mRNA_F-serratus_M_contig101.202.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig101.202.1
Unique NamemRNA_F-serratus_M_contig101.202.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig101.202.1 vs. uniprot
Match: A0A6H5JTC6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC6_9PHAE)

HSP 1 Score: 206 bits (525), Expect = 7.410e-65
Identity = 97/146 (66.44%), Postives = 114/146 (78.08%), Query Frame = 1
Query:    1 PTIAYQVTVDHTGRVLAVTEGFPGAQNDKTIIRYDAAVKSIREDPAYTEAVFHLRDATGSSVECKGAYLIVDNGYHKWRVTQEPTKYPLNKEETNYSKTLESVRKDVECFFGIVKGRFRILKLPALYQRKESIDNVFFTCCILHNM 438
            PT+AYQVTVDHT RVLAVT GF G+ NDK+IIRYD AV  IREDP Y+E  F + +A G+  + KG YL+VDNGYHKW     P+KYP+++ +  +SK LESVRKDVECFFGIVKG FRILKL   Y ++E IDNVFFTCCILHNM
Sbjct:   17 PTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGLFRILKLSIPYHKQEDIDNVFFTCCILHNM 162          
BLAST of mRNA_F-serratus_M_contig101.202.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 4.580e-63
Identity = 98/146 (67.12%), Postives = 115/146 (78.77%), Query Frame = 1
Query:    1 PTIAYQVTVDHTGRVLAVTEGFPGAQNDKTIIRYDAAVKSIREDPAYTEAVFHLRDATGSSVECKGAYLIVDNGYHKWRVTQEPTKYPLNKEETNYSKTLESVRKDVECFFGIVKGRFRILKLPALYQRKESIDNVFFTCCILHNM 438
            PT+AYQVTVDHT RVLAVT GF G+ NDK+IIRYD AV  IREDP Y+E  F + +A G+  + KG YL+VDNGYHKW     P+KYP+++ +  +SK LESVRKDVECFFGIVKGRFRILKL   Y ++E IDNVFFTCCILHNM
Sbjct:  258 PTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNM 403          
BLAST of mRNA_F-serratus_M_contig101.202.1 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE)

HSP 1 Score: 204 bits (519), Expect = 7.980e-63
Identity = 95/146 (65.07%), Postives = 113/146 (77.40%), Query Frame = 1
Query:    1 PTIAYQVTVDHTGRVLAVTEGFPGAQNDKTIIRYDAAVKSIREDPAYTEAVFHLRDATGSSVECKGAYLIVDNGYHKWRVTQEPTKYPLNKEETNYSKTLESVRKDVECFFGIVKGRFRILKLPALYQRKESIDNVFFTCCILHNM 438
            PTIAYQVTVDH  R +AVTEGF G+ NDKTI+ +DAAV  IR D  YTE  F L +  G++   KG Y + DNGYHKW++  EP+KYPL++++  +SK LESVRKDVECFFGI+KGRFRILKL   YQ +E IDNVFFTCCILHNM
Sbjct:  105 PTIAYQVTVDHASRAIAVTEGFTGSTNDKTIVCWDAAVDKIRTDKQYTEKTFDLYNEDGTTTTLKGCYFLDDNGYHKWQILIEPSKYPLSEDDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNM 250          
BLAST of mRNA_F-serratus_M_contig101.202.1 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI)

HSP 1 Score: 199 bits (505), Expect = 3.590e-61
Identity = 91/146 (62.33%), Postives = 112/146 (76.71%), Query Frame = 1
Query:    1 PTIAYQVTVDHTGRVLAVTEGFPGAQNDKTIIRYDAAVKSIREDPAYTEAVFHLRDATGSSVECKGAYLIVDNGYHKWRVTQEPTKYPLNKEETNYSKTLESVRKDVECFFGIVKGRFRILKLPALYQRKESIDNVFFTCCILHNM 438
            PTI YQVTVDH GR +AVTEGF G+ NDKT + +DAAV+ IR D  YTE  F + +  G++   KG Y++VDNGYHKW++  EP+KYPL++ +  +SK LESVRKDVECFFGI+KGR RIL L   +Q +E IDNVFFTCCILHNM
Sbjct:   60 PTIGYQVTVDHAGRAIAVTEGFTGSTNDKTTVCWDAAVEKIRTDKQYTEKTFDVYNQDGTTTTLKGCYVLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRLRILMLAMAFQSQERIDNVFFTCCILHNM 205          
BLAST of mRNA_F-serratus_M_contig101.202.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 2.270e-59
