mRNA_F-serratus_M_contig101.201.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig101.201.1
Unique NamemRNA_F-serratus_M_contig101.201.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig101.201.1 vs. uniprot
Match: A0A6H5L0X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0X4_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.100e-10
Identity = 37/88 (42.05%), Postives = 51/88 (57.95%), Query Frame = -3
Query:  156 CCILHNMLHAYDGLDKLEEDVDWAGGDGLHDSITDPSVTPATDCSSVGGPSNNESVEVEPSHDELKRKLITSFTYRKEHN-DIVWLTR 416
            CCI+HNMLH +DG+D+L E+       G+  ++         DC SVG    N+  ++E      KR+L TSF YRK+H  DIVWL+R
Sbjct:  375 CCIMHNMLHTFDGMDQLVENTIRVSSAGVGATLA---TELEADCGSVGRRDVNDQPQLEIGRTVRKRQLTTSFAYRKKHKKDIVWLSR 459          
BLAST of mRNA_F-serratus_M_contig101.201.1 vs. uniprot
Match: A0A6H5JLC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLC3_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 3.690e-10
Identity = 35/86 (40.70%), Postives = 50/86 (58.14%), Query Frame = -3
Query:  165 CCILHNMLHAYDGLDKLEEDVDWAGGDG-LHDSITDPSVTPATDCSSVGGPSNNESV-EVEPSHDELKRKLITSFTYRKEHNDIVW 416
            C ILHNML AYDG++ LE D DWAG DG L + I  P V        +  P++ ++V E +   + L++KL+T+F YR     + W
Sbjct:   70 CIILHNMLLAYDGIELLEPDCDWAGADGDLDEDIVHPDVR-------MSAPTHEDAVVECDAGFEALRQKLVTNFAYRWGQGTVGW 148          
BLAST of mRNA_F-serratus_M_contig101.201.1 vs. uniprot
Match: A0A6H5JP18_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP18_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 9.320e-10
Identity = 36/86 (41.86%), Postives = 50/86 (58.14%), Query Frame = -3
Query:  165 CCILHNMLHAYDGLDKLEEDVDWAGGDG-LHDSITDPSVTPATDCSSVGGPSNNESV-EVEPSHDELKRKLITSFTYRKEHNDIVW 416
            C ILHNML AYDG++ LE D DWAG DG L  +I  P V        +  P++ ++V E +   D L++KL+T+F YR     + W
Sbjct:  101 CIILHNMLLAYDGIELLEPDCDWAGADGDLDKNIEHPVVR-------MSAPTHEDAVVECDDGFDALRQKLVTNFAYRWGQGTVGW 179          
BLAST of mRNA_F-serratus_M_contig101.201.1 vs. uniprot
Match: A0A6H5J6J6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6J6_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.270e-9
Identity = 36/86 (41.86%), Postives = 50/86 (58.14%), Query Frame = -3
Query:  165 CCILHNMLHAYDGLDKLEEDVDWAGGDG-LHDSITDPSVTPATDCSSVGGPSNNESV-EVEPSHDELKRKLITSFTYRKEHNDIVW 416
            C ILHNML AYDG++ LE D DWAG DG L  +I  P V        +  P++ ++V E +   D L++KL+T+F YR     + W
Sbjct:  122 CIILHNMLLAYDGIELLEPDCDWAGADGDLDKNIEHPVVR-------MSAPTHEDAVVECDDGFDALRQKLVTNFAYRWGQGTVGW 200          
BLAST of mRNA_F-serratus_M_contig101.201.1 vs. uniprot
Match: A0A6H5K8I3_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8I3_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 4.500e-9
Identity = 36/86 (41.86%), Postives = 50/86 (58.14%), Query Frame = -3
Query:  165 CCILHNMLHAYDGLDKLEEDVDWAGGDG-LHDSITDPSVTPATDCSSVGGPSNNESV-EVEPSHDELKRKLITSFTYRKEHNDIVW 416
            C ILHNML AYDG++ LE D DWAG DG L  +I  P V        +  P++ ++V E +   D L++KL+T+F YR     + W
Sbjct:  372 CIILHNMLLAYDGIELLEPDCDWAGADGDLDKNIEHPVVR-------MSAPTHEDAVVECDDGFDALRQKLVTNFAYRWGQGTVGW 450          
BLAST of mRNA_F-serratus_M_contig101.201.1 vs. uniprot
Match: A0A6H5JBW9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBW9_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.780e-8
Identity = 36/77 (46.75%), Postives = 44/77 (57.14%), Query Frame = -3
Query:  189 CCILHNMLHAYDGLDKLEEDVDWAGGDG-LHDSITDPSVTPATDCSSVGGPSNNESVEVEPSHDELKRKLITSFTYR 416
            C ILHNML AYDG++ LE D DWAG DG L D I  P      D   +      E VE +    EL++KL+T+F YR
