mRNA_F-serratus_M_contig1013.217.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1013.217.1
Unique NamemRNA_F-serratus_M_contig1013.217.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1013.217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1013contigF-serratus_M_contig1013:124335..124665 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size332
Cds size318
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928811.1107602-UTR-F-serratus_M_contig1013:124334..1243471622928811.1107602-UTR-F-serratus_M_contig1013:124334..124347Fucus serratus maleUTRF-serratus_M_contig1013 124335..124347 +
1690962582.8798583-UTR-F-serratus_M_contig1013:124334..1243471690962582.8798583-UTR-F-serratus_M_contig1013:124334..124347Fucus serratus maleUTRF-serratus_M_contig1013 124335..124347 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928811.126121-CDS-F-serratus_M_contig1013:124347..1246651622928811.126121-CDS-F-serratus_M_contig1013:124347..124665Fucus serratus maleCDSF-serratus_M_contig1013 124348..124665 +
1690962582.8900914-CDS-F-serratus_M_contig1013:124347..1246651690962582.8900914-CDS-F-serratus_M_contig1013:124347..124665Fucus serratus maleCDSF-serratus_M_contig1013 124348..124665 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1013.217.1prot_F-serratus_M_contig1013.217.1Fucus serratus malepolypeptideF-serratus_M_contig1013 124348..124665 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1013.217.1

>prot_F-serratus_M_contig1013.217.1 ID=prot_F-serratus_M_contig1013.217.1|Name=mRNA_F-serratus_M_contig1013.217.1|organism=Fucus serratus male|type=polypeptide|length=106bp
MTRFYSSATAVGSVSVVFGGKSSSSMYCGSGDRGGSGALAFTTHPRGACQ
RSLMEGGDALGDIFSRMGLRTRYSVGSICARRRCSSGSWASKLVTSPCEE
QLLLRR
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mRNA from alignment at F-serratus_M_contig1013:124335..124665+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1013.217.1 ID=mRNA_F-serratus_M_contig1013.217.1|Name=mRNA_F-serratus_M_contig1013.217.1|organism=Fucus serratus male|type=mRNA|length=331bp|location=Sequence derived from alignment at F-serratus_M_contig1013:124335..124665+ (Fucus serratus male)
GCGGAACGAGCCCATGACTCGATTCTACTCCTCAGCTACGGCTGTTGGTT
CGGTGAGTGTGGTCTTTGGTGGAAAATCGTCGTCGTCTATGTACTGCGGT
AGTGGCGACAGAGGCGGAAGCGGCGCTCTCGCGTTCACAACACACCCTCG
CGGAGCATGTCAACGCTCGCTAATGGAGGGTGGCGATGCACTCGGCGACA
TATTTTCGCGAATGGGCCTTAGAACCCGCTATTCCGTGGGAAGCATCTGT
GCCAGGCGGCGGTGTTCGTCGGGAAGCTGGGCGTCGAAGTTGGTGACATC
ACCCTGTGAGGAGCAGCTTCTGCTGCGGCGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1013:124335..124665+

>mRNA_F-serratus_M_contig1013.217.1 ID=mRNA_F-serratus_M_contig1013.217.1|Name=mRNA_F-serratus_M_contig1013.217.1|organism=Fucus serratus male|type=CDS|length=636bp|location=Sequence derived from alignment at F-serratus_M_contig1013:124335..124665+ (Fucus serratus male)
ATGACTCGATTCTACTCCTCAGCTACGGCTGTTGGTTCGGTGAGTGTGGT
CTTTGGTGGAAAATCGTCGTCGTCTATGTACTGCGGTAGTGGCGACAGAG
GCGGAAGCGGCGCTCTCGCGTTCACAACACACCCTCGCGGAGCATGTCAA
CGCTCGCTAATGGAGGGTGGCGATGCACTCGGCGACATATTTTCGCGAAT
GGGCCTTAGAACCCGCTATTCCGTGGGAAGCATCTGTGCCAGGCGGCGGT
GTTCGTCGGGAAGCTGGGCGTCGAAGTTGGTGACATCACCCTGTGAGGAG
CAGCTTCTGCTGCGGCGCATGACTCGATTCTACTCCTCAGCTACGGCTGT
TGGTTCGGTGAGTGTGGTCTTTGGTGGAAAATCGTCGTCGTCTATGTACT
GCGGTAGTGGCGACAGAGGCGGAAGCGGCGCTCTCGCGTTCACAACACAC
CCTCGCGGAGCATGTCAACGCTCGCTAATGGAGGGTGGCGATGCACTCGG
CGACATATTTTCGCGAATGGGCCTTAGAACCCGCTATTCCGTGGGAAGCA
TCTGTGCCAGGCGGCGGTGTTCGTCGGGAAGCTGGGCGTCGAAGTTGGTG
ACATCACCCTGTGAGGAGCAGCTTCTGCTGCGGCGC
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