Identity = 94/146 (64.38%), Postives = 110/146 (75.34%), Query Frame = 1
Query:    1 PTIAYQVTVDHTGRVLAVTEGFPGAQNDKTIIRYDAAVKSIREDPAYTEAVFHLRDATGSSVECKGAYLIVDNGYHKWRVTQEPTKYPLNKEETNYSKTLESVRKDVECFFGIVKGRFRILKLPALYQRKESIDNVFFTCCILHNM 438
            PT+A+QVTVDH+GRVLAVT GF GA NDKTIIRYD AV  IR DP YTE  + L    G   E KG YL+VDNGYHKWR    P+K P+++ +  +SK LES RKDVEC+FGI+KGRFRI KL   + ++E IDNVFFTCCILHNM
Sbjct:  183 PTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNM 328          
BLAST of mRNA_F-serratus_M_contig101.202.1 vs. uniprot
Match: A0A6H5JQM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM6_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 2.440e-59
Identity = 90/146 (61.64%), Postives = 110/146 (75.34%), Query Frame = 1
Query:    1 PTIAYQVTVDHTGRVLAVTEGFPGAQNDKTIIRYDAAVKSIREDPAYTEAVFHLRDATGSSVECKGAYLIVDNGYHKWRVTQEPTKYPLNKEETNYSKTLESVRKDVECFFGIVKGRFRILKLPALYQRKESIDNVFFTCCILHNM 438
            PTIAY+VTVDH GR LAVT GF GA NDKTIIRYD+ V +IR +  YTE  + LR   G+    +G +LI+DN YH+W     P+KYP + ++T +S+ LESVRKDVECFFGI+KGRFRILKL   Y ++E IDN+FFTCCILHNM
Sbjct:   17 PTIAYEVTVDHVGRALAVTNGFTGATNDKTIIRYDSGVNNIRTESQYTEREYKLRKVNGTERTRRGCFLIMDNWYHEWVTLIAPSKYPQSNKDTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNM 162          
BLAST of mRNA_F-serratus_M_contig101.202.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 1.820e-58
Identity = 94/146 (64.38%), Postives = 110/146 (75.34%), Query Frame = 1
Query:    1 PTIAYQVTVDHTGRVLAVTEGFPGAQNDKTIIRYDAAVKSIREDPAYTEAVFHLRDATGSSVECKGAYLIVDNGYHKWRVTQEPTKYPLNKEETNYSKTLESVRKDVECFFGIVKGRFRILKLPALYQRKESIDNVFFTCCILHNM 438
            PT+A+QVTVDH+GRVLAVT GF GA NDKTIIRYD AV  IR DP YTE  + L    G   E KG YL+VDNGYHKWR    P+K P+++ +  +SK LES RKDVEC+FGI+KGRFRI KL   + ++E IDNVFFTCCILHNM
Sbjct:  274 PTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNM 419          
BLAST of mRNA_F-serratus_M_contig101.202.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 194 bits (493), Expect = 3.390e-58
Identity = 88/146 (60.27%), Postives = 109/146 (74.66%), Query Frame = 1
Query:    1 PTIAYQVTVDHTGRVLAVTEGFPGAQNDKTIIRYDAAVKSIREDPAYTEAVFHLRDATGSSVECKGAYLIVDNGYHKWRVTQEPTKYPLNKEETNYSKTLESVRKDVECFFGIVKGRFRILKLPALYQRKESIDNVFFTCCILHNM 438
            PT+ YQVTV+H GR +AVTEGF  + NDKT + +DA V+ IR D  YTE  F + +  G++   KG YL+VDNGYHKW++  EPTKYPL++ +  +SK LESVRKDVECFFGI+KG FRI K+   Y  +E IDNVFFTCCILHNM
Sbjct:  200 PTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWKILMEPTKYPLSENDILFSKRLESVRKDVECFFGILKGCFRIQKVAMAYHEQERIDNVFFTCCILHNM 345          
BLAST of mRNA_F-serratus_M_contig101.202.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 8.010e-58
Identity = 94/146 (64.38%), Postives = 110/146 (75.34%), Query Frame = 1
Query:    1 PTIAYQVTVDHTGRVLAVTEGFPGAQNDKTIIRYDAAVKSIREDPAYTEAVFHLRDATGSSVECKGAYLIVDNGYHKWRVTQEPTKYPLNKEETNYSKTLESVRKDVECFFGIVKGRFRILKLPALYQRKESIDNVFFTCCILHNM 438
            PT+ YQVTV+H GRVLAVTEGF G+ NDKTII  D AV  IR D  Y E  F +    G++   KG YLIVDNGYHKWR+  EP+KYPL++ +  +SK LESVRKDVECFFGI+K RFRILKL   YQ++E +D VFFTCCILHNM