Sbjct:  107 CVILHNMLLAYDGIELLEADCDWAGADGNLDDHIVHP------DARRMAITHEAEVVEWDDDFLELRQKLVTNFAYR 177          
BLAST of mRNA_F-serratus_M_contig101.201.1 vs. uniprot
Match: A0A6H5JKX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKX2_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 3.100e-7
Identity = 35/77 (45.45%), Postives = 43/77 (55.84%), Query Frame = -3
Query:  189 CCILHNMLHAYDGLDKLEEDVDWAGGDG-LHDSITDPSVTPATDCSSVGGPSNNESVEVEPSHDELKRKLITSFTYR 416
            C ILHNML AYDG++ LE D DWA  DG L D I  P      D   +      E VE +    EL++KL+T+F YR
Sbjct:  112 CVILHNMLLAYDGIELLEADCDWARADGNLDDHIVHP------DARRMAITHEAEVVEWDDDFLELRQKLVTNFAYR 182          
BLAST of mRNA_F-serratus_M_contig101.201.1 vs. uniprot
Match: A0A6H5K872_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K872_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 1.150e-6
Identity = 36/88 (40.91%), Postives = 43/88 (48.86%), Query Frame = -3
Query:  198 CCILHNMLHAYDGLDKLEEDVDWAGGDGLHDSITDPSVTPATDCSSVGG------PSNNESVE---------VEPSHDELKRKLITSF 416
            CCI HNMLH +DGLD  EE+ DW G  G HD+       P  D +SVG       P + E  E             H ELK++LI SF
Sbjct:  308 CCIRHNMLHTFDGLDLFEENTDWTGSAGHHDAWE---RDPLMDYTSVGSKGVLLPPKDGEKEERGEGGHVRKERQDHAELKKQLIESF 392          
BLAST of mRNA_F-serratus_M_contig101.201.1 vs. uniprot
Match: A0A6H5JUC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUC8_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 1.070e-5
Identity = 32/79 (40.51%), Postives = 41/79 (51.90%), Query Frame = -3
Query:  165 MLHAYDGLDKLEEDVDWAGGDG-LHDSITDPSVTPATDCSSVGGPSNNESVEVEPSHDELKRKLITSFTYRKEHNDIVW 398
            ML AYDG++ LE D DWAG DG L D I  P      D   +      E VE +    EL++KL+T+F YR     + W
Sbjct:    1 MLLAYDGIELLEADCDWAGADGNLDDHIVHP------DARRMAITHEAEVVEWDDDFLELRQKLVTNFAYRWGQGTVGW 73          
BLAST of mRNA_F-serratus_M_contig101.201.1 vs. uniprot
Match: A0A6H5JXJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXJ4_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 1.410e-5
Identity = 26/64 (40.62%), Postives = 33/64 (51.56%), Query Frame = -3
Query:  225 CCILHNMLHAYDGLDKLEEDVDWAGGDGLHDSITDPSVTPATDCSSVGGPSNNESVEVEPSHDE 416
            CCILHNMLH +DG+D+L E+  W  G G    +         D S VG    N+  +VE  H E
Sbjct:   59 CCILHNMLHIFDGMDQLVENTLWVSGAGAGTGVA---TEQEADSSFVGAKDTNDKEQVEKGHGE 119          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig101.201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A6H5L0X4_9PHAE1.100e-1042.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLC3_9PHAE3.690e-1040.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JP18_9PHAE9.320e-1041.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J6J6_9PHAE1.270e-941.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8I3_9PHAE4.500e-941.86Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBW9_9PHAE1.780e-846.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKX2_9PHAE3.100e-745.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K872_9PHAE1.150e-640.91DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5JUC8_9PHAE1.070e-540.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXJ4_9PHAE1.410e-540.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig101contigF-serratus_M_contig101:799578..799995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size418
