mRNA_F-serratus_M_contig1008.169.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1008.169.1
Unique NamemRNA_F-serratus_M_contig1008.169.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1008.169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1008contigF-serratus_M_contig1008:4443..8209 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1595
Cds size846
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1008.169.1prot_F-serratus_M_contig1008.169.1Fucus serratus malepolypeptideF-serratus_M_contig1008 5138..8155 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928799.8784692-UTR-F-serratus_M_contig1008:4442..51371622928799.8784692-UTR-F-serratus_M_contig1008:4442..5137Fucus serratus maleUTRF-serratus_M_contig1008 4443..5137 -
1690962577.456514-UTR-F-serratus_M_contig1008:4442..51371690962577.456514-UTR-F-serratus_M_contig1008:4442..5137Fucus serratus maleUTRF-serratus_M_contig1008 4443..5137 -
1622928799.9548457-UTR-F-serratus_M_contig1008:8155..82091622928799.9548457-UTR-F-serratus_M_contig1008:8155..8209Fucus serratus maleUTRF-serratus_M_contig1008 8156..8209 -
1690962577.538981-UTR-F-serratus_M_contig1008:8155..82091690962577.538981-UTR-F-serratus_M_contig1008:8155..8209Fucus serratus maleUTRF-serratus_M_contig1008 8156..8209 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928799.8942719-CDS-F-serratus_M_contig1008:5137..55481622928799.8942719-CDS-F-serratus_M_contig1008:5137..5548Fucus serratus maleCDSF-serratus_M_contig1008 5138..5548 -
1690962577.468211-CDS-F-serratus_M_contig1008:5137..55481690962577.468211-CDS-F-serratus_M_contig1008:5137..5548Fucus serratus maleCDSF-serratus_M_contig1008 5138..5548 -
1622928799.909312-CDS-F-serratus_M_contig1008:5947..61841622928799.909312-CDS-F-serratus_M_contig1008:5947..6184Fucus serratus maleCDSF-serratus_M_contig1008 5948..6184 -
1690962577.489885-CDS-F-serratus_M_contig1008:5947..61841690962577.489885-CDS-F-serratus_M_contig1008:5947..6184Fucus serratus maleCDSF-serratus_M_contig1008 5948..6184 -
1622928799.923452-CDS-F-serratus_M_contig1008:7122..72381622928799.923452-CDS-F-serratus_M_contig1008:7122..7238Fucus serratus maleCDSF-serratus_M_contig1008 7123..7238 -
1690962577.508763-CDS-F-serratus_M_contig1008:7122..72381690962577.508763-CDS-F-serratus_M_contig1008:7122..7238Fucus serratus maleCDSF-serratus_M_contig1008 7123..7238 -
