mRNA_F-serratus_M_contig101.202.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig101.202.1
Unique NamemRNA_F-serratus_M_contig101.202.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig101.202.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 3.450e-50
Identity = 85/146 (58.22%), Postives = 102/146 (69.86%), Query Frame = 1
Query:    1 PTIAYQVTVDHTGRVLAVTEGFPGAQNDKTIIRYDAAVKSIREDPAYTEAVFHLRDATGSSVECKGAYLIVDNGYHKWRVTQEPTKYPLNKEETNYSKTLESVRKDVECFFGIVKGRFRILKLPALYQRKESIDNVFFTCCILHNM 438
            PTIAY+VTVDH GR LAVT GF G  NDKT IRYD+ V  IR +  YTE  + LR   G+    +G +LIVDNGY++            + E+T +S+ LESVRKDVECFFGI+KGRFRILKL   Y ++E IDN+FFTCCILHNM
Sbjct:  232 PTIAYEVTVDHAGRALAVTNGFAGGTNDKTTIRYDSGVNKIRTESQYTEREYKLRKVNGTERTRRGCFLIVDNGYYE------------SNEDTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNM 365          
BLAST of mRNA_F-serratus_M_contig101.202.1 vs. uniprot
Match: A0A6H5KEB6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB6_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 5.380e-50
Identity = 95/171 (55.56%), Postives = 112/171 (65.50%), Query Frame = 1
Query:    1 PTIAYQVTVDHTGRVLAVTEGFPGAQNDKTIIRYDAAVKSIREDPAYTEAVFHLRDATGSSVECKGAYLIVDNG----------YHK--------------WRVTQ-EPTKYPLNKEETNYSKTLESVRKDVECFFGIVKGRFRILKLPALYQRKESIDNVFFTCCILHNM 438
            PTIA +VTVDH GR LAVT GF GA NDKTIIRYD+ V  IR +  YTE  + LR A G+    +G +LIVDNG          +HK              W VT   P+KYP + E+T +S+ LESVRKDVECFFGI+KGRFRILKL   Y ++E IDN+FFTCCILHNM
Sbjct:  313 PTIACEVTVDHAGRALAVTNGFTGATNDKTIIRYDSGVNKIRTESQYTEREYKLRKANGTERTRRGCFLIVDNGMSVPKDLCVVHHKNIVAKLPSSERVLIWWVTLIAPSKYPQSNEDTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNM 483          
BLAST of mRNA_F-serratus_M_contig101.202.1 vs. uniprot
Match: A0A6H5KZ66_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ66_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 1.430e-49
Identity = 89/146 (60.96%), Postives = 99/146 (67.81%), Query Frame = 1
Query:    1 PTIAYQVTVDHTGRVLAVTEGFPGAQNDKTIIRYDAAVKSIREDPAYTEAVFHLRDATGSSVECKGAYLIVDNGYHKWRVTQEPTKYPLNKEETNYSKTLESVRKDVECFFGIVKGRFRILKLPALYQRKESIDNVFFTCCILHNM 438
            P+IAYQ  VDHTGRVLAVT+GFPGA NDKTIIRYD AV  IR DP YTE V  L D  G   E KG Y IVDNGY+K  +            E+ +SK  ESVRKDVECF GI+ GRF+ILKL   +Q K  IDN+F TCC LHNM
Sbjct:   36 PSIAYQAIVDHTGRVLAVTKGFPGAMNDKTIIRYDTAVAMIRRDPVYTEKVNTLFDENGRPFERKGNYSIVDNGYNKTDM------------ESKWSKAQESVRKDVECF-GILMGRFKILKLGIFFQDKNVIDNLFVTCCTLHNM 168          
BLAST of mRNA_F-serratus_M_contig101.202.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 7.440e-49
Identity = 85/146 (58.22%), Postives = 99/146 (67.81%), Query Frame = 1
