPSSNGGYDVKITPEDPSSRSIRLVTEMMVLVGEGMGMVGARAGIALPYRNQKAPDVFPEEELNSMPVKYCRAQAAYKYMNSAVTATSPQQHWGLGLESYVQWSSPIRRFLDLLAHYQIKRWLSGRET-LAGSRIMAEVEAGEGTVQAANRVMRQTRRYWIAEYFSRITGSDLEAYVLSYRDTRDKGGKVVYQLLLLGLGV 1217 F ++ + TPPPDP+ R DLTHLKVY +D E T E+DDGLS+ETLP+G +W+HIAD +R+V G L E+R R TT YLP G +PMFP E+A G +SL + C ALS G+ L E G IAD + PSL+K TYRLTYEDV++ML G+ +E L + + A+LR+++R +G++ ++ IK +D ++ I D S RLV EMM+L GE G G + LPYR Q P++ PEEEL +P RA A + M + +P +H LGL++Y Q +SPIRR+ DLL H+QIK L G + G + V+A T + V RQT RYW EY R + +L + + G V+ + L + L + Sbjct: 255 FPSRVIDMAHRCLQTPPPDPDT-NRLDLTHLKVYTIDDESTKEIDDGLSLETLPDGIHR-LWIHIADPTRYVLPGDELDLEARRRCTTVYLPTGMIPMFPPELATGPMSLVQGRLCTALSFGVILDESGAIADFEIHPSLIKPTYRLTYEDVDEMLDLGVEAEAE---LETIAQFAKLRHQWRHQQGAISIHMP--ESSIKVQDD-------EITIEVLDDSIAR-RLVAEMMILAGETAGRYGQEHSLPLPYRGQAQPELPPEEELMLLPSGPVRASAIRRCMPRSEMNIAPVRHASLGLDTYTQVTSPIRRYTDLLTHFQIKAHLRGEDLPFDGETLKELVQAVSSTAYESVLVERQTNRYWGLEYLRRNSDEVWNGLLLRWLREHENLGLVLLEDLAIELAM 644
BLAST of mRNA_F-serratus_M_contig1013.219.1 vs. uniprot
Match: A0A7T5E447_9CYAN (RNB domain-containing protein n=3 Tax=Cyanobacteria TaxID=1117 RepID=A0A7T5E447_9CYAN) HSP 1 Score: 264 bits (674), Expect = 1.120e-75 Identity = 171/433 (39.49%), Postives = 243/433 (56.12%), Query Frame = 3 Query: 6 FSDEAMEQVRAMVDTPPPDPEAETRRDLTHLKVYAVDSEDTLEVDDGLSVETLPNGGGEVIWVHIADVSRWVPEGSPLYRESRSRRTTSYLPEGSLPMFPAEVAHGVLSLGARKECYALSMGITLGEDGEIADVTVTPSLVKVTYRLTYEDVEDMLANGIARTSEEWQLGRLDELAQLRYRYRCGRGSVDRFQKSLDNIIKATEDPSSNGGYDVKITP-EDPSSRSIRLVTEMMVLVGEGMGMVGARAGIALPYRNQKAPDVFPEEELNSMPVKYCRAQAAYKYMNSAVTATSPQQHWGLGLESYVQWSSPIRRFLDLLAHYQIKRWLSGRETLAGSRIMAEVEAGEGTVQ-AANRVMRQTRRYWIAEYFSRITGSDLEAYVLSYRDTRDKGGKVVYQLLLLGLGVNVPYMEAGITMELGETVIVRIVSSSAR 1298 FS++ + V+ + +PPPD + R DLT LKVY VD T E+DDGLS+ETL +G + IW+HIAD +RWV G L E+R R TT YLP G +PMFPAE+A G +SL + C ALS GI LGE G++ D T+ SL+K TYRLTYEDV+++L GI E L R AQ+R ++R +G+++ +++IK E D+ I ED S+R ++V EMM+L GE G +A+P+R+Q P++ +EEL +P + R A + M + +P +H LGL SY Q +SPIRR+LDL+ H+Q+K L G S + E+ G T A V RQT+RYW EY R + +L + D G ++ + L L L M ++ LGE VR+ ++ R Sbjct: 242 FSEDTLTMVQQRLQSPPPDLDDPQRLDLTPLKVYTVDDASTQEIDDGLSLETLEDGR-QRIWIHIADPTRWVIPGDDLDLEARRRCTTVYLPTGIIPMFPAELATGPMSLVQGQICCALSFGIVLGEAGDVQDYTIATSLIKPTYRLTYEDVDELLELGITAEPELHDLARW---AQVRGQWRVTQGAIN--INMPESVIKVRE-----AEDDIVIEVLEDSSAR--QMVAEMMILAGEVAAHYGQTHDLAIPFRSQPQPELPSDEELIQLPTGWVRDSAIRRCMTRSEVGVTPSRHATLGLNSYSQVTSPIRRYLDLIVHFQLKAHLRGDPPPFSSHEVTELAQGASTAAYEATLVERQTKRYWALEYLRRNQSEVWDVMLLRWLREDDGLGLIMVEDLGLELA-----MRFNRSVALGEQFQVRVSHANPR 656
