mRNA_F-serratus_M_contig101.201.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig101.201.1
Unique NamemRNA_F-serratus_M_contig101.201.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig101.201.1 vs. uniprot
Match: A0A6H5L135_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L135_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 3.240e-23
Identity = 48/97 (49.48%), Postives = 61/97 (62.89%), Query Frame = -3 
Query:  156 CCILHNMLHAYDGLDKLEEDVDWAGGDGLHDSITDPSVTPATDCSSVGGPS----------NNESVEVEPSHDELKRKLITSFTYRKEHNDIVWLTR 416
            CCILHNMLH +DG+D  EEDVDW G  GLHD      +T  T   S G  S          ++E+++  P+H ELK++LI SF+YRK HNDI WL+R
Sbjct:   74 CCILHNMLHTFDGMDVFEEDVDWVGSAGLHDPWDHDPLTDFTSIGSTGKLSEKEGGXXXXESSETIDQHPAHRELKKQLIESFSYRKRHNDITWLSR 170
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BLAST of mRNA_F-serratus_M_contig101.201.1 vs. uniprot
Match: A0A6H5K5C1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5C1_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 2.870e-21
Identity = 48/97 (49.48%), Postives = 61/97 (62.89%), Query Frame = -3 
Query:  156 CCILHNMLHAYDGLDKLEEDVDWAGGDGLHDSITDPSVTPATDCSSVGGPS----------NNESVEVEPSHDELKRKLITSFTYRKEHNDIVWLTR 416
            CCILHNMLH +DG+D  EEDVDW G  GLHD      +T  T   S G  S          ++E+++  P+H ELK++LI SF+YRK HNDI WL+R
Sbjct:  395 CCILHNMLHTFDGMDVFEEDVDWVGSAGLHDPWDHDPLTDFTSIGSTGKLSEKEGGXXXXESSETIDQHPAHRELKKQLIESFSYRKRHNDITWLSR 491
[Close]
BLAST of mRNA_F-serratus_M_contig101.201.1 vs. uniprot
Match: A0A6H5JZL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZL5_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 3.670e-17
Identity = 40/88 (45.45%), Postives = 55/88 (62.50%), Query Frame = -3 
Query:  156 CCILHNMLHAYDGLDKLEEDVDWAGGDGLHDSITDPSVTPATDCSSVGGPSNNESVEVEPSHDELKRKLITSFTYRKEHN-DIVWLTR 416
            CCILHNMLH +DG+D+L E+ +W    G+  ++      P  DC SVG    N+  ++E  H   KR+L TSF YRK+H  DI+WL+R
Sbjct:   80 CCILHNMLHTFDGMDQLVENTNWISSAGVGATLA---TEPEADCGSVGTKDVNDQPQLEIGHTVRKRQLTTSFAYRKKHKKDIIWLSR 164
[Close]
BLAST of mRNA_F-serratus_M_contig101.201.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.480e-16
Identity = 48/103 (46.60%), Postives = 56/103 (54.37%), Query Frame = -3 
Query:  156 CCILHNMLHAYDGLDKLEEDVDWAGGDGLHDSITDPSVTPATDCSSVGG------PSNNESVEV----------EPSHDELKRKLITSFTYRKEHNDIVWLTR 416
            CCILHNMLH +DGLD  EE+ DW G  G HD+       P TD +SVG       P   E  E            P H ELKR+LI SF +RK+ NDI WL+R
Sbjct:  267 CCILHNMLHTFDGLDVFEENTDWTGSAGHHDAWEHD---PLTDYTSVGSKGVLLPPKEGEKAECGEGGHVRKERHPDHAELKRQLIESFAFRKKINDITWLSR 366
[Close]
BLAST of mRNA_F-serratus_M_contig101.201.1 vs. uniprot
Match: A0A6H5JQM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM6_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.600e-16
Identity = 44/100 (44.00%), Postives = 54/100 (54.00%), Query Frame = -3 
Query:  156 CCILHNMLHAYDGLDKLEEDVDWAGGDGLHDSITDPSVTPATDCSSVG-------------GPSNNESVEVEPSHDELKRKLITSFTYRKEHNDIVWLTR 416
            CCILHNMLH +DGLD  +E+ DW G  G HD+     +T  T   S G             G   +   E  P H ELKR+LI SF +RK+ NDI WL+R
Sbjct:  156 CCILHNMLHTFDGLDVFDENTDWTGSAGHHDAWEHDPLTDYTSVGSKGVLLLPKEGEEEECGEGGHVRKERHPDHAELKRQLIESFAFRKKINDITWLSR 255
[Close]
BLAST of mRNA_F-serratus_M_contig101.201.1 vs. uniprot
Match: A0A6H5JTS2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTS2_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 3.320e-16
Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = -3 
Query:  156 CCILHNMLHAYDGLDKLEEDVDWAGGDGLHDSITDPSVTPATDCSSVGGPSNNESVEVEPSHDELKRKLITSFTYRKEHN-DIVWLTR 416