1622928799.9370544-CDS-F-serratus_M_contig1008:8073..81551622928799.9370544-CDS-F-serratus_M_contig1008:8073..8155Fucus serratus maleCDSF-serratus_M_contig1008 8074..8155 -
1690962577.5248036-CDS-F-serratus_M_contig1008:8073..81551690962577.5248036-CDS-F-serratus_M_contig1008:8073..8155Fucus serratus maleCDSF-serratus_M_contig1008 8074..8155 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1008.169.1

>prot_F-serratus_M_contig1008.169.1 ID=prot_F-serratus_M_contig1008.169.1|Name=mRNA_F-serratus_M_contig1008.169.1|organism=Fucus serratus male|type=polypeptide|length=282bp
MAGAEEASPGGERGVDVGGSSAGPTQGGGDLLSGFGDEKASPSEGTGSGS
GLDMLVMSPPITGVAEKGNKDAVSRRERPTGDDLLTGGITNGGKSVQVST
TSPDVSLLDWAAGHGGESKASSGSEGADRSGMDRSEMLQQKVGGWQQQQQ
QQQMLQRGGVFGFQGTSQNIPGAGAGAGLSIAGTIPSMMQQQQQQYASGM
FLAQQRQAGRVGVGMMRTGSSGQGKTIPDPLSSWGPGSLPSVGGQRGHPQ
TQQNKVNDEEKVPKASDSFSFVRDAMQDSIK*
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mRNA from alignment at F-serratus_M_contig1008:4443..8209-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1008.169.1 ID=mRNA_F-serratus_M_contig1008.169.1|Name=mRNA_F-serratus_M_contig1008.169.1|organism=Fucus serratus male|type=mRNA|length=3767bp|location=Sequence derived from alignment at F-serratus_M_contig1008:4443..8209- (Fucus serratus male)
GGGGGATCGTCATCCTGCTCCGAAGTTGGCCTCGGGGGTTCGGGGTTCGC
GTTCATGGCGGGCGCGGAGGAAGCGTCTCCCGGGGGGGAGAGGGGGGTTG
ACGTCGGCGGCAGTTCGGCCGGTCCGACCCAGGGAGGTGAGCGAAAGGCT
GTGTTACGTACCAGTAGTAATGTACTATACTGTAATGTAATGTAATGTAA
TGTAATGCCTGCATTAGTAATAGTGATTTGCGTGTTAAATGTATTGGGAG
TTTCGTCGAGTGGTCTAGTAGGTAACCTGCACACCTTCTAGTGCGGAAGT
CGTGAGTTCGATTCTTGCGAAAGTAAGATTTGCGTTTAATCTTCTTCCTT
AATAATAGCGGAAAGCGTGAGATCGTGAGTAGGTAAAAATTCAACCATTG
ATTGACGAGTTGTAAGATTGCTGAACTTGCATCGCGACAAAGAAATGTAA
GGCGTGAACGGGGGAGAGATGGGAAGATCCTTTGTGACCACAGGCAGGAT
GGTAATCATGAGGTCCATCGGCTAGAAGTGAGATAAAAGAAAAGGAAAAA
AAAATATCTCGTGCGCTGGGTTCTTTGTGTGTTATCAGAGTGTGTCGACA
ATGCGGGGAAAAGGAAATGTTCAAATGTAATGAAAATAAAAAATAAAATA
AAATGTGCGCGCTTCTATCTTGTACAGTGTGTTAGCATCCTTATAAGGGT
TCATATTTTGGAGGGGGGGGGATGGGGGGGTGCGGTGATTCCTATACTAC
ATCAAAATAAGTGTTCGGACTGAATTTTTTTTTTTAATTCCTATTTTGCT
TTTTGTCTCTTGCTCTTCCTTCACCCTCACAAATGACACTACACCGAAAC
GCCTGTTTTGAGTGTTTATTTTACTTGTTTCGCATATTTGGCACATTAAT
CCACCTCCTGATTGGCTTTGCGATGCGCTTATTTTGTGGCGATATTTGCG
GGATTGAAATCTAAAACTCAGGCGGCGATTTGCTGTCTGGTTTTGGAGAC
GAGAAAGCGTCTCCGAGCGAGGGTACTGGGAGTGGAAGCGGATTGGACAT
GCTGGTTATGTCCCCGCCAATTACAGGGGTGGCTGAGGTACGTCAGGTAC
TAGATACTAGATGCTATATATACACTATGTAATGCTTCATTAGAGCTATA