BLAST of mRNA_F-serratus_M_contig1013.219.1 vs. uniprot
Match: UPI0019DC012E (VacB/RNase II family 3'-5' exoribonuclease n=1 Tax=Leptolyngbyaceae cyanobacterium M65_K2018_010 TaxID=2747810 RepID=UPI0019DC012E) HSP 1 Score: 261 bits (666), Expect = 1.640e-74 Identity = 166/433 (38.34%), Postives = 243/433 (56.12%), Query Frame = 3 Query: 6 FSDEAMEQVRAMVDTPPPDPEAETRRDLTHLKVYAVDSEDTLEVDDGLSVETLPNGGGEVIWVHIADVSRWVPEGSPLYRESRSRRTTSYLPEGSLPMFPAEVAHGVLSLGARKECYALSMGITLGEDGEIADVTVTPSLVKVTYRLTYEDVEDMLANGIARTSEEWQLGRLDELAQLRYRYRCGRGSVD-RFQKSLDNIIKATEDPSSNGGYDVKITPEDPSSRSIRLVTEMMVLVGEGMGMVGARAGIALPYRNQKAPDVFPEEELNSMPVKYCRAQAAYKYMNSAVTATSPQQHWGLGLESYVQWSSPIRRFLDLLAHYQIKRWLSGRETLAGSRIMAEVEAGEGTVQ-AANRVMRQTRRYWIAEYFSRITGSDLEAYVLSYRDTRDKGGKVVYQLLLLGLGVNVPYMEAGITMELGETVIVRIVSSSAR 1298 F +E + + + +PP DP+ R DLT LKVY VD T E+DDGLS+ETL NG + +W+H+AD +RW+ G L E+R R TT YLP G +PMFP E+A G +SL + C ALS G++L G+IAD T+ PSL+K TYRLTYEDV++ML GI + E +L L AQ+R ++R +G++ +S +++A +D +++ + P+ + LV EMM+L GE G +A+P+R+Q P++ EEL +P + R A + M + + +P +H LGLESY Q +SPIRR+LDLLAH+Q+K L G S + E+ G + A V RQT+RYW EY R + +L + D G ++ + L L L M LGE + VR+ ++ R Sbjct: 242 FPEELLSMAQQRLQSPPSDPD-NPRVDLTQLKVYTVDDASTQEIDDGLSLETLANGT-QRLWIHVADPTRWLLPGDALDLEARRRCTTLYLPTGMIPMFPVELATGPMSLRQGEVCCALSFGVSLTAAGDIADYTICPSLIKPTYRLTYEDVDEMLDLGI---TAEPELQALARWAQIRSQWRLTQGAITINMPESTIKVLEAEDD------IVIEVLEDSPARQ---LVAEMMILAGEVAARYGQTHDLAIPFRSQPQPELPSPEELLQLPHGWVRDSAIRRCMTRSEVSVTPNRHATLGLESYSQVTSPIRRYLDLLAHFQLKAHLRGESLPFSSTEVTELAQGASSAAYEATLVERQTKRYWALEYLRRHQDQVWDVMLLRWLREDDGLGLIMVEDLGLELA-----MRFNRDAALGERLQVRVSHANPR 655
BLAST of mRNA_F-serratus_M_contig1013.219.1 vs. uniprot
Match: UPI0002ABD1AE (ribonuclease R n=1 Tax=Leptolyngbya sp. PCC 6406 TaxID=1173264 RepID=UPI0002ABD1AE) HSP 1 Score: 260 bits (665), Expect = 2.140e-74 Identity = 166/432 (38.43%), Postives = 239/432 (55.32%), Query Frame = 3 Query: 6 