            CCILHNMLH +DG+D+L E+ +W    G+  ++      P +DC SVG    N+  ++E  H   KR+L TSF YRK+H  DIVWL+R
Sbjct:  311 CCILHNMLHTFDGIDQLVENTNWVSSAGVGATLA---TEPESDCGSVGTKDVNDQPQLEIGHTVRKRQLTTSFAYRKKHKKDIVWLSR 395
[Close]
BLAST of mRNA_F-serratus_M_contig101.201.1 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 1.030e-15
Identity = 40/88 (45.45%), Postives = 54/88 (61.36%), Query Frame = -3 
Query:  156 CCILHNMLHAYDGLDKLEEDVDWAGGDGLHDSITDPSVTPATDCSSVGGPSNNESVEVEPSHDELKRKLITSFTYRKEHN-DIVWLTR 416
            CCILHNMLH +DG+D+L E+ +W    G+  ++      P  DC S G    N+  ++E  H   KR+L TSF YRK+H  DIVWL+R
Sbjct:  244 CCILHNMLHTFDGMDQLVENTNWVSSAGVGTTLA---TEPEADCGSFGTKDVNDQPQLEIGHTVRKRQLTTSFAYRKKHKKDIVWLSR 328
[Close]
BLAST of mRNA_F-serratus_M_contig101.201.1 vs. uniprot
Match: A0A6H5KEB6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB6_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 3.120e-15
Identity = 44/100 (44.00%), Postives = 53/100 (53.00%), Query Frame = -3 
Query:  156 CCILHNMLHAYDGLDKLEEDVDWAGGDGLHDSITDPSVTPATDCSSVG-------------GPSNNESVEVEPSHDELKRKLITSFTYRKEHNDIVWLTR 416
            CCILHNMLH +DGLD  EE+ DW G  G HD+     +T  T   S G             G   +   E  P H E KR LI SF +RK+ NDI+WL+R
Sbjct:  534 CCILHNMLHTFDGLDVFEENTDWTGSAGHHDAWEHDPLTDYTSVGSKGVLLPPKEGEEEECGEGGHVRKERHPYHAESKRHLIESFAFRKKINDIIWLSR 633
[Close]
BLAST of mRNA_F-serratus_M_contig101.201.1 vs. uniprot
Match: A0A6H5JMK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMK5_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 2.150e-13
Identity = 38/83 (45.78%), Postives = 49/83 (59.04%), Query Frame = -3 
Query:  198 CCILHNMLHAYDGLDKLEEDVDWAGGDGLHDSITDPSVTPATDCSSVGGPS----------NNESVEVEPSHDELKRKLITSF 416
            CCILHNMLH +DG+D  EEDVDW G  GLHD      +T  T   S G  S          ++E+++  P+H ELK++LI SF
Sbjct:   64 CCILHNMLHTFDGMDVFEEDVDWVGSAGLHDPWDHDPLTDFTSIGSTGKLSEKEGGXXXXESSETIDQHPAHRELKKQLIESF 146
[Close]
BLAST of mRNA_F-serratus_M_contig101.201.1 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 3.510e-12
Identity = 40/86 (46.51%), Postives = 52/86 (60.47%), Query Frame = -3 
Query:  165 CCILHNMLHAYDGLDKLEEDVDWAGGDGLHD-SITDPSVTPATDCSSVGGPSNNESVEVEPSHDELKRKLITSFTYRKEHN-DIVW 416
            CCILHNMLH +DG+D+L E+ +W    G+   S+T+P      D  SVG    N   +VE  H   KR+L TSF YRK+H  DIV+
Sbjct:  199 CCILHNMLHTFDGMDQLVENTNWVSSAGVGTTSVTEPEA----DSGSVGTKDVNGRPQVEAGHAVRKRQLTTSFAYRKKHKKDIVY 280
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig101.201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A6H5L135_9PHAE3.240e-2349.48Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5C1_9PHAE2.870e-2149.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZL5_9PHAE3.670e-1745.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K796_9PHAE1.480e-1646.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQM6_9PHAE1.600e-1644.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTS2_9PHAE3.320e-1646.59DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JUX7_9PHAE1.030e-1545.45DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KEB6_9PHAE3.120e-1544.00DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JMK5_9PHAE2.150e-1345.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSK2_ECTSI3.510e-1246.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig101contigF-serratus_M_contig101:799578..799995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size418