Query:    1 PTIAYQVTVDHTGRVLAVTEGFPGAQNDKTIIRYDAAVKSIREDPAYTEAVFHLRDATGSSVECKGAYLIVDNGYHKWRVTQEPTKYPLNKEETNYSKTLESVRKDVECFFGIVKGRFRILKLPALYQRKESIDNVFFTCCILHNM 438
            PTIAY VTVDH GR LAVT GF GA NDKTIIRYD+ V  IR    YTE  + LR A G+    +G +LIVDNGYH+W     P+KYP   E+T +S+ LESVRKDV CF        RILKL   Y ++E +DN+FFTCCILHNM
Sbjct:  136 PTIAYDVTVDHDGRDLAVTNGFTGATNDKTIIRYDSGVNKIRTASQYTEREYKLRKANGTKRMRRGCFLIVDNGYHEWVTLIAPSKYPQRNEDTAFSRDLESVRKDVGCF--------RILKLRMPYHKREYVDNIFFTCCILHNM 273          
BLAST of mRNA_F-serratus_M_contig101.202.1 vs. uniprot
Match: A0A6H5K8I3_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8I3_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 1.070e-45
Identity = 76/145 (52.41%), Postives = 100/145 (68.97%), Query Frame = 1
Query:    4 TIAYQVTVDHTGRVLAVTEGFPGAQNDKTIIRYDAAVKSIREDPAYTEAVFHLRDATGSSVECKGAYLIVDNGYHKWRVTQEPTKYPLNKEETNYSKTLESVRKDVECFFGIVKGRFRILKLPALYQRKESIDNVFFTCCILHNM 438
            T+ + V V H  RVL+ T GFPGAQNDKTII++D    ++R    Y +  + L+   G+ ++ KG +LIVD GYH W+  Q P + P NK E+ + + LESVRKD EC FG+VKGRFRI K+  LY++KE IDN+FFTC ILHNM
Sbjct:  235 TLVFNVAVSHDMRVLSCTRGFPGAQNDKTIIKFDKFAMAVRNG-WYKDVEYTLKGEDGADIKEKGPWLIVDGGYHNWKQLQSPIRAPSNKAESGFKRQLESVRKDSECCFGVVKGRFRICKMQFLYRKKERIDNIFFTCIILHNM 378          
BLAST of mRNA_F-serratus_M_contig101.202.1 vs. uniprot
Match: A0A6H5K604_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K604_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 5.480e-44
Identity = 70/146 (47.95%), Postives = 102/146 (69.86%), Query Frame = 1
Query:    1 PTIAYQVTVDHTGRVLAVTEGFPGAQNDKTIIRYDAAVKSIREDPAYTEAVFHLRDATGSSVECKGAYLIVDNGYHKWRVTQEPTKYPLNKEETNYSKTLESVRKDVECFFGIVKGRFRILKLPALYQRKESIDNVFFTCCILHNM 438
            PT+  + T DHTGR++A T+ +PG++NDKTII+ D ++  IR++  ++   + L +A GS  E KGA+L+VD GY K  +   P K+    EE ++S+ LES+RKD+EC +G VKGRFR+ K   LY+ ++SIDN +FT CILHNM
Sbjct:   78 PTVVVEATCDHTGRIIAATKSYPGSENDKTIIQRDKSIWRIRDEEPWSSLKYKLYNADGSETEYKGAWLVVDGGYQKIPLLIPPIKHHATVEEHDWSRRLESMRKDIECCYGRVKGRFRLFKAGILYKTRDSIDNPWFTACILHNM 223          
BLAST of mRNA_F-serratus_M_contig101.202.1 vs. uniprot
Match: A0A6H5KLF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLF8_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 2.280e-43
Identity = 73/145 (50.34%), Postives = 94/145 (64.83%), Query Frame = 1
Query:    4 TIAYQVTVDHTGRVLAVTEGFPGAQNDKTIIRYDAAVKSIREDPAYTEAVFHLRDATGSSVECKGAYLIVDNGYHKWRVTQEPTKYPLNKEETNYSKTLESVRKDVECFFGIVKGRFRILKLPALYQRKESIDNVFFTCCILHNM 438
            T+ Y V V H  RVL+ T GFPGAQNDKTI+++D     +R    Y +  + L+   G  ++ KG +LIV  GYH W+  Q P + P  K E+ + + LE VRKD EC FG+VKGRFRI K+  LY++KE IDN FFTC ILHNM