TTTATGGCGGTTTTAAACAAAGAAATGGACGCCGGCACGGAACTCGGGAG
GAATCCTGTAAGTAAGCACCATATTCAGACTGAGTACAGAGATGAGCAGA
CTGGCGCGGGACGGGACTGTCGAACCCGTCCCCGTGAGACCAAATTCTCA
GGCGCGAACGCGGACGGGGAAAAATTCGTTTTCCCTGTTCGGCTGACCAC
GAGCAGGACTGGCAAACTTACCCGGTTGATCCATACTCTTTACTATATGT
AATGACTATACGCGTAGTGTACTGGTGCCTGTTACTGTTGAAAATGGTTT
GGTGTCAAATGCTACAAGGTGGTTAATAATAGTGTCGCTTGAGTGGTCTA
GTAGGTAACCTGCACACCTGCTTGTGCGGAGGTCGGGAGTTCGATTCTTG
GCTAAATCAGGATTTTAATTCTTGCTTCCGTAGCGGAAAGCGTGACAACG
TGAGTAGGTAAAATTCAACCATCGGTTGACGAGTTGTAAGAGTGCTGAAC
TTGCATCGCAATAAAAATCGTAGGCGAGAACCGGGGAGAGATAGGAATAT
CCTTAGTCACCACAAGCAGGAGGAAATGAGGCCCATCGGCTATAAGTGAG
ATGGGAAAAAAAAAGGAAAAAGTACAATAACGTATTAGTATAAATAGTCG
TGTAAAGGTGTTAACATAATACAGTTACTTTTTGTATCGCGTTTCGGTTG
ATGGGTTGATGAGAATTATTTTTTGCCCTTTTGCCGTTTCGATAGTGCAT
ATACACACAGCTCTAAACAAGAAAAACCTCTTTTATTATGCGCCAACCCC
CACCACCACCACCACCACCCCCACCACCACCCCCCCCCCCCCCCGACCCC
AAAACGATAATAAACTATTACATAGAAGGGCAACAAGGACGCTGTTAGTA
GGCGCGAGAGACCAACCGGTGACGATCTGCTGACGGGCGGCATTACCAAC
GGAGGCAAAAGCGTCCAGGTTTCCACGACGTCTCCAGACGTTTCGCTGCT
GGACTGGGCGGCCGGCCACGGGGGAGAAAGCAAGGCTTCCTCTGGGTCCG
AAGGCGCCGACAGATCGGGGATGGATCGTAGCGAGATGCTGCAGCAGAAG
GTGGGTGGGTGGGTCGCCTTTAAGGGTGGTAAGATATTAAGGGTAAAGTG
CCTAACACTGTGCTGTTGGGATAATGGTGTGTGTTTGTGCGTTTGTGTGT
TTTGTTGGTTTTCATTTTGTTTTTATGGGGGTGGGGAGGGGTTGTTTTTT
TTTTGTCCCTTTTTCTTCTTCATGTTTTGTGTATTTTTTGTGTTGTTAAT
ATCCTGACACCCCCCACCTTCTTTATCTATTCATTTATATAAATAGAGAT
TGAAATGCCTTTTTATTTTTATTTTATTTTATTTTTCAGCGGGGGAAGAA
CGGCTTAAACGACTTGACTTCGTCTTTTTTAGACCCCTCACCCACGACTT
GTTGTGTGGTCGTCATCGGCGCATTCGCGATCGGAAGGTGATGTTAATGC
AGCAGCAGCAGCAGCAGCAGCAACAACAACAACAGATGTTGCAGCGAGGA
GGCGTGTTCGGTTTTCAGGGGACTTCTCAAAATATCCCCGGGGCAGGGGC
AGGGGCAGGACTTAGTATCGCGGGGACGATCCCCTCGATGATGCAACAAC
AACAACAACAGTATGCTTCCGGAATGTTCCTGGCGCAGCAGCGACAGGCT
GGCCGCGTCGGAGTCGGTATGATGAGGACCGGCTCTTCGGGCCAAGGGAA
GACGATCCCAGACCCTCTTTCTTCCTGGGGTCCCGGGTCGTTGCCTTCCG
TGGGAGGTCAGCGGGGACATCCGCAAACGCAACAGAATAAAGTTAATGAC
GAGGAGAAGGTGCCCAAAGCTTCCGACTCGTTCAGCTTTGTGAGGGATGC
CATGCAGGACTCCATCAAGTGAAACGTTTTTGTGGCTCGATCAAGAAGTG
AATGCCGCAAGCGATTATACAGCAGGCGATAAACAGGGCAGTACACCTCT
TTTCCCCCCCCCCCCCCCCACCCACCTCTTTTTTTCGCATGTGTGGAGAG
GCGTTGTTGGGACGGGGTACATATATATATATTGATCCCCCGTTGGCCGT
GCTTAGCTGGGTATGCCACCCAGTACTTCTGAAGTGGGTTCTGTCTTTGT
TTGGGGAGGCCGTTGATGTTTTTCGATCGACGGCGTTTGGCCGCCGAATA
TCCTCTGAAACTTAATAGTCTCAAACGGTATGTTTGTCTAATCGTCTTTG
TTATGTAGTCGGCTGCCACGCCACCACGCTGGATTGAACGGTTGAATGGT
TTTGTTATGGAACAGGAGGCATTTAACCTTTCGAACAAAAATATGATGAG
