mRNA_F-serratus_M_contig1008.175.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1008.175.1 vs. uniprot
Match: D7FKD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKD6_ECTSI) HSP 1 Score: 467 bits (1201), Expect = 2.680e-148 Identity = 306/661 (46.29%), Postives = 396/661 (59.91%), Query Frame = 2
Query: 188 MGITSTKMCHEITALKAEIITMERRQAYLVKAAVKQAEVRLSIERERAVQEERSRVDQLEELRNVAELENELLKEMVVAEQVNVKLQQKRNQALKWELLRQGGTQEKFDSIIKEVPDLGDTLRADTGHVVHEATAYSMSEAIEHIVSALGDVEEEMRQAFLARDKGGTGILPGSNFKDALRECLPNMPRAERCLLALRFARDEDQSIDYSEFLDFCRRKAQTRESQKFGLVGALAASRSVDPLGVASLGGNRALAATRASKGMTEEQ-----------KLSKNPSAHARGIPRPKQNGREQESGCPEVFKQDFGRQALQAKRKRKGQAFDALVARKVADMIDKRGKDLELMFKRADPAGAGVIPVKEFSECLRALNVVEVAEGN--------KRK---EKMLLTRSDRKGLYRMWAVHGQVHYNDFLRAGRYVNTLPLRYSQFLTTGRRPSLARHNTSPPLPQSTDAQGVDESSAPRLQGRKTDKRKAQAAWAEPQLKKAEEELLPARDEVVLAHLSQVLEEKGEEAFFTEFEERDADGCRTVDEDDFMDAMATFAPEVTTEQALDVF--RARSSEAEGSIAYDKFFEELRKMARPGGFQSGEDVQFRVEDREGRLHWVNGQVVSRDEDSTYTVRFKS--RVPGR--GYVEECGVIEGHLR 2086
MG ++TKM E+TALKA I++ME+ Q+Y+V AAVK+ +L +ER+RAV+EER+R DQLEE R+VA+L+NELL EMV AEQVNVKL ++RN+ALKWELLRQGG QE FDSI KEVP LGDTLRADT V+H + M+EAIEH+V +G+V++++++AFLARD G TG L G+ FKDAL+E P+MPR +R LL LRF R+ DQS+DY EFL+FCR KA++RE K GL GALAA+RS G LA T +G ++ S +P A RG P + G GR + +A + KV+ +I +RG +LE + DP +G IPVK FSECLRA + G KR+ + LT +DRK LYR W V GQV Y DFL A Y N RYS+ T ++A + P TDA + R G KA + E LL R VVL HLS+VL ++GEEA+F FE +D R +DED F+DA+ T APEVT EQ DVF R+R ++ YD+ F++LRK+A+ GGFQSG+ V+ RVE R R+ WV QVVSRD D TYTVRFKS +VPG +++ GV E +R
Sbjct: 1 MGSSNTKMKEEVTALKAHIVSMEKEQSYVVNAAVKKTAEQLVLERDRAVEEERARADQLEEQRSVAQLQNELLTEMVAAEQVNVKLHERRNEALKWELLRQGGCQETFDSIAKEVPVLGDTLRADTADVLHGVAKHDMAEAIEHVVCGIGEVKDDLQEAFLARDTGRTGALGGAAFKDALKESFPDMPREDRQLLMLRFVREVDQSVDYGEFLEFCRHKAESRERLKMGLTGALAATRSAGRFGKCPTTRAGGLACTMPVQGTLGQRPKPFFATALMLSRSDDPPASERGSPFDGWGAGKSRRGT--------GRTDSIFTQGPNDPGVEAPIQEKVSTLISRRGPELEALLLLRDPERSGNIPVKAFSECLRAWASSDSERGGGGAGTRAGKREGPSQAAELTHADRKVLYRRWVVRGQVRYVDFLGASGYFNAPLPRYSEIST-----AVAAAPAAAAAPVVTDAPARHPVTRKRASGSLLSGDKAGMHARNADAGEEETGLLE-RSRVVLVHLSEVLRDEGEEAYFAAFEAQDYGNYRCLDEDGFVDAIETLAPEVTAEQVHDVFLVRSRIEGSDDKANYDELFKDLRKLAQIGGFQSGDAVELRVESRGSRVDWVPAQVVSRDGDGTYTVRFKSPTKVPGATGACMKQSGVSESDMR 647
BLAST of mRNA_F-serratus_M_contig1008.175.1 vs. uniprot
Match: A0A6H5JBT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBT1_9PHAE) HSP 1 Score: 285 bits (728), Expect = 2.690e-85 Identity = 151/238 (63.45%), Postives = 189/238 (79.41%), Query Frame = 2
Query: 209 MCHEITALKAEIITMERRQAYLVKAAVKQAEVRLSIERERAVQEERSRVDQLEELRNVAELENELLKEMVVAEQVNVKLQQKRNQALKWELLRQGGTQEKFDSIIKEVPDLGDTLRADTGHVVHEATAYSMSEAIEHIVSALGDVEEEMRQAFLARDKGGTGILPGSNFKDALRECLPNMPRAERCLLALRFARDEDQSIDYSEFLDFCRRKAQTRESQKFGLVGALAASRSVDPLGV 922
M EITALKA I++ME+ Q+Y+V AAVK+ +L +ERERAV+EER+R DQLEE R+VA+L+NELL EMV AEQVNVKLQ++RN+ALKWELLRQGG QE FDSI KEVP LGDTLRADT V+H + M+EAIEH+V +G+V++ +++AF+ARD G TG L G+ FKDAL+E P+MPR +R LL LRF R+ DQS+DY EFL+FCR KAQ+RE K GL GALAA+RS G+
Sbjct: 1 MKEEITALKAHIVSMEKEQSYVVNAAVKKTAEQLVLERERAVEEERARADQLEEQRSVAQLQNELLTEMVAAEQVNVKLQERRNEALKWELLRQGGCQETFDSIAKEVPVLGDTLRADTADVLHGVAKHDMAEAIEHVVCRIGEVKDGLQEAFVARDTGRTGALGGAAFKDALKESFPDMPREDRQLLMLRFVREVDQSVDYGEFLEFCRHKAQSRERLKMGLTGALAATRSAGIAGI 238
