mRNA_F-serratus_M_contig101.197.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig101.197.1
Unique NamemRNA_F-serratus_M_contig101.197.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig101.197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig101contigF-serratus_M_contig101:216492..217267 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size450
Cds size435
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig101.197.1prot_F-serratus_M_contig101.197.1Fucus serratus malepolypeptideF-serratus_M_contig101 216492..217253 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928804.3047094-CDS-F-serratus_M_contig101:216491..2168431622928804.3047094-CDS-F-serratus_M_contig101:216491..216843Fucus serratus maleCDSF-serratus_M_contig101 216492..216843 -
1690962579.8702083-CDS-F-serratus_M_contig101:216491..2168431690962579.8702083-CDS-F-serratus_M_contig101:216491..216843Fucus serratus maleCDSF-serratus_M_contig101 216492..216843 -
1622928804.3169217-CDS-F-serratus_M_contig101:217170..2172531622928804.3169217-CDS-F-serratus_M_contig101:217170..217253Fucus serratus maleCDSF-serratus_M_contig101 217171..217253 -
1690962579.8781798-CDS-F-serratus_M_contig101:217170..2172531690962579.8781798-CDS-F-serratus_M_contig101:217170..217253Fucus serratus maleCDSF-serratus_M_contig101 217171..217253 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928804.3292184-UTR-F-serratus_M_contig101:217253..2172671622928804.3292184-UTR-F-serratus_M_contig101:217253..217267Fucus serratus maleUTRF-serratus_M_contig101 217254..217267 -
1690962579.8855085-UTR-F-serratus_M_contig101:217253..2172671690962579.8855085-UTR-F-serratus_M_contig101:217253..217267Fucus serratus maleUTRF-serratus_M_contig101 217254..217267 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig101.197.1

>prot_F-serratus_M_contig101.197.1 ID=prot_F-serratus_M_contig101.197.1|Name=mRNA_F-serratus_M_contig101.197.1|organism=Fucus serratus male|type=polypeptide|length=145bp
MIGVQQGLDERGAEARARAMTEAKARLRFDRYQLPAWAQTRESFSPGSKP
ASVSAEPRSKNESAAPTAVSTRAGTPDEPSVAAAAHEKERPGEIRGTFAG
FGRPTPTGTDGVDGNDEPGCRQPSDVDTDDDFPQLAALRPPPPPS
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mRNA from alignment at F-serratus_M_contig101:216492..217267-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig101.197.1 ID=mRNA_F-serratus_M_contig101.197.1|Name=mRNA_F-serratus_M_contig101.197.1|organism=Fucus serratus male|type=mRNA|length=776bp|location=Sequence derived from alignment at F-serratus_M_contig101:216492..217267- (Fucus serratus male)
GGGGTGAACGAGGGATGATTGGAGTACAACAAGGCCTAGACGAAAGGGGC
GCAGAGGCACGCGCGAGAGCGATGACCGAGGCAAAGGCGCGGTTGCGGTG
AGAAGTTTGTCTCGAAATCAGATCGGGTGGCATTTCCAATCAAGATCAAC
TCCGCTGGGGTTTTTCAGAGGGTCCTCAGAGGGCGGAGGGTGAGGGGGAG
GAGAAAGACGATTATGTGGTTAGACTCGTGAGGGTCACCAATACCCCCCC
TCCCCCCCCCCGTACTTTGCCGAGATAATGTTTTCTCCCCGCTTCTGGCA
ATGAGTTCACACGAGGGCCCGTTTGTCGCTGGATCAAGGGGGAGCGCAGT
TATTGCCGACAATCCCACTCGTGCGTATGGCGCACCACTGTACCTCTTGT
GTCCCGTCGAAACTATTTCTCTAGATTCGACCGCTACCAGCTGCCTGCTT
GGGCCCAAACACGGGAATCATTCTCCCCAGGATCCAAGCCCGCGAGCGTC
TCGGCTGAACCGAGGAGCAAGAATGAGAGCGCTGCTCCGACGGCGGTCTC
GACCCGCGCAGGAACACCCGACGAACCATCGGTCGCTGCCGCTGCTCACG
AAAAAGAAAGACCAGGGGAAATTCGTGGAACGTTCGCCGGATTTGGTCGG
CCTACACCAACGGGAACTGATGGCGTCGATGGCAACGACGAGCCGGGCTG
CCGGCAACCAAGCGACGTTGACACCGACGATGATTTCCCACAGCTCGCGG
CGCTACGGCCCCCGCCCCCACCATCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig101:216492..217267-

>mRNA_F-serratus_M_contig101.197.1 ID=mRNA_F-serratus_M_contig101.197.1|Name=mRNA_F-serratus_M_contig101.197.1|organism=Fucus serratus male|type=CDS|length=870bp|location=Sequence derived from alignment at F-serratus_M_contig101:216492..217267- (Fucus serratus male)
ATGATTGGAGTACAACAAGGCCTAGACGAAAGGGGCGCAGAGGCACGCGC
GAGAGCGATGACCGAGGCAAAGGCGCGGTTGCGATGATTGGAGTACAACA
AGGCCTAGACGAAAGGGGCGCAGAGGCACGCGCGAGAGCGATGACCGAGG
CAAAGGCGCGGTTGCGATTCGACCGCTACCAGCTGCCTGCTTGGGCCCAA
ACACGGGAATCATTCTCCCCAGGATCCAAGCCCGCGAGCGTCTCGGCTGA
ACCGAGGAGCAAGAATGAGAGCGCTGCTCCGACGGCGGTCTCGACCCGCG
CAGGAACACCCGACGAACCATCGGTCGCTGCCGCTGCTCACGAAAAAGAA
AGACCAGGGGAAATTCGTGGAACGTTCGCCGGATTTGGTCGGCCTACACC
AACGGGAACTGATGGCGTCGATGGCAACGACGAGCCGGGCTGCCGGCAAC
CAAGCGACGTTGACACCGACGATGATTTCCCACAGCTCGCGGCGCTACGG
CCCCCGCCCCCACCATCGATTCGACCGCTACCAGCTGCCTGCTTGGGCCC
AAACACGGGAATCATTCTCCCCAGGATCCAAGCCCGCGAGCGTCTCGGCT
GAACCGAGGAGCAAGAATGAGAGCGCTGCTCCGACGGCGGTCTCGACCCG
CGCAGGAACACCCGACGAACCATCGGTCGCTGCCGCTGCTCACGAAAAAG
AAAGACCAGGGGAAATTCGTGGAACGTTCGCCGGATTTGGTCGGCCTACA
CCAACGGGAACTGATGGCGTCGATGGCAACGACGAGCCGGGCTGCCGGCA
ACCAAGCGACGTTGACACCGACGATGATTTCCCACAGCTCGCGGCGCTAC
GGCCCCCGCCCCCACCATCG
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