mRNA_F-serratus_M_contig1005.161.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1005.161.1
Unique NamemRNA_F-serratus_M_contig1005.161.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1005.161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1005contigF-serratus_M_contig1005:202064..202459 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size396
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1005.161.1prot_F-serratus_M_contig1005.161.1Fucus serratus malepolypeptideF-serratus_M_contig1005 202143..202442 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928796.5678315-UTR-F-serratus_M_contig1005:202063..2021421622928796.5678315-UTR-F-serratus_M_contig1005:202063..202142Fucus serratus maleUTRF-serratus_M_contig1005 202064..202142 -
1690962576.0319805-UTR-F-serratus_M_contig1005:202063..2021421690962576.0319805-UTR-F-serratus_M_contig1005:202063..202142Fucus serratus maleUTRF-serratus_M_contig1005 202064..202142 -
1622928796.5927563-UTR-F-serratus_M_contig1005:202442..2024591622928796.5927563-UTR-F-serratus_M_contig1005:202442..202459Fucus serratus maleUTRF-serratus_M_contig1005 202443..202459 -
1690962576.0528612-UTR-F-serratus_M_contig1005:202442..2024591690962576.0528612-UTR-F-serratus_M_contig1005:202442..202459Fucus serratus maleUTRF-serratus_M_contig1005 202443..202459 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928796.5825574-CDS-F-serratus_M_contig1005:202142..2024421622928796.5825574-CDS-F-serratus_M_contig1005:202142..202442Fucus serratus maleCDSF-serratus_M_contig1005 202143..202442 -
1690962576.0415268-CDS-F-serratus_M_contig1005:202142..2024421690962576.0415268-CDS-F-serratus_M_contig1005:202142..202442Fucus serratus maleCDSF-serratus_M_contig1005 202143..202442 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1005.161.1

>prot_F-serratus_M_contig1005.161.1 ID=prot_F-serratus_M_contig1005.161.1|Name=mRNA_F-serratus_M_contig1005.161.1|organism=Fucus serratus male|type=polypeptide|length=100bp
MVTKRYTKVSNGSHHGDNPLLRPPGIQITTKSYATMAPSIVETVHQTSLL
HIETNLDRLGLLSPIHDQRSQQQSRQTCAQISTKIGKIEIPRSMVRWRP*
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mRNA from alignment at F-serratus_M_contig1005:202064..202459-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1005.161.1 ID=mRNA_F-serratus_M_contig1005.161.1|Name=mRNA_F-serratus_M_contig1005.161.1|organism=Fucus serratus male|type=mRNA|length=396bp|location=Sequence derived from alignment at F-serratus_M_contig1005:202064..202459- (Fucus serratus male)
ATATTATTGCTAATCTAATGGTCACAAAGCGGTATACGAAGGTCAGCAAC
GGGTCACATCATGGTGACAACCCGCTACTCAGACCACCAGGGATCCAAAT
CACGACAAAAAGCTATGCGACAATGGCTCCGAGCATTGTCGAAACGGTTC
ATCAAACCTCCTTACTTCATATCGAGACCAACCTCGATCGACTCGGATTG
TTGTCGCCTATCCACGACCAGCGTTCTCAGCAACAAAGCAGACAAACTTG
CGCTCAAATCAGTACAAAAATAGGGAAAATTGAAATACCGAGGTCCATGG
TGCGGTGGAGGCCTTGAGCTGGTGAAGCCGGCGCGCGAGCCAGCATCCAG
CCGTCCAAAGCCCTGTGCATCCCTGAAAAATTCTCACGAATCTTGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1005:202064..202459-

>mRNA_F-serratus_M_contig1005.161.1 ID=mRNA_F-serratus_M_contig1005.161.1|Name=mRNA_F-serratus_M_contig1005.161.1|organism=Fucus serratus male|type=CDS|length=600bp|location=Sequence derived from alignment at F-serratus_M_contig1005:202064..202459- (Fucus serratus male)
ATGGTCACAAAGCGGTATACGAAGGTCAGCAACGGGTCACATCATGGTGA
CAACCCGCTACTCAGACCACCAGGGATCCAAATCACGACAAAAAGCTATG
CGACAATGGCTCCGAGCATTGTCGAAACGGTTCATCAAACCTCCTTACTT
CATATCGAGACCAACCTCGATCGACTCGGATTGTTGTCGCCTATCCACGA
CCAGCGTTCTCAGCAACAAAGCAGACAAACTTGCGCTCAAATCAGTACAA
AAATAGGGAAAATTGAAATACCGAGGTCCATGGTGCGGTGGAGGCCTTGA
ATGGTCACAAAGCGGTATACGAAGGTCAGCAACGGGTCACATCATGGTGA
CAACCCGCTACTCAGACCACCAGGGATCCAAATCACGACAAAAAGCTATG
CGACAATGGCTCCGAGCATTGTCGAAACGGTTCATCAAACCTCCTTACTT
CATATCGAGACCAACCTCGATCGACTCGGATTGTTGTCGCCTATCCACGA
CCAGCGTTCTCAGCAACAAAGCAGACAAACTTGCGCTCAAATCAGTACAA
AAATAGGGAAAATTGAAATACCGAGGTCCATGGTGCGGTGGAGGCCTTGA
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