BLAST of mRNA_F-serratus_M_contig1008.175.1 vs. uniprot
Match: A0A6H5JE59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE59_9PHAE) HSP 1 Score: 179 bits (455), Expect = 2.450e-45 Identity = 138/350 (39.43%), Postives = 181/350 (51.71%), Query Frame = 2
Query: 1142 DALVARKVADMIDKRGKDLELMFKRADPAGAGVIPVKEFSECLRALNVVEV--------AEGNKRK---EKMLLTRSDRKGLYRMWAVHGQVHYNDFLRAGRYVNTLPLRYSQFLTTGRRPSLARHNTSPPLPQSTDAQGVDESSAPRLQGRKTDKRKAQAAWAEPQLKKAEEELLPARDEVVLAHLSQVLEEKGEEAFFTEFEERDADGCRTVDEDDFMDAMATFAPEVTTEQALDVF--RARSSEAEGSIAYDKFFE------------------ELRKMARPGGFQSGEDVQFRVEDREGRLHWVNGQVVSRDEDSTYTVRFKS--RVPGR--GYVEECGVIEGHLR 2086
+A V K+A +I +RG +LE + DP +G I VK FSECLRA + G KR+ + LT +DRK LYR WAV GQV Y DFL A N RYS+ T ++A D + R GR KA + E +L AR VVL HLS+VL ++GEEA+F FE +D R +DED F++A+ T APEVT EQ DVF R+R ++ YD+ F+ +LRK+A+ GGFQSG+ V+ RVE R GR+ WV QVVSRD D T+TVRF+S +VPG ++E GV E +R
Sbjct: 46 EAAVQEKLATLISRRGPELEALLLLRDPERSGSISVKTFSECLRAWVSSDSEHGGGGTGTRGGKREGPSQAAELTHADRKVLYRRWAVRGQVRYVDFLGASGCFNAPLPRYSEIST-----AVAAAPXXXXXXVVADKPARHPVTGKRASGRLPSGDKAGMHARNADAGEEETDLF-ARARVVLVHLSEVLRDEGEEAYFAAFEAQDYGNYRCLDEDGFVNAIETLAPEVTAEQVHDVFLVRSRIEGSDDKANYDELFKLGCAFPYPSPRPSITARKDLRKLAQIGGFQSGDAVELRVESRGGRVDWVPAQVVSRDGDGTFTVRFRSPTKVPGATGARMKESGVSESDMR 389
BLAST of mRNA_F-serratus_M_contig1008.175.1 vs. uniprot
Match: A0A835Z1F4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1F4_9STRA) HSP 1 Score: 136 bits (343), Expect = 4.480e-29 Identity = 82/188 (43.62%), Postives = 122/188 (64.89%), Query Frame = 2
Query: 353 VDQLEELRNVAELENELLKEMVVAEQVNVKLQQKRNQALKWELLRQGGTQEKFDSIIKEVPDLGDTLRADTGHVVHEATAYSMSEAIEHIVSAL-GDVEEEMRQAFLARDKGGTGILPGSNFKDALRECLPNMPRAERCLLALRFARDEDQSIDYSEFLDFCRRKAQTRESQKFGLVGALAASRSVDP 913
V++ ++ V +L+N++L EMV AEQVN +LQQ+R++ALKWELLR+G + +K +I +E P+LG TL + ++MS A+E + + + G ++ A ARD+GG G L +FKDALRE P +PR R LLALRFAR+ED ++ Y EFL+F +++A R Q G + AL A+ S+ P
Sbjct: 2 VEKAQQQATVLQLKNDILTEMVAAEQVNARLQQRRSEALKWELLRRGTSADKLAAIAREAPELGATL---SRSAPLPPAPHNMSTAVEAMGALMDGPRRADVETALGARDRGGAGWLSAVDFKDALREAAPELPREGRQLLALRFAREEDDTVPYVEFLEFFKQRAARRHLQ--GAMTALRATASLSP 184 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1008.175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1008.175.1 >prot_F-serratus_M_contig1008.175.1 ID=prot_F-serratus_M_contig1008.175.1|Name=mRNA_F-serratus_M_contig1008.175.1|organism=Fucus serratus male|type=polypeptide|length=916bp MGITSTKMCHEITALKAEIITMERRQAYLVKAAVKQAEVRLSIERERAVQback to top mRNA from alignment at F-serratus_M_contig1008:96764..108411+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1008.175.1 ID=mRNA_F-serratus_M_contig1008.175.1|Name=mRNA_F-serratus_M_contig1008.175.1|organism=Fucus serratus male|type=mRNA|length=11648bp|location=Sequence derived from alignment at F-serratus_M_contig1008:96764..108411+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1008:96764..108411+ >mRNA_F-serratus_M_contig1008.175.1 ID=mRNA_F-serratus_M_contig1008.175.1|Name=mRNA_F-serratus_M_contig1008.175.1|organism=Fucus serratus male|type=CDS|length=5496bp|location=Sequence derived from alignment at F-serratus_M_contig1008:96764..108411+ (Fucus serratus male)back to top |