TTTGTTCGTCGACCTGATTTGAGACCTCCTTCTACCGTTTTTTTTGCGCA
TTTTTGTAGTAAATTATCTTCTCTTTTTTTATAGGAGAAACAAAAAAAAC
ACGTGATAATCATCGAACGCTTCATTTTTTACTACAACGACTATGACGGC
GACTTAACAGTAACATAGGTTTCTTTTTATCTGGCGGCATTTGGGGGCGG
AGCGATGTCGCGTGCCATGTAACACGATTCACCGAAATGTTTTTATTTCT
ATGGACGTTCGCTCCTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1008:4443..8209-

>mRNA_F-serratus_M_contig1008.169.1 ID=mRNA_F-serratus_M_contig1008.169.1|Name=mRNA_F-serratus_M_contig1008.169.1|organism=Fucus serratus male|type=CDS|length=1692bp|location=Sequence derived from alignment at F-serratus_M_contig1008:4443..8209- (Fucus serratus male)
ATGGCGGGCGCGGAGGAAGCGTCTCCCGGGGGGGAGAGGGGGGTTGACGT
CGGCGGCAGTTCGGCCGGTCCGACCCAGGGAGATGGCGGGCGCGGAGGAA
GCGTCTCCCGGGGGGGAGAGGGGGGTTGACGTCGGCGGCAGTTCGGCCGG
TCCGACCCAGGGAGGCGGCGATTTGCTGTCTGGTTTTGGAGACGAGAAAG
CGTCTCCGAGCGAGGGTACTGGGAGTGGAAGCGGATTGGACATGCTGGTT
ATGTCCCCGCCAATTACAGGGGTGGCTGAGGCGGCGATTTGCTGTCTGGT
TTTGGAGACGAGAAAGCGTCTCCGAGCGAGGGTACTGGGAGTGGAAGCGG
ATTGGACATGCTGGTTATGTCCCCGCCAATTACAGGGGTGGCTGAGAAGG
GCAACAAGGACGCTGTTAGTAGGCGCGAGAGACCAACCGGTGACGATCTG
CTGACGGGCGGCATTACCAACGGAGGCAAAAGCGTCCAGGTTTCCACGAC
GTCTCCAGACGTTTCGCTGCTGGACTGGGCGGCCGGCCACGGGGGAGAAA
GCAAGGCTTCCTCTGGGTCCGAAGGCGCCGACAGATCGGGGATGGATCGT
AGCGAGATGCTGCAGCAGAAGGTGGGTGGGTGGAAGGGCAACAAGGACGC
TGTTAGTAGGCGCGAGAGACCAACCGGTGACGATCTGCTGACGGGCGGCA
TTACCAACGGAGGCAAAAGCGTCCAGGTTTCCACGACGTCTCCAGACGTT
TCGCTGCTGGACTGGGCGGCCGGCCACGGGGGAGAAAGCAAGGCTTCCTC
TGGGTCCGAAGGCGCCGACAGATCGGGGATGGATCGTAGCGAGATGCTGC
AGCAGAAGGTGGGTGGGTGGCAGCAGCAGCAACAACAACAACAGATGTTG
CAGCGAGGAGGCGTGTTCGGTTTTCAGGGGACTTCTCAAAATATCCCCGG
GGCAGGGGCAGGGGCAGGACTTAGTATCGCGGGGACGATCCCCTCGATGA
TGCAACAACAACAACAACAGTATGCTTCCGGAATGTTCCTGGCGCAGCAG
CGACAGGCTGGCCGCGTCGGAGTCGGTATGATGAGGACCGGCTCTTCGGG
CCAAGGGAAGACGATCCCAGACCCTCTTTCTTCCTGGGGTCCCGGGTCGT
TGCCTTCCGTGGGAGGTCAGCGGGGACATCCGCAAACGCAACAGAATAAA
GTTAATGACGAGGAGAAGGTGCCCAAAGCTTCCGACTCGTTCAGCTTTGT
GAGGGATGCCATGCAGGACTCCATCAAGTGACAGCAGCAGCAACAACAAC
AACAGATGTTGCAGCGAGGAGGCGTGTTCGGTTTTCAGGGGACTTCTCAA
AATATCCCCGGGGCAGGGGCAGGGGCAGGACTTAGTATCGCGGGGACGAT
CCCCTCGATGATGCAACAACAACAACAACAGTATGCTTCCGGAATGTTCC
TGGCGCAGCAGCGACAGGCTGGCCGCGTCGGAGTCGGTATGATGAGGACC
GGCTCTTCGGGCCAAGGGAAGACGATCCCAGACCCTCTTTCTTCCTGGGG
TCCCGGGTCGTTGCCTTCCGTGGGAGGTCAGCGGGGACATCCGCAAACGC
AACAGAATAAAGTTAATGACGAGGAGAAGGTGCCCAAAGCTTCCGACTCG
TTCAGCTTTGTGAGGGATGCCATGCAGGACTCCATCAAGTGA
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