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig101.201.1prot_F-serratus_M_contig101.201.1Fucus serratus malepolypeptideF-serratus_M_contig101 799641..799970 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928804.4749303-UTR-F-serratus_M_contig101:799577..7996401622928804.4749303-UTR-F-serratus_M_contig101:799577..799640Fucus serratus maleUTRF-serratus_M_contig101 799578..799640 +
1690962579.9429958-UTR-F-serratus_M_contig101:799577..7996401690962579.9429958-UTR-F-serratus_M_contig101:799577..799640Fucus serratus maleUTRF-serratus_M_contig101 799578..799640 +
1622928804.514156-UTR-F-serratus_M_contig101:799970..7999951622928804.514156-UTR-F-serratus_M_contig101:799970..799995Fucus serratus maleUTRF-serratus_M_contig101 799971..799995 +
1690962579.96682-UTR-F-serratus_M_contig101:799970..7999951690962579.96682-UTR-F-serratus_M_contig101:799970..799995Fucus serratus maleUTRF-serratus_M_contig101 799971..799995 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928804.4887238-CDS-F-serratus_M_contig101:799640..7999701622928804.4887238-CDS-F-serratus_M_contig101:799640..799970Fucus serratus maleCDSF-serratus_M_contig101 799641..799970 +
1690962579.9556236-CDS-F-serratus_M_contig101:799640..7999701690962579.9556236-CDS-F-serratus_M_contig101:799640..799970Fucus serratus maleCDSF-serratus_M_contig101 799641..799970 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig101.201.1

>prot_F-serratus_M_contig101.201.1 ID=prot_F-serratus_M_contig101.201.1|Name=mRNA_F-serratus_M_contig101.201.1|organism=Fucus serratus male|type=polypeptide|length=110bp
MRKLFGRARPASVHVSIVHIFMHPCLESKAYLVSQTMSLCSLRYVKEVMS
FLFNSSCDGSTSTDSLLEGPPTELQSVAGVTEGSVIESWRPSPPAQSTSS
SSLSSPSYA*
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mRNA from alignment at F-serratus_M_contig101:799578..799995+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig101.201.1 ID=mRNA_F-serratus_M_contig101.201.1|Name=mRNA_F-serratus_M_contig101.201.1|organism=Fucus serratus male|type=mRNA|length=418bp|location=Sequence derived from alignment at F-serratus_M_contig101:799578..799995+ (Fucus serratus male)
GCCGACAGTACCATTCACGCGTGACTGCTACATATCTTCAGTACAACATC
TCCAGCTGCAATCATGCGGAAACTTTTCGGGCGTGCAAGACCTGCCTCCG
TACACGTCTCAATCGTACATATCTTCATGCACCCCTGCCTAGAATCGAAA
GCTTATCTTGTCAGCCAAACAATGTCATTGTGCTCCTTGCGGTACGTGAA
GGAAGTAATGAGTTTCCTCTTCAACTCGTCGTGTGACGGCTCAACTTCGA
CCGATTCATTGTTGGAAGGGCCTCCTACCGAGCTACAGTCCGTCGCAGGG
GTCACCGAAGGGTCCGTAATCGAGTCATGGAGACCATCCCCTCCTGCCCA
GTCAACGTCTTCCTCCAGCTTGTCCAGTCCGTCGTACGCGTGAAGCATGT
TGTGCAAAATACAGCACG
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Coding sequence (CDS) from alignment at F-serratus_M_contig101:799578..799995+

>mRNA_F-serratus_M_contig101.201.1 ID=mRNA_F-serratus_M_contig101.201.1|Name=mRNA_F-serratus_M_contig101.201.1|organism=Fucus serratus male|type=CDS|length=660bp|location=Sequence derived from alignment at F-serratus_M_contig101:799578..799995+ (Fucus serratus male)
ATGCGGAAACTTTTCGGGCGTGCAAGACCTGCCTCCGTACACGTCTCAAT
CGTACATATCTTCATGCACCCCTGCCTAGAATCGAAAGCTTATCTTGTCA
GCCAAACAATGTCATTGTGCTCCTTGCGGTACGTGAAGGAAGTAATGAGT
TTCCTCTTCAACTCGTCGTGTGACGGCTCAACTTCGACCGATTCATTGTT
GGAAGGGCCTCCTACCGAGCTACAGTCCGTCGCAGGGGTCACCGAAGGGT
CCGTAATCGAGTCATGGAGACCATCCCCTCCTGCCCAGTCAACGTCTTCC
TCCAGCTTGTCCAGTCCGTCGTACGCGTGAATGCGGAAACTTTTCGGGCG
TGCAAGACCTGCCTCCGTACACGTCTCAATCGTACATATCTTCATGCACC
CCTGCCTAGAATCGAAAGCTTATCTTGTCAGCCAAACAATGTCATTGTGC
TCCTTGCGGTACGTGAAGGAAGTAATGAGTTTCCTCTTCAACTCGTCGTG
TGACGGCTCAACTTCGACCGATTCATTGTTGGAAGGGCCTCCTACCGAGC
TACAGTCCGTCGCAGGGGTCACCGAAGGGTCCGTAATCGAGTCATGGAGA
CCATCCCCTCCTGCCCAGTCAACGTCTTCCTCCAGCTTGTCCAGTCCGTC
GTACGCGTGA
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