Sbjct:  198 TLVYNVAVSHDMRVLSCTRGFPGAQNDKTIVKFDKFATEVRNG-WYKDVEYTLKGEDGGDIKEKGPWLIVGGGYHNWKQLQSPIRVPSTKAESGFKRQLEGVRKDSECCFGVVKGRFRICKMQFLYRKKERIDNTFFTCMILHNM 341          
BLAST of mRNA_F-serratus_M_contig101.202.1 vs. uniprot
Match: A0A6H5JHB4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHB4_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 2.230e-41
Identity = 68/133 (51.13%), Postives = 88/133 (66.17%), Query Frame = 1
Query:   40 RVLAVTEGFPGAQNDKTIIRYDAAVKSIREDPAYTEAVFHLRDATGSSVECKGAYLIVDNGYHKWRVTQEPTKYPLNKEETNYSKTLESVRKDVECFFGIVKGRFRILKLPALYQRKESIDNVFFTCCILHNM 438
            RVL+ T GF GAQNDKTI+++D     +R    Y +  + L+   G  ++ KG +LIVD GYH W+  Q P + P  K E+ + + LE VRKD EC FG+VKGRFRI K+  LY++KE IDN FFTC ILHNM
Sbjct:    2 RVLSCTRGFHGAQNDKTIVKFDKFATEVRNG-WYKDVEYTLKGEDGGDIKEKGPWLIVDGGYHNWKQLQSPIRVPSTKAESGFKRQLEGVRKDSECCFGVVKGRFRICKMQFLYRKKERIDNTFFTCMILHNM 133          
BLAST of mRNA_F-serratus_M_contig101.202.1 vs. uniprot
Match: A0A6H5JTS2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTS2_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 1.410e-40
Identity = 78/158 (49.37%), Postives = 98/158 (62.03%), Query Frame = 1
Query:    1 PTIAYQVTVDHTGRVLAVTEGFPGAQNDKTIIRYDAAVKSIREDPAYTEAVFHLRDATGSSVECKGAYLIVDNG------------YHKWRVTQEPTKYPLNKEETNYSKTLESVRKDVECFFGIVKGRFRILKLPALYQRKESIDNVFFTCCILHNM 438
            PTIAYQVTVDH GR +AVTEGF G+ NDKTI  +DAAV+ IR D  YT+  F + +  G++   KG YL+VDNG            +  W++  EP+K PL++ +  +SK LES             GR R LKL  +YQ +E IDNVFFTCCILHNM
Sbjct:  173 PTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIFCWDAAVEKIRTDKQYTDKTFDVYNEDGTTTTLKGCYLLVDNGTEPVFAFHLSVVFFHWQILIEPSKNPLSENDLLFSKRLES-------------GRVRTLKLAMVYQSQERIDNVFFTCCILHNM 317          
BLAST of mRNA_F-serratus_M_contig101.202.1 vs. uniprot
Match: A0A6H5K872_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K872_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 4.210e-40
Identity = 75/146 (51.37%), Postives = 88/146 (60.27%), Query Frame = 1
Query:    1 PTIAYQVTVDHTGRVLAVTEGFPGAQNDKTIIRYDAAVKSIREDPAYTEAVFHLRDATGSSVECKGAYLIVDNGYHKWRVTQEPTKYPLNKEETNYSKTLESVRKDVECFFGIVKGRFRILKLPALYQRKESIDNVFFTCCILHNM 438
            PTIAY+VTVDH  R LAVT GF GA NDKT+I YD+ V  IR +  YTE  + LR A G+    +G + IVDNGYH+                            DVECFFGI+KGRFRILKL   Y ++E IDN+FFTCCI HNM
