mRNA_F-serratus_M_contig1007.164.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1007.164.1
Unique NamemRNA_F-serratus_M_contig1007.164.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1007.164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1007contigF-serratus_M_contig1007:63112..63692 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size582
Cds size408
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928799.0085921-CDS-F-serratus_M_contig1007:63111..635191622928799.0085921-CDS-F-serratus_M_contig1007:63111..63519Fucus serratus maleCDSF-serratus_M_contig1007 63112..63519 +
1690962576.99568-CDS-F-serratus_M_contig1007:63111..635191690962576.99568-CDS-F-serratus_M_contig1007:63111..63519Fucus serratus maleCDSF-serratus_M_contig1007 63112..63519 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928799.02577-UTR-F-serratus_M_contig1007:63519..636921622928799.02577-UTR-F-serratus_M_contig1007:63519..63692Fucus serratus maleUTRF-serratus_M_contig1007 63520..63692 +
1690962577.0056672-UTR-F-serratus_M_contig1007:63519..636921690962577.0056672-UTR-F-serratus_M_contig1007:63519..63692Fucus serratus maleUTRF-serratus_M_contig1007 63520..63692 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1007.164.1prot_F-serratus_M_contig1007.164.1Fucus serratus malepolypeptideF-serratus_M_contig1007 63112..63519 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1007.164.1

>prot_F-serratus_M_contig1007.164.1 ID=prot_F-serratus_M_contig1007.164.1|Name=mRNA_F-serratus_M_contig1007.164.1|organism=Fucus serratus male|type=polypeptide|length=136bp
ANELHRCGGPFFLWWAGDGGRGVCSSDVPNLVQKRLSAAQTQVTHATRST
RAHQIAARVVCGSEVDIVAGISARDSAALEKSFLQLVFEVLCGATSTQVQ
HLDCRRPCSLYTFANEPQPPVRVSGVFRAFSSGLW*
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mRNA from alignment at F-serratus_M_contig1007:63112..63692+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1007.164.1 ID=mRNA_F-serratus_M_contig1007.164.1|Name=mRNA_F-serratus_M_contig1007.164.1|organism=Fucus serratus male|type=mRNA|length=581bp|location=Sequence derived from alignment at F-serratus_M_contig1007:63112..63692+ (Fucus serratus male)
GCGAACGAGTTGCATCGGTGCGGTGGCCCATTTTTTTTGTGGTGGGCTGG
GGACGGCGGCCGTGGTGTTTGCTCATCGGATGTGCCTAATCTGGTGCAAA
AGCGTCTCTCAGCCGCTCAAACGCAGGTCACTCACGCCACACGAAGCACC
CGAGCTCACCAAATTGCAGCCAGAGTCGTATGTGGGAGTGAGGTAGACAT
TGTCGCTGGAATTAGCGCGCGGGACAGCGCTGCGCTGGAGAAATCGTTTC
TTCAGCTGGTATTTGAAGTCTTGTGCGGTGCTACATCGACCCAAGTTCAA
CACCTCGACTGCCGGCGACCGTGCTCGTTGTACACTTTTGCGAACGAACC
ACAGCCACCAGTCAGAGTTAGCGGAGTTTTTCGGGCTTTTTCCAGTGGTC
TATGGTGATGGCACTTTCAAGACAGCACCGTTGACTTTGTTGAATCCGCA
GAGCAAGATGACACCCGAGATTTGGCTCAAATCCTCCCCAGATAGACACA
ATTTTAGATAATGCTCAGAAGCGAATGACTTGTTTGTACTGTTGTACTAG
ACTAGTACAGCAGTACAAAAAAACGTAGCTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1007:63112..63692+

>mRNA_F-serratus_M_contig1007.164.1 ID=mRNA_F-serratus_M_contig1007.164.1|Name=mRNA_F-serratus_M_contig1007.164.1|organism=Fucus serratus male|type=CDS|length=816bp|location=Sequence derived from alignment at F-serratus_M_contig1007:63112..63692+ (Fucus serratus male)
GCGAACGAGTTGCATCGGTGCGGTGGCCCATTTTTTTTGTGGTGGGCTGG
GGACGGCGGCCGTGGTGTTTGCTCATCGGATGTGCCTAATCTGGTGCAAA
AGCGTCTCTCAGCCGCTCAAACGCAGGTCACTCACGCCACACGAAGCACC
CGAGCTCACCAAATTGCAGCCAGAGTCGTATGTGGGAGTGAGGTAGACAT
TGTCGCTGGAATTAGCGCGCGGGACAGCGCTGCGCTGGAGAAATCGTTTC
TTCAGCTGGTATTTGAAGTCTTGTGCGGTGCTACATCGACCCAAGTTCAA
CACCTCGACTGCCGGCGACCGTGCTCGTTGTACACTTTTGCGAACGAACC
ACAGCCACCAGTCAGAGTTAGCGGAGTTTTTCGGGCTTTTTCCAGTGGTC
TATGGTGAGCGAACGAGTTGCATCGGTGCGGTGGCCCATTTTTTTTGTGG
TGGGCTGGGGACGGCGGCCGTGGTGTTTGCTCATCGGATGTGCCTAATCT
GGTGCAAAAGCGTCTCTCAGCCGCTCAAACGCAGGTCACTCACGCCACAC
GAAGCACCCGAGCTCACCAAATTGCAGCCAGAGTCGTATGTGGGAGTGAG
GTAGACATTGTCGCTGGAATTAGCGCGCGGGACAGCGCTGCGCTGGAGAA
ATCGTTTCTTCAGCTGGTATTTGAAGTCTTGTGCGGTGCTACATCGACCC
AAGTTCAACACCTCGACTGCCGGCGACCGTGCTCGTTGTACACTTTTGCG
AACGAACCACAGCCACCAGTCAGAGTTAGCGGAGTTTTTCGGGCTTTTTC
CAGTGGTCTATGGTGA
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