mRNA_F-serratus_M_contig101.203.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig101.203.1
Unique NamemRNA_F-serratus_M_contig101.203.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig101.203.1 vs. uniprot
Match: A0A6H5KGJ6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ6_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 2.110e-27
Identity = 55/96 (57.29%), Postives = 69/96 (71.88%), Query Frame = 3
Query:  111 GEEEEKSSQDDGHEVKRQRRVFQRPDYTQSPWAVMLRHEGLQDSTSRESKVFRRRFRIPHVFFLELVDLVKARKWFPTKEVDISGRMCIPVELKVL 398
            G+E E      G  VKR RRV  RPDY  S W  ML   GL++  SRE+K+FRRRFRIP+ FF EL++LVK +KWFP ++ D++GRMCIPVELKV+
Sbjct:   38 GDELEDEGLGGGSPVKRTRRVLPRPDYRASFWWRMLGETGLKEPVSREAKLFRRRFRIPYQFFTELMELVKKKKWFPMRKKDVAGRMCIPVELKVM 133          
BLAST of mRNA_F-serratus_M_contig101.203.1 vs. uniprot
Match: A0A6H5JRQ7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRQ7_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 3.840e-25
Identity = 59/104 (56.73%), Postives = 74/104 (71.15%), Query Frame = 3
Query:  156 KRQRRVFQRPDYTQSPWAVML-RHEGLQDSTSRESKVFRRRFRIPHVFFLELVDLVKARKW--FPTKEVDISGR---MCIPVELKVLSALQVLGRGNFFDDVSQ 449
            KR+R V  R DY   PWA ML + + LQD ++RE+K FRRRFR+P+ FFL LVD VKA  W  F T E ++ GR    CIPVE KVL+ L++LGRGN+FDDVS+
Sbjct:   50 KRRRTVRPRADYRTLPWARMLEKADLLQDPSTREAKQFRRRFRVPYPFFLSLVDEVKAGNWPGFTTDEFELGGRGTRRCIPVETKVLAVLRILGRGNYFDDVSE 153          
BLAST of mRNA_F-serratus_M_contig101.203.1 vs. uniprot
Match: A0A6H5JP98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP98_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 5.760e-24
Identity = 67/149 (44.97%), Postives = 92/149 (61.74%), Query Frame = 3
Query:   18 VAAVAAAVAAYRHRKQRIKNIAHSVLSLEYLGEEEEKSSQDDGHEVKRQRRVFQRPDYTQSPWAVMLRHEGLQDSTSRESKVFRRRFRIPHVFFLELVDLVKARKW--FPTKEVDISGR---MCIPVELKVLSALQVLGRGNFFDDVSQ 449
            +A ++ A AA  +++Q +      V SL  +  EEE    D     KR+  V  R DY      V+ + + LQD ++RE+K FRRRFR+P+ FFL LVD VKA KW  F T E ++ GR    CIPVE+KVL+ L++LGRGN+FDDVS+
Sbjct:   11 LAVLSLAFAALHYQQQLL------VASLRQMRREEEDGC-DGEPRPKRRLTVRPRADYALPRARVLEKADLLQDPSTREAKQFRRRFRVPYPFFLSLVDEVKAGKWPVFTTDEFELGGRGTRRCIPVEIKVLAVLRILGRGNYFDDVSE 152          
BLAST of mRNA_F-serratus_M_contig101.203.1 vs. uniprot
Match: A0A6H5K8I3_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8I3_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 7.630e-24
Identity = 59/104 (56.73%), Postives = 74/104 (71.15%), Query Frame = 3
Query:  156 KRQRRVFQRPDYTQSPWAVML-RHEGLQDSTSRESKVFRRRFRIPHVFFLELVDLVKARKW--FPTKEVDISGR---MCIPVELKVLSALQVLGRGNFFDDVSQ 449