Sbjct:  197 PTIAYEVTVDHASRALAVTNGFTGAMNDKTVIWYDSGVNDIRTESQYTERQYKLRKANGTERTRRGCFSIVDNGYHE----------------------------DVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCIRHNM 314          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig101.202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSI7_9PHAE3.450e-5058.22DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5KEB6_9PHAE5.380e-5055.56DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KZ66_9PHAE1.430e-4960.96DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K796_9PHAE7.440e-4958.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8I3_9PHAE1.070e-4552.41Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K604_9PHAE5.480e-4447.95Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLF8_9PHAE2.280e-4350.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHB4_9PHAE2.230e-4151.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTS2_9PHAE1.410e-4049.37DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K872_9PHAE4.210e-4051.37DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig101contigF-serratus_M_contig101:799973..800829 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score199.9
Seed ortholog evalue8.2e-49
Seed eggNOG ortholog2880.D7FSK2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Plant transposon protein
EggNOG OGs2E2RF@1,2S9YA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size439
Cds size438
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928808.2710917-CDS-F-serratus_M_contig101:799972..8001791622928808.2710917-CDS-F-serratus_M_contig101:799972..800179Fucus serratus maleCDSF-serratus_M_contig101 799973..800179 -
1690962581.650451-CDS-F-serratus_M_contig101:799972..8001791690962581.650451-CDS-F-serratus_M_contig101:799972..800179Fucus serratus maleCDSF-serratus_M_contig101 799973..800179 -
1622928808.2829762-CDS-F-serratus_M_contig101:800598..8008291622928808.2829762-CDS-F-serratus_M_contig101:800598..800829Fucus serratus maleCDSF-serratus_M_contig101 800599..800829 -
1690962581.6602201-CDS-F-serratus_M_contig101:800598..8008291690962581.6602201-CDS-F-serratus_M_contig101:800598..800829Fucus serratus maleCDSF-serratus_M_contig101 800599..800829 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig101.202.1prot_F-serratus_M_contig101.202.1Fucus serratus malepolypeptideF-serratus_M_contig101 799973..800829 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig101.202.1

>prot_F-serratus_M_contig101.202.1 ID=prot_F-serratus_M_contig101.202.1|Name=mRNA_F-serratus_M_contig101.202.1|organism=Fucus serratus male|type=polypeptide|length=146bp
PTIAYQVTVDHTGRVLAVTEGFPGAQNDKTIIRYDAAVKSIREDPAYTEA
VFHLRDATGSSVECKGAYLIVDNGYHKWRVTQEPTKYPLNKEETNYSKTL
ESVRKDVECFFGIVKGRFRILKLPALYQRKESIDNVFFTCCILHNM
