mRNA_F-serratus_M_contig101.195.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig101.195.1
Unique NamemRNA_F-serratus_M_contig101.195.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig101.195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig101contigF-serratus_M_contig101:213873..214307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size436
Cds size309
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928804.4243586-UTR-F-serratus_M_contig101:213872..2139981622928804.4243586-UTR-F-serratus_M_contig101:213872..213998Fucus serratus maleUTRF-serratus_M_contig101 213873..213998 +
1690962579.9085484-UTR-F-serratus_M_contig101:213872..2139981690962579.9085484-UTR-F-serratus_M_contig101:213872..213998Fucus serratus maleUTRF-serratus_M_contig101 213873..213998 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928804.4354856-CDS-F-serratus_M_contig101:213998..2143071622928804.4354856-CDS-F-serratus_M_contig101:213998..214307Fucus serratus maleCDSF-serratus_M_contig101 213999..214307 +
1690962579.928308-CDS-F-serratus_M_contig101:213998..2143071690962579.928308-CDS-F-serratus_M_contig101:213998..214307Fucus serratus maleCDSF-serratus_M_contig101 213999..214307 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig101.195.1prot_F-serratus_M_contig101.195.1Fucus serratus malepolypeptideF-serratus_M_contig101 213999..214307 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig101.195.1

>prot_F-serratus_M_contig101.195.1 ID=prot_F-serratus_M_contig101.195.1|Name=mRNA_F-serratus_M_contig101.195.1|organism=Fucus serratus male|type=polypeptide|length=103bp
MRLPVSTLLLPAKRRSLRGSQPTLVDRSSSRSGGEYGITVSAVVRRLSPP
PKSPIALPGGEMTSAVAVFRMGECSTATKKVGVAASATDTFASSTAASSA
TFL
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mRNA from alignment at F-serratus_M_contig101:213873..214307+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig101.195.1 ID=mRNA_F-serratus_M_contig101.195.1|Name=mRNA_F-serratus_M_contig101.195.1|organism=Fucus serratus male|type=mRNA|length=435bp|location=Sequence derived from alignment at F-serratus_M_contig101:213873..214307+ (Fucus serratus male)
CACGAACCTGTCTCACACTTTTCACTGAACTCCCCGCCCTCCAAGTAAAT
ACCGCCGGAGAGGGGAACTCGTCCTTCTGGAACCAGTTGTTTCCCGCTCT
CGCGCTTTCCTGGTGACAGCCAAGAGATGCGGCTACCTGTATCAACATTA
TTACTCCCGGCCAAACGACGATCGCTGAGGGGATCGCAGCCTACCCTCGT
CGACCGTTCATCGTCGCGATCGGGGGGAGAATACGGCATTACGGTGTCAG
CCGTAGTCCGACGCCTCTCACCACCTCCCAAGTCGCCCATTGCACTTCCC
GGGGGCGAAATGACTTCTGCGGTAGCAGTGTTTCGAATGGGGGAATGTTC
TACCGCCACAAAAAAAGTTGGCGTTGCCGCGAGCGCCACCGATACGTTTG
CATCTTCCACAGCAGCTTCATCGGCGACCTTCCTT
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Coding sequence (CDS) from alignment at F-serratus_M_contig101:213873..214307+

>mRNA_F-serratus_M_contig101.195.1 ID=mRNA_F-serratus_M_contig101.195.1|Name=mRNA_F-serratus_M_contig101.195.1|organism=Fucus serratus male|type=CDS|length=618bp|location=Sequence derived from alignment at F-serratus_M_contig101:213873..214307+ (Fucus serratus male)
ATGCGGCTACCTGTATCAACATTATTACTCCCGGCCAAACGACGATCGCT
GAGGGGATCGCAGCCTACCCTCGTCGACCGTTCATCGTCGCGATCGGGGG
GAGAATACGGCATTACGGTGTCAGCCGTAGTCCGACGCCTCTCACCACCT
CCCAAGTCGCCCATTGCACTTCCCGGGGGCGAAATGACTTCTGCGGTAGC
AGTGTTTCGAATGGGGGAATGTTCTACCGCCACAAAAAAAGTTGGCGTTG
CCGCGAGCGCCACCGATACGTTTGCATCTTCCACAGCAGCTTCATCGGCG
ACCTTCCTTATGCGGCTACCTGTATCAACATTATTACTCCCGGCCAAACG
ACGATCGCTGAGGGGATCGCAGCCTACCCTCGTCGACCGTTCATCGTCGC
GATCGGGGGGAGAATACGGCATTACGGTGTCAGCCGTAGTCCGACGCCTC
TCACCACCTCCCAAGTCGCCCATTGCACTTCCCGGGGGCGAAATGACTTC
TGCGGTAGCAGTGTTTCGAATGGGGGAATGTTCTACCGCCACAAAAAAAG
TTGGCGTTGCCGCGAGCGCCACCGATACGTTTGCATCTTCCACAGCAGCT
TCATCGGCGACCTTCCTT
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