Sbjct:  229 PTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHNM 374          
BLAST of mRNA_F-serratus_M_contig101.202.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 5.690e-54
Identity = 94/174 (54.02%), Postives = 113/174 (64.94%), Query Frame = 1
Query:    1 PTIAYQVTVDHTGRVLAVTEGFPGAQNDKTIIRYDAAVKSIREDPAYT----------------------------EAVFHLRDATGSSVECKGAYLIVDNGYHKWRVTQEPTKYPLNKEETNYSKTLESVRKDVECFFGIVKGRFRILKLPALYQRKESIDNVFFTCCILHNM 438
            PTIAYQVTVDH GR +AVTEGF G+ NDKTI+ +D AV+ I  D  YT                            E  F + +  G++   KG YL+VDNGYHKW++  EP+KYPL++ +  +SK LESVRKDVECFFGI+KGRFRILKL   YQ +E IDNVFFTC ILHNM
Sbjct:  187 PTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIVCWDTAVEKIWTDKHYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMEYQSQERIDNVFFTCYILHNM 360          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig101.202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTC6_9PHAE7.410e-6566.44DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JAU4_9PHAE4.580e-6367.12Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUX7_9PHAE7.980e-6365.07DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
D7FSK2_ECTSI3.590e-6162.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KY50_9PHAE2.270e-5964.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQM6_9PHAE2.440e-5961.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE1.820e-5864.38Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHI0_9PHAE3.390e-5860.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBE2_9PHAE8.010e-5864.38Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNX4_9PHAE5.690e-5454.02DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig101contigF-serratus_M_contig101:799973..800829 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score199.9
Seed ortholog evalue8.2e-49
Seed eggNOG ortholog2880.D7FSK2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Plant transposon protein
EggNOG OGs2E2RF@1,2S9YA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size439
Cds size438
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928808.2710917-CDS-F-serratus_M_contig101:799972..8001791622928808.2710917-CDS-F-serratus_M_contig101:799972..800179Fucus serratus maleCDSF-serratus_M_contig101 799973..800179 -
1690962581.650451-CDS-F-serratus_M_contig101:799972..8001791690962581.650451-CDS-F-serratus_M_contig101:799972..800179Fucus serratus maleCDSF-serratus_M_contig101 799973..800179 -
1622928808.2829762-CDS-F-serratus_M_contig101:800598..8008291622928808.2829762-CDS-F-serratus_M_contig101:800598..800829Fucus serratus maleCDSF-serratus_M_contig101 800599..800829 -
1690962581.6602201-CDS-F-serratus_M_contig101:800598..8008291690962581.6602201-CDS-F-serratus_M_contig101:800598..800829Fucus serratus maleCDSF-serratus_M_contig101 800599..800829 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig101.202.1prot_F-serratus_M_contig101.202.1Fucus serratus malepolypeptideF-serratus_M_contig101 799973..800829 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig101.202.1

