mRNA_F-serratus_M_contig101.189.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig101.189.1 vs. uniprot
Match: B7GEF3_PHATC (Translocator of the inner chloroplast envelope membrane 110k n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GEF3_PHATC) HSP 1 Score: 88.6 bits (218), Expect = 7.230e-14 Identity = 55/143 (38.46%), Postives = 81/143 (56.64%), Query Frame = 2 Query: 845 KETLGLDGLLMGEALYQAASPIYSQFVAKTPSEELEDEWSPNRRALDKFIFLCDRMFEVC-DTEEAYSFEMSRVGKIFDLGIPDVKARCAAIAKSLLPKGPGIRRLKW--DKVKAEQLQRARKTLGIDAEVAHEMHKEVYRSE 1264 K L LD L +GEA AA+ Y TP+E+LED P+R+A+DKF+FL +R + +T+EA+SFEM RV K FDL +V R A + + R K ++V + L+RARKTLG+ A ++H + ++ Sbjct: 234 KNVLQLDNLQVGEAHAAAAAEWYRTTCLFTPTEDLEDPSHPDRQAMDKFLFLTERALKQGGETDEAFSFEMKRVAKAFDLSYTEVLERVAETVEPFYQRALKSTRSKLGTNQVSSAMLERARKTLGVSDATAKDLHVACFNAQ 376
BLAST of mRNA_F-serratus_M_contig101.189.1 vs. uniprot
Match: A0A7S4EEP3_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EEP3_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 1.240e-13 Identity = 56/143 (39.16%), Postives = 77/143 (53.85%), Query Frame = 2 Query: 845 KETLGLDGLLMGEALYQAASPIYSQFVAKTPSEELEDEWSPNRRALDKFIFLCDRMFEVCD-TEEAYSFEMSRVGKIFDLGIPDVKARCAAIAKSLLPKGPGIRRLKWD--KVKAEQLQRARKTLGIDAEVAHEMHKEVYRSE 1264 K LGL LL+GEA AA Y TP E+L+D P+R+A+DK +FL +R + D T+ A+ FEM+RV K L + D R A + + + R K KV L+RAR+TLGID + AH+MH + E Sbjct: 227 KTALGLSNLLVGEAHAAAAEEWYRTTCLFTPEEDLDDPDHPDRQAMDKLLFLTERALKQGDETDAAFRFEMARVSKFMKLSLVDGMYRVADVQQPFYARALVSTRAKLGEGKVSEAMLERARQTLGIDDDTAHDMHVACFNDE 369
BLAST of mRNA_F-serratus_M_contig101.189.1 vs. uniprot
Match: A0A0P0YV80_9STRA (Tic110 (Fragment) n=1 Tax=Nitzschia sp. IriIs04 TaxID=1444690 RepID=A0A0P0YV80_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 6.470e-10 Identity = 51/155 (32.90%), Postives = 76/155 (49.03%), Query Frame = 1 Query: 2416 EMARKTGKDSGADVLGATGGQ----LGIEGGAAVTTDVLALIDFYVDNGII-----EKAEGPEGGE---VYPVT-VKQLGTDERMLEALYQNFVVNGFGVEGEQLKRYEAGQSKLAGILGLDPAVKMKIHEEIGGTVIRRFVNQELGKAGKLSAE 2841 +++R GKD G D + + LGI + TD+L LIDFY++NGI E A E + VYP+T +K ++ + E L + F+V F EGEQ KR E + ILG D + + + V FV+ LG+ GK+ + Sbjct: 1 QLSRHRGKDQGRDYFASGTPKPDDVLGIAAEVNIMTDILHLIDFYIENGIAYEEPDEDASPKEPKKMKTVYPMTALKTQALEQNVAEYLLRQFIVGVFQSEGEQAKRLERARHMFGQILGFDKDESDNVRDTMSNQVFDNFVSHVLGRKGKMDQQ 155
BLAST of mRNA_F-serratus_M_contig101.189.1 vs. uniprot
Match: A0A7S4IDD1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IDD1_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 9.530e-7 Identity = 38/101 (37.62%), Postives = 61/101 (60.40%), Query Frame = 1 Query: 2194 DICSETFRKAVAESMGATGIVIDEYRAKLDELAERLGLTVRSAKAMFHAAVRQRMGPMVQQIMYEFERSVLSKGEMARKTGKDSGADVL--GATG-GQLGI 2487 ++ E + V E G G+ E L +L RLG+T +A+ ++ AAV++RM PMV+ ++ E ER++L + ++A+K KD G DV G +G G+LGI Sbjct: 5 EVLGEFKKGVVLEEGGPRGVPRPESGEPLVDLRNRLGVTEDAARELYLAAVKERMVPMVEDLVLELERTMLDQQQLAQKRKKDFGEDVFKSGRSGSGKLGI 105 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig101.189.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig101.189.1 >prot_F-serratus_M_contig101.189.1 ID=prot_F-serratus_M_contig101.189.1|Name=mRNA_F-serratus_M_contig101.189.1|organism=Fucus serratus male|type=polypeptide|length=536bp MKLDPEDRQRINKLATAFELSGDEALEEYEAVVIPIYEELLVGCLSNIMGback to top mRNA from alignment at F-serratus_M_contig101:6141..40905+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig101.189.1 ID=mRNA_F-serratus_M_contig101.189.1|Name=mRNA_F-serratus_M_contig101.189.1|organism=Fucus serratus male|type=mRNA|length=34765bp|location=Sequence derived from alignment at F-serratus_M_contig101:6141..40905+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig101:6141..40905+ >mRNA_F-serratus_M_contig101.189.1 ID=mRNA_F-serratus_M_contig101.189.1|Name=mRNA_F-serratus_M_contig101.189.1|organism=Fucus serratus male|type=CDS|length=3216bp|location=Sequence derived from alignment at F-serratus_M_contig101:6141..40905+ (Fucus serratus male)back to top |