FSDEAMEQVRAMVDTPPPDPEAETRRDLTHLKVYAVDSEDTLEVDDGLSVETLPNGGGEVIWVHIADVSRWVPEGSPLYRESRSRRTTSYLPEGSLPMFPAEVAHGVLSLGARKECYALSMGITLGEDGEIADVTVTPSLVKVTYRLTYEDVEDMLANGIARTSEEWQLGRLDELAQLRYRYRCGRGSVDRFQKSLDNIIKATEDPSSNGGYDVKITPEDPSSRSIRLVTEMMVLVGEGMGMVGARAGIALPYRNQKAPDVFPEEELNSMPVKYCRAQAAYKYMNSAVTATSPQQHWGLGLESYVQWSSPIRRFLDLLAHYQIKRWLSGRETLAGSRIMAEVEAGEGTVQ-AANRVMRQTRRYWIAEYFSRITGSDLEAYVLSYRDTRDKGGKVVYQLLLLGLGVNVPYMEAGITMELGETVIVRIVSSSAR 1298 F++ A + + PPPDP+++ R DLTHLKVY VD T E+DDG+S+ETL +G + +WVHIAD +RWV G L ++R R TT YLP G +PMFP E+A G +SL + C ALS GI L G++ + PS ++ TYRLTYEDV++ML G+ SE L + E +Q+R ++R +G++ + ED D+++ + P+ + +V EMM+L GE G +A+P+R+Q P++ PEEEL +P R A + M+ + +P +H LGL SY Q +SPIRR+ DLLAH+QIK L G S M E+ G T A V RQT+RYW EY R +A +L + + G ++ + L L LGV + M LGE VR+ ++ R Sbjct: 244 FNEAAFAMAQQRLQNPPPDPDSQ-RLDLTHLKVYTVDDASTREIDDGVSLETLEDGR-QRLWVHIADPTRWVFPGDTLDLDARRRSTTLYLPTGMIPMFPLELATGPMSLIQGEVCCALSFGIILTAAGDVESYRIAPSHIRPTYRLTYEDVDEMLDLGVQAESE---LLAIAEWSQVRQQWRSTQGAIAIHMPESSIRVSEQEDD-----IDIQLLEDSPARQ---MVAEMMILTGEVAARYGQEHDLAIPFRSQPQPELPPEEELMQLPSGPARYSAIRRCMSRSEMGLTPARHATLGLASYSQVTSPIRRYTDLLAHFQIKAHLRGDPLPFSSTEMTELMQGASTAAYEAVLVERQTKRYWALEYLRRHPDQVWQAMLLRWLRESELLGLILLEELGLELGVRLER-----DMTLGEEFQVRVTHANPR 657 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1013.219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pages
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1013.219.1 >prot_F-serratus_M_contig1013.219.1 ID=prot_F-serratus_M_contig1013.219.1|Name=mRNA_F-serratus_M_contig1013.219.1|organism=Fucus serratus male|type=polypeptide|length=512bp MEQVRAMVDTPPPDPEAETRRDLTHLKVYAVDSEDTLEVDDGLSVETLPNback to top mRNA from alignment at F-serratus_M_contig1013:138555..155269+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1013.219.1 ID=mRNA_F-serratus_M_contig1013.219.1|Name=mRNA_F-serratus_M_contig1013.219.1|organism=Fucus serratus male|type=mRNA|length=16715bp|location=Sequence derived from alignment at F-serratus_M_contig1013:138555..155269+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1013:138555..155269+ >mRNA_F-serratus_M_contig1013.219.1 ID=mRNA_F-serratus_M_contig1013.219.1|Name=mRNA_F-serratus_M_contig1013.219.1|organism=Fucus serratus male|type=CDS|length=3072bp|location=Sequence derived from alignment at F-serratus_M_contig1013:138555..155269+ (Fucus serratus male)back to top |