mRNA_F-serratus_M_contig101.201.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig101.201.1
Unique NamemRNA_F-serratus_M_contig101.201.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig101.201.1 vs. uniprot
Match: A0A6H5JV45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV45_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 1.870e-5
Identity = 30/80 (37.50%), Postives = 42/80 (52.50%), Query Frame = -3 
Query:  186 CILHNMLHAYDGLDKLEEDVDWAGGDGLHDSITD----PSVTPATDCSSVGGPSNNESVEVEPSHDELKRKLITSFTYRK 413
            CI+HNMLH +DGL  LE+DVDWAG DG  D  T     P+    T    V    N E+ ++       +++L+    Y+K
Sbjct:  352 CIIHNMLHQFDGLANLEKDVDWAGKDGEADQTTGAFPVPTAVVDTAGEEVDDGDNTEAFKL------FRQQLVNHVAYKK 425
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BLAST of mRNA_F-serratus_M_contig101.201.1 vs. uniprot
Match: A0A6H5K9X5_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9X5_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 2.630e-5
Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = -3 
Query:  321 CCILHNMLHAYDGLDKLEEDVDWAGGDGLHDS 416
            CC LHNMLHA+DGLD+LE   +W G  GLHD+
Sbjct:  423 CCTLHNMLHAFDGLDELESAEEWGGRAGLHDA 454
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BLAST of mRNA_F-serratus_M_contig101.201.1 vs. uniprot
Match: D7FV01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV01_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 5.590e-5
Identity = 32/91 (35.16%), Postives = 40/91 (43.96%), Query Frame = -3 
Query:  156 CILHNMLHAYDGLDKLEEDVDWAGGDG-LHDSITDPSVTPATDCSSVGGPSNNE----SVEVEPSHDELKRKLITSFTYRKEHNDIVWLTR 413
            CILHNMLH ++GLD++EED DW G  G L D    P          VG     E    +    P  D  + KL+  F Y      + W  R
Sbjct:  214 CILHNMLHKFNGLDEMEEDADWVGSAGELGDMPQQP----------VGMGDEKEXXXXTETAAPGFDGFRAKLVAHFAYMWRIKQVFWFKR 294
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig101.201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A6H5JV45_9PHAE1.870e-537.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9X5_9PHAE2.630e-565.63DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
D7FV01_ECTSI5.590e-535.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig101contigF-serratus_M_contig101:799578..799995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size418
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig101.201.1prot_F-serratus_M_contig101.201.1Fucus serratus malepolypeptideF-serratus_M_contig101 799641..799970 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928804.4749303-UTR-F-serratus_M_contig101:799577..7996401622928804.4749303-UTR-F-serratus_M_contig101:799577..799640Fucus serratus maleUTRF-serratus_M_contig101 799578..799640 +
1690962579.9429958-UTR-F-serratus_M_contig101:799577..7996401690962579.9429958-UTR-F-serratus_M_contig101:799577..799640Fucus serratus maleUTRF-serratus_M_contig101 799578..799640 +
1622928804.514156-UTR-F-serratus_M_contig101:799970..7999951622928804.514156-UTR-F-serratus_M_contig101:799970..799995Fucus serratus maleUTRF-serratus_M_contig101 799971..799995 +
