mRNA_F-serratus_M_contig101.202.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig101.202.1
Unique NamemRNA_F-serratus_M_contig101.202.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig101.202.1 vs. uniprot
Match: A0A6H5JHC3_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHC3_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 3.650e-39
Identity = 72/145 (49.66%), Postives = 96/145 (66.21%), Query Frame = 1 
Query:    4 TIAYQVTVDHTGRVLAVTEGFPGAQNDKTIIRYDAAVKSIREDPAYTEAVFHLRDATGSSVECKGAYLIVDNGYHKWRVTQEPTKYPLNKEETNYSKTLESVRKDVECFFGIVKGRFRILKLPALYQRKESIDNVFFTCCILHNM 438
            T+A++V  DH  R L V++ FPGA NDKTI+ +D  V+ I+ +    +  F L    GS  E +G YLIVD GYHK      P ++P+ ++E  + K LESVRKD+ECFFGI+KGRFRILK+P LY+    +D +F TCC LHNM
Sbjct:  233 TVAFEVVCDHKLRCLGVSKAFPGAMNDKTIVMFDEYVRRIKTE--CKDVPFTLLGEDGSEFEERGLYLIVDGGYHKC-----PVQFPVTQDELAFRKQLESVRKDIECFFGILKGRFRILKMPLLYRGIHKLDCIFQTCCALHNM 370
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BLAST of mRNA_F-serratus_M_contig101.202.1 vs. uniprot
Match: A0A6H5L0X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0X4_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 1.780e-38
Identity = 73/143 (51.05%), Postives = 96/143 (67.13%), Query Frame = 1 
Query:   13 YQVTVDHTGRVLAVTEGFPG-AQNDKTIIRYDAAVKSIREDPAYTEAVFHLRDATGSSVECKGAYLIVDNGYHKWRVTQEPTKYPLNKEETNYSKTLESVRKDVECFFGIVKGRFRILKLPALYQRKESIDNVFFTCCILHNM 438
            Y     +TG+     EGFP  A    TI+ +DAAV+ IR D  YTE  F + +  G++   KG YL+VDNGYHKW++  EP+KYPL++ +  +SK L+SVR+D     GI+KGRFRILKL   YQ +E ID+VFFTCCI+HNM
Sbjct:  244 YNQARSYTGK-----EGFPTIAYQVVTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGWYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLDSVRRDGSASDGILKGRFRILKLAMAYQSQERIDDVFFTCCIMHNM 381
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BLAST of mRNA_F-serratus_M_contig101.202.1 vs. uniprot
Match: A0A6H5JV45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV45_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 5.490e-38
Identity = 65/145 (44.83%), Postives = 96/145 (66.21%), Query Frame = 1 
Query:    4 TIAYQVTVDHTGRVLAVTEGFPGAQNDKTIIRYDAAVKSIREDPAYTEAVFHLRDATGSSVECKGAYLIVDNGYHKWRVTQEPTKYPLNKEETNYSKTLESVRKDVECFFGIVKGRFRILKLPALYQRKESIDNVFFTCCILHNM 438
            T+ Y+ + DH+GR+L+ T+GFPGA+NDKT+++ D +V  +RE+  +    F L D  G++ E  G +LIVD GYH+      P K   ++ +  +SK  ES+RKD+EC FG +KGRFR+ K   L+  +E IDN +FT CI+HNM
Sbjct:  213 TLVYEASCDHSGRILSSTKGFPGAENDKTVVKRDLSVLRMREEEPWASYKFVLFDLEGNTTEHTGGWLIVDGGYHRVPSLICPFKEYASEAQQEWSKRFESIRKDIECLFGRLKGRFRLFKTGILFGTREKIDNAWFTACIIHNM 357
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BLAST of mRNA_F-serratus_M_contig101.202.1 vs. uniprot
Match: A0A6U1EFP8_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A6U1EFP8_9CHLO)

HSP 1 Score: 141 bits (356), Expect = 7.400e-37
Identity = 65/145 (44.83%), Postives = 95/145 (65.52%), Query Frame = 1 
Query:    1 PTIAYQVTVDHTGRVLAVTEGFPGAQNDKTIIRYDAAVKSIREDPAYTEAVFHLRDATGSSVECKGAYLIVDNGYHKWRVTQEPTKYPLNKEETNYSKTLESVRKDVECFFGIVKGRFRILKLPALYQRKESIDNVFFTCCILHN 435