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig101.201.1prot_F-serratus_M_contig101.201.1Fucus serratus malepolypeptideF-serratus_M_contig101 799641..799970 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928804.4749303-UTR-F-serratus_M_contig101:799577..7996401622928804.4749303-UTR-F-serratus_M_contig101:799577..799640Fucus serratus maleUTRF-serratus_M_contig101 799578..799640 +
1690962579.9429958-UTR-F-serratus_M_contig101:799577..7996401690962579.9429958-UTR-F-serratus_M_contig101:799577..799640Fucus serratus maleUTRF-serratus_M_contig101 799578..799640 +
1622928804.514156-UTR-F-serratus_M_contig101:799970..7999951622928804.514156-UTR-F-serratus_M_contig101:799970..799995Fucus serratus maleUTRF-serratus_M_contig101 799971..799995 +
1690962579.96682-UTR-F-serratus_M_contig101:799970..7999951690962579.96682-UTR-F-serratus_M_contig101:799970..799995Fucus serratus maleUTRF-serratus_M_contig101 799971..799995 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928804.4887238-CDS-F-serratus_M_contig101:799640..7999701622928804.4887238-CDS-F-serratus_M_contig101:799640..799970Fucus serratus maleCDSF-serratus_M_contig101 799641..799970 +
1690962579.9556236-CDS-F-serratus_M_contig101:799640..7999701690962579.9556236-CDS-F-serratus_M_contig101:799640..799970Fucus serratus maleCDSF-serratus_M_contig101 799641..799970 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig101.201.1

>prot_F-serratus_M_contig101.201.1 ID=prot_F-serratus_M_contig101.201.1|Name=mRNA_F-serratus_M_contig101.201.1|organism=Fucus serratus male|type=polypeptide|length=110bp
MRKLFGRARPASVHVSIVHIFMHPCLESKAYLVSQTMSLCSLRYVKEVMS
FLFNSSCDGSTSTDSLLEGPPTELQSVAGVTEGSVIESWRPSPPAQSTSS
SSLSSPSYA*
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mRNA from alignment at F-serratus_M_contig101:799578..799995+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig101.201.1 ID=mRNA_F-serratus_M_contig101.201.1|Name=mRNA_F-serratus_M_contig101.201.1|organism=Fucus serratus male|type=mRNA|length=418bp|location=Sequence derived from alignment at F-serratus_M_contig101:799578..799995+ (Fucus serratus male)
GCCGACAGTACCATTCACGCGTGACTGCTACATATCTTCAGTACAACATC TCCAGCTGCAATCATGCGGAAACTTTTCGGGCGTGCAAGACCTGCCTCCG TACACGTCTCAATCGTACATATCTTCATGCACCCCTGCCTAGAATCGAAA GCTTATCTTGTCAGCCAAACAATGTCATTGTGCTCCTTGCGGTACGTGAA GGAAGTAATGAGTTTCCTCTTCAACTCGTCGTGTGACGGCTCAACTTCGA CCGATTCATTGTTGGAAGGGCCTCCTACCGAGCTACAGTCCGTCGCAGGG GTCACCGAAGGGTCCGTAATCGAGTCATGGAGACCATCCCCTCCTGCCCA GTCAACGTCTTCCTCCAGCTTGTCCAGTCCGTCGTACGCGTGAAGCATGT TGTGCAAAATACAGCACG
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Coding sequence (CDS) from alignment at F-serratus_M_contig101:799578..799995+

>mRNA_F-serratus_M_contig101.201.1 ID=mRNA_F-serratus_M_contig101.201.1|Name=mRNA_F-serratus_M_contig101.201.1|organism=Fucus serratus male|type=CDS|length=660bp|location=Sequence derived from alignment at F-serratus_M_contig101:799578..799995+ (Fucus serratus male)
ATGCGGAAACTTTTCGGGCGTGCAAGACCTGCCTCCGTACACGTCTCAAT
CGTACATATCTTCATGCACCCCTGCCTAGAATCGAAAGCTTATCTTGTCA
GCCAAACAATGTCATTGTGCTCCTTGCGGTACGTGAAGGAAGTAATGAGT
TTCCTCTTCAACTCGTCGTGTGACGGCTCAACTTCGACCGATTCATTGTT
GGAAGGGCCTCCTACCGAGCTACAGTCCGTCGCAGGGGTCACCGAAGGGT
CCGTAATCGAGTCATGGAGACCATCCCCTCCTGCCCAGTCAACGTCTTCC
TCCAGCTTGTCCAGTCCGTCGTACGCGTGAATGCGGAAACTTTTCGGGCG
TGCAAGACCTGCCTCCGTACACGTCTCAATCGTACATATCTTCATGCACC
CCTGCCTAGAATCGAAAGCTTATCTTGTCAGCCAAACAATGTCATTGTGC
TCCTTGCGGTACGTGAAGGAAGTAATGAGTTTCCTCTTCAACTCGTCGTG
TGACGGCTCAACTTCGACCGATTCATTGTTGGAAGGGCCTCCTACCGAGC
TACAGTCCGTCGCAGGGGTCACCGAAGGGTCCGTAATCGAGTCATGGAGA
CCATCCCCTCCTGCCCAGTCAACGTCTTCCTCCAGCTTGTCCAGTCCGTC
GTACGCGTGA
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