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mRNA from alignment at F-serratus_M_contig101:799973..800829-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig101.202.1 ID=mRNA_F-serratus_M_contig101.202.1|Name=mRNA_F-serratus_M_contig101.202.1|organism=Fucus serratus male|type=mRNA|length=857bp|location=Sequence derived from alignment at F-serratus_M_contig101:799973..800829- (Fucus serratus male)
CCGACGATCGCTTACCAGGTGACAGTTGACCACACCGGCCGTGTCCTTGC GGTTACGGAAGGCTTCCCCGGAGCTCAAAACGATAAAACGATTATTCGCT ACGACGCTGCCGTCAAAAGCATTCGGGAGGACCCGGCTTACACCGAGGCG GTGTTCCACCTGAGGGACGCGACGGGGAGTTCCGTGGAGTGTAAAGGCGC CTACCTGATTGTCGACAACGGCTACCACAAGGTGAGGAAATAATGAAGAA CTTCGAACGCGTCACGAGAAAGATACAGCTTGAAGGAACAAGTCATTGTA TTTTTCTTGTAGGTTTGGTCCAAACAGGTGCAACAACAAATGCTGCGTAA AATCACCCGGTCACGGCTTCATGTGGTCATATCGTACCACAATTTGATCC TTGTCGAACAAGCGTTAGTTTTCTGTAAATGTTTGTTTCCTCTTGATACG TTCGATGCCACTTTTCGTTGTATGGTATGTTATCTTGTGTTTACCGTGGT TCGATTTCTAGTGGGTCGCTTCAACGTGAAGAACTACTGGACTCGTGTAG TCTAGCCAGGAATGTAACTATTCAGCGGCCTCAAGGCTGACACCGCCTCG CCCTTTCTCGACCCTTTGATGCTCACCATATTTTACTACGTATACCGTAG TGGCGGGTTACCCAAGAACCCACCAAGTACCCGCTCAACAAGGAGGAAAC CAATTACAGCAAGACGCTGGAGAGTGTACGCAAGGATGTCGAGTGCTTCT TCGGAATTGTTAAAGGGCGTTTCCGGATCCTCAAGCTCCCCGCTCTCTAC CAGAGGAAAGAGTCGATCGACAATGTGTTCTTCACGTGCTGTATTTTGCA CAACATG
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Coding sequence (CDS) from alignment at F-serratus_M_contig101:799973..800829-

>mRNA_F-serratus_M_contig101.202.1 ID=mRNA_F-serratus_M_contig101.202.1|Name=mRNA_F-serratus_M_contig101.202.1|organism=Fucus serratus male|type=CDS|length=876bp|location=Sequence derived from alignment at F-serratus_M_contig101:799973..800829- (Fucus serratus male)
CCGACGATCGCTTACCAGGTGACAGTTGACCACACCGGCCGTGTCCTTGC
GGTTACGGAAGGCTTCCCCGGAGCTCAAAACGATAAAACGATTATTCGCT
ACGACGCTGCCGTCAAAAGCATTCGGGAGGACCCGGCTTACACCGAGGCG
GTGTTCCACCTGAGGGACGCGACGGGGAGTTCCGTGGAGTGTAAAGGCGC
CTACCTGATTGTCGACAACGGCTACCACAAGCCGACGATCGCTTACCAGG
TGACAGTTGACCACACCGGCCGTGTCCTTGCGGTTACGGAAGGCTTCCCC
GGAGCTCAAAACGATAAAACGATTATTCGCTACGACGCTGCCGTCAAAAG
CATTCGGGAGGACCCGGCTTACACCGAGGCGGTGTTCCACCTGAGGGACG
CGACGGGGAGTTCCGTGGAGTGTAAAGGCGCCTACCTGATTGTCGACAAC
GGCTACCACAAGTGGCGGGTTACCCAAGAACCCACCAAGTACCCGCTCAA
CAAGGAGGAAACCAATTACAGCAAGACGCTGGAGAGTGTACGCAAGGATG
TCGAGTGCTTCTTCGGAATTGTTAAAGGGCGTTTCCGGATCCTCAAGCTC
CCCGCTCTCTACCAGAGGAAAGAGTCGATCGACAATGTGTTCTTCACGTG
CTGTATTTTGCACAACATGTGGCGGGTTACCCAAGAACCCACCAAGTACC
CGCTCAACAAGGAGGAAACCAATTACAGCAAGACGCTGGAGAGTGTACGC
AAGGATGTCGAGTGCTTCTTCGGAATTGTTAAAGGGCGTTTCCGGATCCT
CAAGCTCCCCGCTCTCTACCAGAGGAAAGAGTCGATCGACAATGTGTTCT
TCACGTGCTGTATTTTGCACAACATG
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