            PT+A+ V  DH GR++ +    PG +NDK + + D  +K+++ED  +T + F++R ATG  VE  GA+L+ D GYH+W  T    K+   +E   +SK +ESVRKD+E  FGI+K RFR+L+LP +   +E IDN F  CC+LHN
Sbjct:  282 PTLAWNVHCDHLGRIMHINGPHPGGRNDKNMAQLDDMIKAVKEDTLFTGSTFNMRSATGELVEHVGAWLLCDGGYHQWLCTICGFKHTSIRERFLWSKRMESVRKDIENTFGILKTRFRVLRLPFMLPNEEDIDNTFRVCCMLHN 426
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BLAST of mRNA_F-serratus_M_contig101.202.1 vs. uniprot
Match: A0A6H5KRU1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRU1_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 1.600e-36
Identity = 61/145 (42.07%), Postives = 91/145 (62.76%), Query Frame = 1 
Query:    4 TIAYQVTVDHTGRVLAVTEGFPGAQNDKTIIRYDAAVKSIREDPAYTEAVFHLRDATGSSVECKGAYLIVDNGYHKWRVTQEPTKYPLNKEETNYSKTLESVRKDVECFFGIVKGRFRILKLPALYQRKESIDNVFFTCCILHNM 438
            T+ ++   DH GR+LA T+G+PGA+NDKT+++ D +V+ +  +  +    + + D TG   E  G +LI + GYH+  +   P K   N  E  +SK LESVRKD+EC FG +KGRFR+ K   L+  +  ID+ +FT CI+HNM
Sbjct:   79 TVVFEAICDHAGRILASTKGYPGAENDKTVVQRDLSVRRVEGEEPWVSYKYEMYDETGDVTEHTGGWLIAEGGYHRVPLLICPFKVYANVAEQQWSKRLESVRKDIECLFGRLKGRFRLFKTGILFGDRTKIDDAWFTACIIHNM 223
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig101.202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JHC3_9PHAE3.650e-3949.66DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5L0X4_9PHAE1.780e-3851.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV45_9PHAE5.490e-3844.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6U1EFP8_9CHLO7.400e-3744.83Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A6H5KRU1_9PHAE1.600e-3642.07Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig101contigF-serratus_M_contig101:799973..800829 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score199.9
Seed ortholog evalue8.2e-49
Seed eggNOG ortholog2880.D7FSK2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Plant transposon protein
EggNOG OGs2E2RF@1,2S9YA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size439
Cds size438
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928808.2710917-CDS-F-serratus_M_contig101:799972..8001791622928808.2710917-CDS-F-serratus_M_contig101:799972..800179Fucus serratus maleCDSF-serratus_M_contig101 799973..800179 -
1690962581.650451-CDS-F-serratus_M_contig101:799972..8001791690962581.650451-CDS-F-serratus_M_contig101:799972..800179Fucus serratus maleCDSF-serratus_M_contig101 799973..800179 -
1622928808.2829762-CDS-F-serratus_M_contig101:800598..8008291622928808.2829762-CDS-F-serratus_M_contig101:800598..800829Fucus serratus maleCDSF-serratus_M_contig101 800599..800829 -
1690962581.6602201-CDS-F-serratus_M_contig101:800598..8008291690962581.6602201-CDS-F-serratus_M_contig101:800598..800829Fucus serratus maleCDSF-serratus_M_contig101 800599..800829 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig101.202.1prot_F-serratus_M_contig101.202.1Fucus serratus malepolypeptideF-serratus_M_contig101 799973..800829 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig101.202.1

