mRNA_F-serratus_M_contig1007.167.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1007.167.1
Unique NamemRNA_F-serratus_M_contig1007.167.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1007.167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1007contigF-serratus_M_contig1007:243835..244135 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size303
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928799.0790272-CDS-F-serratus_M_contig1007:243834..2441341622928799.0790272-CDS-F-serratus_M_contig1007:243834..244134Fucus serratus maleCDSF-serratus_M_contig1007 243835..244134 +
1690962577.0151744-CDS-F-serratus_M_contig1007:243834..2441341690962577.0151744-CDS-F-serratus_M_contig1007:243834..244134Fucus serratus maleCDSF-serratus_M_contig1007 243835..244134 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1007.167.1prot_F-serratus_M_contig1007.167.1Fucus serratus malepolypeptideF-serratus_M_contig1007 243835..244134 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1007.167.1

>prot_F-serratus_M_contig1007.167.1 ID=prot_F-serratus_M_contig1007.167.1|Name=mRNA_F-serratus_M_contig1007.167.1|organism=Fucus serratus male|type=polypeptide|length=100bp
VPFTNLKYKNHLLVVRLHTRVVSNAIIPSGIPTWDIPRLSTDPNVLTLVY
PFCRALACNKRCGKITHSTRGYIMLNIRSSSRMRKMLPDVKVVIAAYRHG
back to top

mRNA from alignment at F-serratus_M_contig1007:243835..244135+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1007.167.1 ID=mRNA_F-serratus_M_contig1007.167.1|Name=mRNA_F-serratus_M_contig1007.167.1|organism=Fucus serratus male|type=mRNA|length=301bp|location=Sequence derived from alignment at F-serratus_M_contig1007:243835..244135+ (Fucus serratus male)
GTTCCCTTCACTAACTTGAAGTATAAGAACCATTTACTTGTTGTAAGACT
GCACACCAGGGTAGTCTCAAACGCTATCATTCCAAGTGGGATTCCCACAT
GGGACATCCCTCGGCTCTCTACAGACCCAAATGTCCTAACATTAGTCTAC
CCTTTTTGTCGTGCCCTTGCCTGCAACAAGCGGTGCGGCAAAATAACACA
TTCGACAAGAGGATATATAATGCTCAACATACGCTCATCATCGCGCATGC
GGAAAATGCTACCTGACGTCAAAGTTGTCATCGCAGCATATCGTCACGGC
A
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1007:243835..244135+

>mRNA_F-serratus_M_contig1007.167.1 ID=mRNA_F-serratus_M_contig1007.167.1|Name=mRNA_F-serratus_M_contig1007.167.1|organism=Fucus serratus male|type=CDS|length=600bp|location=Sequence derived from alignment at F-serratus_M_contig1007:243835..244135+ (Fucus serratus male)
GTTCCCTTCACTAACTTGAAGTATAAGAACCATTTACTTGTTGTAAGACT
GCACACCAGGGTAGTCTCAAACGCTATCATTCCAAGTGGGATTCCCACAT
GGGACATCCCTCGGCTCTCTACAGACCCAAATGTCCTAACATTAGTCTAC
CCTTTTTGTCGTGCCCTTGCCTGCAACAAGCGGTGCGGCAAAATAACACA
TTCGACAAGAGGATATATAATGCTCAACATACGCTCATCATCGCGCATGC
GGAAAATGCTACCTGACGTCAAAGTTGTCATCGCAGCATATCGTCACGGC
GTTCCCTTCACTAACTTGAAGTATAAGAACCATTTACTTGTTGTAAGACT
GCACACCAGGGTAGTCTCAAACGCTATCATTCCAAGTGGGATTCCCACAT
GGGACATCCCTCGGCTCTCTACAGACCCAAATGTCCTAACATTAGTCTAC
CCTTTTTGTCGTGCCCTTGCCTGCAACAAGCGGTGCGGCAAAATAACACA
TTCGACAAGAGGATATATAATGCTCAACATACGCTCATCATCGCGCATGC
GGAAAATGCTACCTGACGTCAAAGTTGTCATCGCAGCATATCGTCACGGC
back to top