            KR+R V  R DY   PWA ML + + LQD ++RE+K FRRRFR+P+ FFL LVD VKA  W  F T E ++ GR    CIPVE KVL+ L++LGRGN+FDDVS+
Sbjct:   50 KRRRTVRPRADYRTLPWARMLEKADLLQDPSTREAKQFRRRFRVPYPFFLSLVDEVKAGNWPGFTTDEFELGGRGTRRCIPVETKVLAVLRILGRGNYFDDVSE 153          
BLAST of mRNA_F-serratus_M_contig101.203.1 vs. uniprot
Match: A0A6H5KPT7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPT7_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.090e-22
Identity = 52/96 (54.17%), Postives = 65/96 (67.71%), Query Frame = 3
Query:  111 GEEEEKSSQDDGHEVKRQRRVFQRPDYTQSPWAVMLRHEGLQDSTSRESKVFRRRFRIPHVFFLELVDLVKARKWFPTKEVDISGRMCIPVELKVL 398
            G+E E      G  VKR RRV  RPDY  S W  ML   GL++  SRE K+FR RFRIP+ F  EL++LVK +K FP ++ D++GRMCIPVELKV+
Sbjct:   54 GDELEDEGLGGGSPVKRTRRVLPRPDYRASFWWRMLGETGLKEPASREVKLFRGRFRIPYQFLTELMELVKKKKRFPMRKKDVAGRMCIPVELKVM 149          
BLAST of mRNA_F-serratus_M_contig101.203.1 vs. uniprot
Match: A0A6H5JHC3_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHC3_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.180e-20
Identity = 54/106 (50.94%), Postives = 70/106 (66.04%), Query Frame = 3
Query:  153 VKRQRRVFQRPDYTQSPWAVMLRH--EGLQDSTSRESKVFRRRFRIPHVFFLELVDLVKARKW--FPTKEVDISGR---MCIPVELKVLSALQVLGRGNFFDDVSQ 449
             KR+R V+ RPDY  S WA+MLR   + L D T++++++FRRRFR+P+  FLELV  +K+  W  F T   D+ GR    CIPVELKVL      GRGNFFDD+ Q
Sbjct:   52 AKRKRTVYPRPDYHNSAWAIMLREKEDALADPTTKDARLFRRRFRMPYPIFLELVKEIKSAGWKGFTTDATDLGGRGTRPCIPVELKVL------GRGNFFDDIPQ 151          
BLAST of mRNA_F-serratus_M_contig101.203.1 vs. uniprot
Match: A0A6H5JV45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV45_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 7.210e-20
Identity = 53/101 (52.48%), Postives = 63/101 (62.38%), Query Frame = 3
Query:  165 RRVFQRPDYTQSPWAVML------RHEGLQDSTSRESKVFRRRFRIPHVFFLELVDLVKARKWFPTKEVDISGRMCIPVELKVLSALQVLGRGNFFDDVSQ 449
            R   +RPDY+ S W V L      R  G    +SRE+K FR  FR+PH FF   VDLV  R  FPT   D++GR C+P+ELKVL  LQVLGRGN F DV+Q
Sbjct:   33 RETRERPDYSSSAWGVRLANLESLRIAGRLVPSSREAKAFRSDFRVPHEFFRHFVDLV--RTVFPTATRDVAGRQCVPLELKVLGVLQVLGRGNCFADVAQ 131          
BLAST of mRNA_F-serratus_M_contig101.203.1 vs. uniprot
Match: A0A6H5KLF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLF8_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.280e-19
Identity = 59/116 (50.86%), Postives = 76/116 (65.52%), Query Frame = 3
Query:  120 EEKSSQDDGHEVKRQRRVFQRPDYTQSPWAVML-RHEGLQDSTSRESKVFRRRFRIPHVFFLELVDLVKARKW--FPTKEVDISGR---MCIPVELKVLSALQVLGRGNFFDDVSQ 449
