mRNA_F-serratus_M_contig1010.212.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1010.212.1
Unique NamemRNA_F-serratus_M_contig1010.212.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1010.212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1010contigF-serratus_M_contig1010:295839..296411 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size573
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1010.212.1prot_F-serratus_M_contig1010.212.1Fucus serratus malepolypeptideF-serratus_M_contig1010 295880..296203 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928808.5184584-UTR-F-serratus_M_contig1010:295838..2958791622928808.5184584-UTR-F-serratus_M_contig1010:295838..295879Fucus serratus maleUTRF-serratus_M_contig1010 295839..295879 +
1690962581.7846458-UTR-F-serratus_M_contig1010:295838..2958791690962581.7846458-UTR-F-serratus_M_contig1010:295838..295879Fucus serratus maleUTRF-serratus_M_contig1010 295839..295879 +
1622928808.5394197-UTR-F-serratus_M_contig1010:296203..2964111622928808.5394197-UTR-F-serratus_M_contig1010:296203..296411Fucus serratus maleUTRF-serratus_M_contig1010 296204..296411 +
1690962581.8044431-UTR-F-serratus_M_contig1010:296203..2964111690962581.8044431-UTR-F-serratus_M_contig1010:296203..296411Fucus serratus maleUTRF-serratus_M_contig1010 296204..296411 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928808.529231-CDS-F-serratus_M_contig1010:295879..2962031622928808.529231-CDS-F-serratus_M_contig1010:295879..296203Fucus serratus maleCDSF-serratus_M_contig1010 295880..296203 +
1690962581.7950902-CDS-F-serratus_M_contig1010:295879..2962031690962581.7950902-CDS-F-serratus_M_contig1010:295879..296203Fucus serratus maleCDSF-serratus_M_contig1010 295880..296203 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1010.212.1

>prot_F-serratus_M_contig1010.212.1 ID=prot_F-serratus_M_contig1010.212.1|Name=mRNA_F-serratus_M_contig1010.212.1|organism=Fucus serratus male|type=polypeptide|length=108bp
MGLGATWGSGDGARAVLAGGDGARSFLQGPTAATWRHSSPEGAWEPASAG
GATGRSVTCDLWEGRGSPRMCRMYARCWRSAESMAAALARWRSSRSVATA
CRGRMTV*
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mRNA from alignment at F-serratus_M_contig1010:295839..296411+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1010.212.1 ID=mRNA_F-serratus_M_contig1010.212.1|Name=mRNA_F-serratus_M_contig1010.212.1|organism=Fucus serratus male|type=mRNA|length=573bp|location=Sequence derived from alignment at F-serratus_M_contig1010:295839..296411+ (Fucus serratus male)
GGCCGGTCTTGGCGAAGTGTACACGGGCGTCTGGTGGGACCATGGGGTTG
GGCGCCACCTGGGGAAGTGGGGACGGGGCTCGAGCGGTCCTCGCCGGTGG
TGACGGAGCCCGGTCCTTCCTGCAGGGGCCAACAGCCGCGACCTGGCGCC
ATTCGAGTCCCGAAGGGGCATGGGAGCCAGCGAGTGCGGGCGGAGCCACT
GGACGCTCGGTGACGTGTGATTTATGGGAGGGGCGTGGGTCGCCCCGGAT
GTGCCGGATGTACGCGAGGTGCTGGCGCTCGGCCGAGAGCATGGCCGCGG
CATTAGCCCGGTGGCGGTCCTCGAGGTCGGTCGCCACCGCCTGCAGGGGG
CGTATGACCGTCTGAAACTCTTCTTGGGCCAGCGCCATGGCGCGGAGGTC
CGCCTCTGAGGGGGCCGAGTCCTGCGCAGCCTCGGCGGCATCCAGGTTGG
CTCGCATGTCCGCAATGGAGACGGCTCGAAGCCGGGCCTGGAGGGATGGT
GCGAGCTCCTCCCAAGATCCGCGGAAGCAGGCGAGGTGAGCGGGGGGTGA
TCCACCGAGAGGGACCCGTGGTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1010:295839..296411+

>mRNA_F-serratus_M_contig1010.212.1 ID=mRNA_F-serratus_M_contig1010.212.1|Name=mRNA_F-serratus_M_contig1010.212.1|organism=Fucus serratus male|type=CDS|length=648bp|location=Sequence derived from alignment at F-serratus_M_contig1010:295839..296411+ (Fucus serratus male)
ATGGGGTTGGGCGCCACCTGGGGAAGTGGGGACGGGGCTCGAGCGGTCCT
CGCCGGTGGTGACGGAGCCCGGTCCTTCCTGCAGGGGCCAACAGCCGCGA
CCTGGCGCCATTCGAGTCCCGAAGGGGCATGGGAGCCAGCGAGTGCGGGC
GGAGCCACTGGACGCTCGGTGACGTGTGATTTATGGGAGGGGCGTGGGTC
GCCCCGGATGTGCCGGATGTACGCGAGGTGCTGGCGCTCGGCCGAGAGCA
TGGCCGCGGCATTAGCCCGGTGGCGGTCCTCGAGGTCGGTCGCCACCGCC
TGCAGGGGGCGTATGACCGTCTGAATGGGGTTGGGCGCCACCTGGGGAAG
TGGGGACGGGGCTCGAGCGGTCCTCGCCGGTGGTGACGGAGCCCGGTCCT
TCCTGCAGGGGCCAACAGCCGCGACCTGGCGCCATTCGAGTCCCGAAGGG
GCATGGGAGCCAGCGAGTGCGGGCGGAGCCACTGGACGCTCGGTGACGTG
TGATTTATGGGAGGGGCGTGGGTCGCCCCGGATGTGCCGGATGTACGCGA
GGTGCTGGCGCTCGGCCGAGAGCATGGCCGCGGCATTAGCCCGGTGGCGG
TCCTCGAGGTCGGTCGCCACCGCCTGCAGGGGGCGTATGACCGTCTGA
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