>prot_F-serratus_M_contig101.202.1 ID=prot_F-serratus_M_contig101.202.1|Name=mRNA_F-serratus_M_contig101.202.1|organism=Fucus serratus male|type=polypeptide|length=146bp
PTIAYQVTVDHTGRVLAVTEGFPGAQNDKTIIRYDAAVKSIREDPAYTEA
VFHLRDATGSSVECKGAYLIVDNGYHKWRVTQEPTKYPLNKEETNYSKTL
ESVRKDVECFFGIVKGRFRILKLPALYQRKESIDNVFFTCCILHNM
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mRNA from alignment at F-serratus_M_contig101:799973..800829-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig101.202.1 ID=mRNA_F-serratus_M_contig101.202.1|Name=mRNA_F-serratus_M_contig101.202.1|organism=Fucus serratus male|type=mRNA|length=857bp|location=Sequence derived from alignment at F-serratus_M_contig101:799973..800829- (Fucus serratus male)
CCGACGATCGCTTACCAGGTGACAGTTGACCACACCGGCCGTGTCCTTGC
GGTTACGGAAGGCTTCCCCGGAGCTCAAAACGATAAAACGATTATTCGCT
ACGACGCTGCCGTCAAAAGCATTCGGGAGGACCCGGCTTACACCGAGGCG
GTGTTCCACCTGAGGGACGCGACGGGGAGTTCCGTGGAGTGTAAAGGCGC
CTACCTGATTGTCGACAACGGCTACCACAAGGTGAGGAAATAATGAAGAA
CTTCGAACGCGTCACGAGAAAGATACAGCTTGAAGGAACAAGTCATTGTA
TTTTTCTTGTAGGTTTGGTCCAAACAGGTGCAACAACAAATGCTGCGTAA
AATCACCCGGTCACGGCTTCATGTGGTCATATCGTACCACAATTTGATCC
TTGTCGAACAAGCGTTAGTTTTCTGTAAATGTTTGTTTCCTCTTGATACG
TTCGATGCCACTTTTCGTTGTATGGTATGTTATCTTGTGTTTACCGTGGT
TCGATTTCTAGTGGGTCGCTTCAACGTGAAGAACTACTGGACTCGTGTAG
TCTAGCCAGGAATGTAACTATTCAGCGGCCTCAAGGCTGACACCGCCTCG
CCCTTTCTCGACCCTTTGATGCTCACCATATTTTACTACGTATACCGTAG
TGGCGGGTTACCCAAGAACCCACCAAGTACCCGCTCAACAAGGAGGAAAC
CAATTACAGCAAGACGCTGGAGAGTGTACGCAAGGATGTCGAGTGCTTCT
TCGGAATTGTTAAAGGGCGTTTCCGGATCCTCAAGCTCCCCGCTCTCTAC
CAGAGGAAAGAGTCGATCGACAATGTGTTCTTCACGTGCTGTATTTTGCA
CAACATG
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Coding sequence (CDS) from alignment at F-serratus_M_contig101:799973..800829-

>mRNA_F-serratus_M_contig101.202.1 ID=mRNA_F-serratus_M_contig101.202.1|Name=mRNA_F-serratus_M_contig101.202.1|organism=Fucus serratus male|type=CDS|length=876bp|location=Sequence derived from alignment at F-serratus_M_contig101:799973..800829- (Fucus serratus male)
CCGACGATCGCTTACCAGGTGACAGTTGACCACACCGGCCGTGTCCTTGC
GGTTACGGAAGGCTTCCCCGGAGCTCAAAACGATAAAACGATTATTCGCT
ACGACGCTGCCGTCAAAAGCATTCGGGAGGACCCGGCTTACACCGAGGCG
GTGTTCCACCTGAGGGACGCGACGGGGAGTTCCGTGGAGTGTAAAGGCGC
CTACCTGATTGTCGACAACGGCTACCACAAGCCGACGATCGCTTACCAGG
TGACAGTTGACCACACCGGCCGTGTCCTTGCGGTTACGGAAGGCTTCCCC
GGAGCTCAAAACGATAAAACGATTATTCGCTACGACGCTGCCGTCAAAAG
CATTCGGGAGGACCCGGCTTACACCGAGGCGGTGTTCCACCTGAGGGACG
CGACGGGGAGTTCCGTGGAGTGTAAAGGCGCCTACCTGATTGTCGACAAC
GGCTACCACAAGTGGCGGGTTACCCAAGAACCCACCAAGTACCCGCTCAA
CAAGGAGGAAACCAATTACAGCAAGACGCTGGAGAGTGTACGCAAGGATG
TCGAGTGCTTCTTCGGAATTGTTAAAGGGCGTTTCCGGATCCTCAAGCTC
CCCGCTCTCTACCAGAGGAAAGAGTCGATCGACAATGTGTTCTTCACGTG
CTGTATTTTGCACAACATGTGGCGGGTTACCCAAGAACCCACCAAGTACC
CGCTCAACAAGGAGGAAACCAATTACAGCAAGACGCTGGAGAGTGTACGC
AAGGATGTCGAGTGCTTCTTCGGAATTGTTAAAGGGCGTTTCCGGATCCT
CAAGCTCCCCGCTCTCTACCAGAGGAAAGAGTCGATCGACAATGTGTTCT
TCACGTGCTGTATTTTGCACAACATG
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