>prot_F-serratus_M_contig101.202.1 ID=prot_F-serratus_M_contig101.202.1|Name=mRNA_F-serratus_M_contig101.202.1|organism=Fucus serratus male|type=polypeptide|length=146bp
PTIAYQVTVDHTGRVLAVTEGFPGAQNDKTIIRYDAAVKSIREDPAYTEA
VFHLRDATGSSVECKGAYLIVDNGYHKWRVTQEPTKYPLNKEETNYSKTL
ESVRKDVECFFGIVKGRFRILKLPALYQRKESIDNVFFTCCILHNM
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mRNA from alignment at F-serratus_M_contig101:799973..800829-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig101.202.1 ID=mRNA_F-serratus_M_contig101.202.1|Name=mRNA_F-serratus_M_contig101.202.1|organism=Fucus serratus male|type=mRNA|length=857bp|location=Sequence derived from alignment at F-serratus_M_contig101:799973..800829- (Fucus serratus male)
CCGACGATCGCTTACCAGGTGACAGTTGACCACACCGGCCGTGTCCTTGC GGTTACGGAAGGCTTCCCCGGAGCTCAAAACGATAAAACGATTATTCGCT ACGACGCTGCCGTCAAAAGCATTCGGGAGGACCCGGCTTACACCGAGGCG GTGTTCCACCTGAGGGACGCGACGGGGAGTTCCGTGGAGTGTAAAGGCGC CTACCTGATTGTCGACAACGGCTACCACAAGGTGAGGAAATAATGAAGAA CTTCGAACGCGTCACGAGAAAGATACAGCTTGAAGGAACAAGTCATTGTA TTTTTCTTGTAGGTTTGGTCCAAACAGGTGCAACAACAAATGCTGCGTAA AATCACCCGGTCACGGCTTCATGTGGTCATATCGTACCACAATTTGATCC TTGTCGAACAAGCGTTAGTTTTCTGTAAATGTTTGTTTCCTCTTGATACG TTCGATGCCACTTTTCGTTGTATGGTATGTTATCTTGTGTTTACCGTGGT TCGATTTCTAGTGGGTCGCTTCAACGTGAAGAACTACTGGACTCGTGTAG TCTAGCCAGGAATGTAACTATTCAGCGGCCTCAAGGCTGACACCGCCTCG CCCTTTCTCGACCCTTTGATGCTCACCATATTTTACTACGTATACCGTAG TGGCGGGTTACCCAAGAACCCACCAAGTACCCGCTCAACAAGGAGGAAAC CAATTACAGCAAGACGCTGGAGAGTGTACGCAAGGATGTCGAGTGCTTCT TCGGAATTGTTAAAGGGCGTTTCCGGATCCTCAAGCTCCCCGCTCTCTAC CAGAGGAAAGAGTCGATCGACAATGTGTTCTTCACGTGCTGTATTTTGCA CAACATG
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Coding sequence (CDS) from alignment at F-serratus_M_contig101:799973..800829-

>mRNA_F-serratus_M_contig101.202.1 ID=mRNA_F-serratus_M_contig101.202.1|Name=mRNA_F-serratus_M_contig101.202.1|organism=Fucus serratus male|type=CDS|length=876bp|location=Sequence derived from alignment at F-serratus_M_contig101:799973..800829- (Fucus serratus male)
CCGACGATCGCTTACCAGGTGACAGTTGACCACACCGGCCGTGTCCTTGC
GGTTACGGAAGGCTTCCCCGGAGCTCAAAACGATAAAACGATTATTCGCT
ACGACGCTGCCGTCAAAAGCATTCGGGAGGACCCGGCTTACACCGAGGCG
GTGTTCCACCTGAGGGACGCGACGGGGAGTTCCGTGGAGTGTAAAGGCGC
CTACCTGATTGTCGACAACGGCTACCACAAGCCGACGATCGCTTACCAGG
TGACAGTTGACCACACCGGCCGTGTCCTTGCGGTTACGGAAGGCTTCCCC
GGAGCTCAAAACGATAAAACGATTATTCGCTACGACGCTGCCGTCAAAAG
CATTCGGGAGGACCCGGCTTACACCGAGGCGGTGTTCCACCTGAGGGACG
CGACGGGGAGTTCCGTGGAGTGTAAAGGCGCCTACCTGATTGTCGACAAC
GGCTACCACAAGTGGCGGGTTACCCAAGAACCCACCAAGTACCCGCTCAA
CAAGGAGGAAACCAATTACAGCAAGACGCTGGAGAGTGTACGCAAGGATG
TCGAGTGCTTCTTCGGAATTGTTAAAGGGCGTTTCCGGATCCTCAAGCTC
CCCGCTCTCTACCAGAGGAAAGAGTCGATCGACAATGTGTTCTTCACGTG
CTGTATTTTGCACAACATGTGGCGGGTTACCCAAGAACCCACCAAGTACC
CGCTCAACAAGGAGGAAACCAATTACAGCAAGACGCTGGAGAGTGTACGC
AAGGATGTCGAGTGCTTCTTCGGAATTGTTAAAGGGCGTTTCCGGATCCT
CAAGCTCCCCGCTCTCTACCAGAGGAAAGAGTCGATCGACAATGTGTTCT
TCACGTGCTGTATTTTGCACAACATG
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