1690962579.96682-UTR-F-serratus_M_contig101:799970..7999951690962579.96682-UTR-F-serratus_M_contig101:799970..799995Fucus serratus maleUTRF-serratus_M_contig101 799971..799995 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928804.4887238-CDS-F-serratus_M_contig101:799640..7999701622928804.4887238-CDS-F-serratus_M_contig101:799640..799970Fucus serratus maleCDSF-serratus_M_contig101 799641..799970 +
1690962579.9556236-CDS-F-serratus_M_contig101:799640..7999701690962579.9556236-CDS-F-serratus_M_contig101:799640..799970Fucus serratus maleCDSF-serratus_M_contig101 799641..799970 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig101.201.1

>prot_F-serratus_M_contig101.201.1 ID=prot_F-serratus_M_contig101.201.1|Name=mRNA_F-serratus_M_contig101.201.1|organism=Fucus serratus male|type=polypeptide|length=110bp
MRKLFGRARPASVHVSIVHIFMHPCLESKAYLVSQTMSLCSLRYVKEVMS
FLFNSSCDGSTSTDSLLEGPPTELQSVAGVTEGSVIESWRPSPPAQSTSS
SSLSSPSYA*
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mRNA from alignment at F-serratus_M_contig101:799578..799995+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig101.201.1 ID=mRNA_F-serratus_M_contig101.201.1|Name=mRNA_F-serratus_M_contig101.201.1|organism=Fucus serratus male|type=mRNA|length=418bp|location=Sequence derived from alignment at F-serratus_M_contig101:799578..799995+ (Fucus serratus male)
GCCGACAGTACCATTCACGCGTGACTGCTACATATCTTCAGTACAACATC
TCCAGCTGCAATCATGCGGAAACTTTTCGGGCGTGCAAGACCTGCCTCCG
TACACGTCTCAATCGTACATATCTTCATGCACCCCTGCCTAGAATCGAAA
GCTTATCTTGTCAGCCAAACAATGTCATTGTGCTCCTTGCGGTACGTGAA
GGAAGTAATGAGTTTCCTCTTCAACTCGTCGTGTGACGGCTCAACTTCGA
CCGATTCATTGTTGGAAGGGCCTCCTACCGAGCTACAGTCCGTCGCAGGG
GTCACCGAAGGGTCCGTAATCGAGTCATGGAGACCATCCCCTCCTGCCCA
GTCAACGTCTTCCTCCAGCTTGTCCAGTCCGTCGTACGCGTGAAGCATGT
TGTGCAAAATACAGCACG
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Coding sequence (CDS) from alignment at F-serratus_M_contig101:799578..799995+

>mRNA_F-serratus_M_contig101.201.1 ID=mRNA_F-serratus_M_contig101.201.1|Name=mRNA_F-serratus_M_contig101.201.1|organism=Fucus serratus male|type=CDS|length=660bp|location=Sequence derived from alignment at F-serratus_M_contig101:799578..799995+ (Fucus serratus male)
ATGCGGAAACTTTTCGGGCGTGCAAGACCTGCCTCCGTACACGTCTCAAT
CGTACATATCTTCATGCACCCCTGCCTAGAATCGAAAGCTTATCTTGTCA
GCCAAACAATGTCATTGTGCTCCTTGCGGTACGTGAAGGAAGTAATGAGT
TTCCTCTTCAACTCGTCGTGTGACGGCTCAACTTCGACCGATTCATTGTT
GGAAGGGCCTCCTACCGAGCTACAGTCCGTCGCAGGGGTCACCGAAGGGT
CCGTAATCGAGTCATGGAGACCATCCCCTCCTGCCCAGTCAACGTCTTCC
TCCAGCTTGTCCAGTCCGTCGTACGCGTGAATGCGGAAACTTTTCGGGCG
TGCAAGACCTGCCTCCGTACACGTCTCAATCGTACATATCTTCATGCACC
CCTGCCTAGAATCGAAAGCTTATCTTGTCAGCCAAACAATGTCATTGTGC
TCCTTGCGGTACGTGAAGGAAGTAATGAGTTTCCTCTTCAACTCGTCGTG
TGACGGCTCAACTTCGACCGATTCATTGTTGGAAGGGCCTCCTACCGAGC
TACAGTCCGTCGCAGGGGTCACCGAAGGGTCCGTAATCGAGTCATGGAGA
CCATCCCCTCCTGCCCAGTCAACGTCTTCCTCCAGCTTGTCCAGTCCGTC
GTACGCGTGA
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