            EE+   D+    K +R V  R D    PWA ML + + LQD ++RE+K FRRRFR+P+ FFL LVD VKA KW  F T E ++ GR    CIPVE+ VL   ++LGRGN+FDDVS+
Sbjct:    4 EEEDGCDEEPRPKCRRTVRPRADDRALPWARMLEKADLLQDPSTREAKQFRRRFRVPYPFFLSLVDGVKAGKWPGFTTNEFELGGRGTRRCIPVEIDVL---RILGRGNYFDDVSE 116          
BLAST of mRNA_F-serratus_M_contig101.203.1 vs. uniprot
Match: A0A6H5L0H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H2_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 6.340e-18
Identity = 52/105 (49.52%), Postives = 67/105 (63.81%), Query Frame = 3
Query:  150 EVKRQRRVFQRPDYTQSPWAVMLRH-EGLQDST-----SRESKVFRRRFRIPHVFFLELVDLVKARKWFPTKEVDISGRMCIPVELKVLSALQVLGRGNFFDDVS 446
            E  R R    RPDY +S W + L   E L+ S      SRE++ FR  FR+P+ FFLE V++V  R  FP +E D+ GR+C+P+ELKVL  LQVLGRGN F DV+
Sbjct:  126 EAIRTRESRPRPDYNKSAWGLRLAQMESLRCSHNLAQHSREARAFRADFRVPYEFFLEFVEMV--RPVFPAREHDVCGRLCVPLELKVLGVLQVLGRGNCFADVA 228          
BLAST of mRNA_F-serratus_M_contig101.203.1 vs. uniprot
Match: A0A7S0W0D1_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W0D1_9CRYP)

HSP 1 Score: 62.4 bits (150), Expect = 1.550e-8
Identity = 40/96 (41.67%), Postives = 52/96 (54.17%), Query Frame = 3
Query:  180 RPDYTQSPWAVMLR-----HEGLQDSTSRESKVFRRRFRIPHVFFLELVDLVKARKWFPTK-EVDISGRMCIPVELKVLSALQVLGRGNFFDDVSQ 449
            R D  +S W   L      H   +    RE + + RRFRIP+  F ELV +V+           D +GR C P+ELKVLSAL+VLGRG +FDD  +
Sbjct:   79 RGDPWESSWGKQLLRMREFHATEEGPPRREERTWLRRFRIPYPAFEELVGVVQRDLGLDNHARCDAAGRPCKPIELKVLSALRVLGRGCYFDDAEE 174          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig101.203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5KGJ6_9PHAE2.110e-2757.29Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRQ7_9PHAE3.840e-2556.73Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JP98_9PHAE5.760e-2444.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8I3_9PHAE7.630e-2456.73Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPT7_9PHAE1.090e-2254.17Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHC3_9PHAE1.180e-2050.94DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5JV45_9PHAE7.210e-2052.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLF8_9PHAE1.280e-1950.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0H2_9PHAE6.340e-1849.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0W0D1_9CRYP1.550e-841.67Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig101contigF-serratus_M_contig101:801070..802597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue3.5e-07
Seed eggNOG ortholog159749.K0T1Y8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Plant transposon protein
EggNOG OGs2E2RF@1,2S9YA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size449
Cds size444
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig101.203.1prot_F-serratus_M_contig101.203.1Fucus serratus malepolypeptideF-serratus_M_contig101 801070..802592 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928808.3189065-CDS-F-serratus_M_contig101:801069..8011261622928808.3189065-CDS-F-serratus_M_contig101:801069..801126Fucus serratus maleCDSF-serratus_M_contig101 801070..801126 -
1690962581.6698294-CDS-F-serratus_M_contig101:801069..8011261690962581.6698294-CDS-F-serratus_M_contig101:801069..801126Fucus serratus maleCDSF-serratus_M_contig101 801070..801126 -
1622928808.3315268-CDS-F-serratus_M_contig101:802205..8025921622928808.3315268-CDS-F-serratus_M_contig101:802205..802592Fucus serratus maleCDSF-serratus_M_contig101 802206..802592 -
1690962581.6808841-CDS-F-serratus_M_contig101:802205..8025921690962581.6808841-CDS-F-serratus_M_contig101:802205..802592Fucus serratus maleCDSF-serratus_M_contig101 802206..802592 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928808.3465242-UTR-F-serratus_M_contig101:802592..8025971622928808.3465242-UTR-F-serratus_M_contig101:802592..802597Fucus serratus maleUTRF-serratus_M_contig101 802593..802597 -
1690962581.6899333-UTR-F-serratus_M_contig101:802592..8025971690962581.6899333-UTR-F-serratus_M_contig101:802592..802597Fucus serratus maleUTRF-serratus_M_contig101 802593..802597 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig101.203.1

>prot_F-serratus_M_contig101.203.1 ID=prot_F-serratus_M_contig101.203.1|Name=mRNA_F-serratus_M_contig101.203.1|organism=Fucus serratus male|type=polypeptide|length=148bp
MDDCVAAVAAAVAAYRHRKQRIKNIAHSVLSLEYLGEEEEKSSQDDGHEV
KRQRRVFQRPDYTQSPWAVMLRHEGLQDSTSRESKVFRRRFRIPHVFFLE
LVDLVKARKWFPTKEVDISGRMCIPVELKVLSALQVLGRGNFFDDVSQ
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mRNA from alignment at F-serratus_M_contig101:801070..802597-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig101.203.1 ID=mRNA_F-serratus_M_contig101.203.1|Name=mRNA_F-serratus_M_contig101.203.1|organism=Fucus serratus male|type=mRNA|length=1528bp|location=Sequence derived from alignment at F-serratus_M_contig101:801070..802597- (Fucus serratus male)
CAGGCATGGATGATTGTGTTGCGGCGGTGGCGGCCGCAGTGGCAGCATAT CGCCATCGCAAGCAAAGGATCAAGAACATCGCTCATTCGGTACTCAGTCT GGAGTATCTCGGTGAGGAAGAGGAAAAAAGCTCCCAGGATGATGGCCATG AAGTCAAGCGCCAGCGGCGGGTGTTTCAGAGGCCGGACTACACGCAGTCT CCCTGGGCGGTGATGCTTCGGCACGAAGGCCTGCAGGACAGTACCTCGAG AGAGTCCAAAGTTTTTCGGAGGCGCTTCCGCATCCCGCATGTATTTTTCC TGGAGCTGGTGGATCTGGTCAAGGCGCGCAAGTGGTTCCCCACGAAGGAG GTAGACATCTCTGGCAGGATGTGCATCCCTGTGGAACTGAAGGTGAGAAG AGCATATGATAGCCTTTGCGACGTGAAGTACAGTTTCTTCCGTACAGATT GTGTTGGAGACCGCTTGCACAGCGCTGTTTACACGGCACGGTGCCGTCTG CCAGCTACATTGTGTGTGTTCGAGTCCCCTCGAAGATCTTCTGTTGTGCC ATGCCACATTAGTGCGTGTACAATCCACCTAATTTCAAAAACATTCCATA GAGGTACTACTTGGTTGGTGGTGTGTTGCGATTGGCAGCAAAATGTATCG CGACGTACTGGTAGAAGGTAAACATTGAACAGACTCTACGATAGACAACT GTACTCGGAGTACGTGCAGACGTGTATATAGCATTGAACAGACTCTACGG CAGAGAACAACTGTACGCGTAGTACGTGCAGACACGTAGGTTCCTCAGCC ATTGAGTCGATTTGTGGTACCTTTTTCTACGTTTTAGATACCTGTACCAA TACGGGCGGCACCCCCCCGGGCCTAAGCTGCGGTGCAGTTTGCGATAGGA GTACTTTTAGCAGTGTTCCAAGTACTGATGCAGGTTTCACGGCGTCTGCG GAATGCGGTGGATGCACTGTCTGTAGCTGCTGACTGTGCAGTAGCAGGGG TTCAGCATTGGCTTGGCTCACTCGTAATGCATCCTTCTAAGATAGTGTAA AGTGAATAGCGAACGTCTGGACACTGTCTGTAGCTGCTGGCTGTACAGCA ACAGAGGTTCAGCATTGGCTTGGCTCACTCGTAATACATCCTTCTAAGAT AGTGTAAAATGAAAAGCAAACGTCAGGAGATGGCAAGAATTGCAGCTTCG TAAGCCCTCTTTGAAGAAGTCCACACATCACGAATTCCCGCTAATGAAAT TTTTGCACGTACAACAAAGTAAGCATCGACCGGCGCCGCTGGGTTGTGCA GGAATTTGACAACCAGTTAAAATACATACCGTATTTTGAGAATGTATCCC GGTGACTGTCGGTTGTAAAAGTCGAGCGATGGCCGTGGTGACTAAACGTT GTTCTATCGCAAGGAACATCATTCTGATAACCACACTGCACGGCCATCAT ATTTTCCCTCGTATACTGCAGGTGCTGTCGGCCCTCCAGGTTCTCGGAAG GGGTAACTTCTTCGACGATGTGAGCCAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig101:801070..802597-

>mRNA_F-serratus_M_contig101.203.1 ID=mRNA_F-serratus_M_contig101.203.1|Name=mRNA_F-serratus_M_contig101.203.1|organism=Fucus serratus male|type=CDS|length=888bp|location=Sequence derived from alignment at F-serratus_M_contig101:801070..802597- (Fucus serratus male)
ATGGATGATTGTGTTGCGGCGGTGGCGGCCGCAGTGGCAGCATATCGCCA
TCGCAAGCAAAGGATCAAGAACATCGCTCATTCGGTACTCAGTCTGGAGT
ATCTCGGTGAGGAAGAGGAAAAAAGCTCCCAGGATGATGGCCATGAAGTC
AAGCGCCAGCGGCGGGTGTTTCAGAGGCCGGACTACACGCAGTCTCCCTG
GGCGGTGATGCTTCGGCACGAAGGCCTGCAGGACAGTACCTCGAGAGAGT
CCAAAGTTTTTCGGAGGCGCTTCCGCATCCCGCATGTATTTTTCCTGGAG
CTGGTGGATCTGGTCAAGGCGCGCAAGTGGTTCCCCACGAAGGAGGTAGA
CATCTCTGGCAGGATGTGCATCCCTGTGGAACTGAAGATGGATGATTGTG
TTGCGGCGGTGGCGGCCGCAGTGGCAGCATATCGCCATCGCAAGCAAAGG
ATCAAGAACATCGCTCATTCGGTACTCAGTCTGGAGTATCTCGGTGAGGA
AGAGGAAAAAAGCTCCCAGGATGATGGCCATGAAGTCAAGCGCCAGCGGC
GGGTGTTTCAGAGGCCGGACTACACGCAGTCTCCCTGGGCGGTGATGCTT
CGGCACGAAGGCCTGCAGGACAGTACCTCGAGAGAGTCCAAAGTTTTTCG
GAGGCGCTTCCGCATCCCGCATGTATTTTTCCTGGAGCTGGTGGATCTGG
TCAAGGCGCGCAAGTGGTTCCCCACGAAGGAGGTAGACATCTCTGGCAGG
ATGTGCATCCCTGTGGAACTGAAGGTGCTGTCGGCCCTCCAGGTTCTCGG
AAGGGGTAACTTCTTCGACGATGTGAGCCAGGTGCTGTCGGCCCTCCAGG
TTCTCGGAAGGGGTAACTTCTTCGACGATGTGAGCCAG
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