mRNA_F-serratus_M_contig1005.158.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1005.158.1
Unique NamemRNA_F-serratus_M_contig1005.158.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1005.158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1005contigF-serratus_M_contig1005:159662..160805 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size344
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928796.440986-CDS-F-serratus_M_contig1005:159663..1599281622928796.440986-CDS-F-serratus_M_contig1005:159663..159928Fucus serratus maleCDSF-serratus_M_contig1005 159664..159928 -
1690962575.9935591-CDS-F-serratus_M_contig1005:159663..1599281690962575.9935591-CDS-F-serratus_M_contig1005:159663..159928Fucus serratus maleCDSF-serratus_M_contig1005 159664..159928 -
1622928796.45545-CDS-F-serratus_M_contig1005:160728..1608051622928796.45545-CDS-F-serratus_M_contig1005:160728..160805Fucus serratus maleCDSF-serratus_M_contig1005 160729..160805 -
1690962576.0027697-CDS-F-serratus_M_contig1005:160728..1608051690962576.0027697-CDS-F-serratus_M_contig1005:160728..160805Fucus serratus maleCDSF-serratus_M_contig1005 160729..160805 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1005.158.1prot_F-serratus_M_contig1005.158.1Fucus serratus malepolypeptideF-serratus_M_contig1005 159664..160805 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1005.158.1

>prot_F-serratus_M_contig1005.158.1 ID=prot_F-serratus_M_contig1005.158.1|Name=mRNA_F-serratus_M_contig1005.158.1|organism=Fucus serratus male|type=polypeptide|length=114bp
YQPHRRDEVYGDGRGYMENRAYSGDRERFPMRGRQFDTPPQAQGYHGGRR
SGVYHPPHRGSRDLPPQDFPPHQMIPRQQMGLPQQMVQPQQQMVQPHQII
SAQQMIQPQQQMIQ
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mRNA from alignment at F-serratus_M_contig1005:159662..160805-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1005.158.1 ID=mRNA_F-serratus_M_contig1005.158.1|Name=mRNA_F-serratus_M_contig1005.158.1|organism=Fucus serratus male|type=mRNA|length=1144bp|location=Sequence derived from alignment at F-serratus_M_contig1005:159662..160805- (Fucus serratus male)
TATCAACCGCATCGTCGTGATGAAGTTTATGGCGATGGCAGGGGATATAT
GGAGAACAGAGCCTACAGTGGCGACCGGTAAGGTCGTTATTCTAGCCGTG
TCTCTCGTAGTGGTGTGTAGTTTTGCTTTTATGACAGGGTTGTGTGTGCT
GTTCTCTCGTCCTCTTTTCTGTATCGAGTCTGTGTGTCGTGTCTGATTCG
TGGTGTCGTTTTTGGCAATGTGATCCACCAAATCTTTCCCGCCGAATATA
AATAAAATGGTCATCGCTCTAGAACGCCCCCCCCCCCCCCCCCCCACGCC
GTTACCCATTGTAACCCATAGACCGTAACCGCTTTTGAATGCCGCCCCCT
CCACCCCTCTCCCCGCCTTTTAAAACATAGGACTATAACCGCTCCAAAAT
GCCCCGCCTCTGCCGTTCGAGAACGCCTCCTCATTATCCTCTCCCTATGA
TCACCAAAATTTTCCCACCGAATCGAAAAAAATGGTCATCGTTCTTGAAC
GCCCCCCCCCCCCCTCCACCCCTCTCCCCGCCTCTTAAAACATAGGACTA
TAACCGCTCCAAAACGCCCCGCCTCTGCCGTTCGAGAACGCCTCCTCATT
ATCCTCTCCCTATGATCACCAAAATTTTCCCACCGAATCGAAAAAAAATG
GTCATCGTTCTAGAACGCCCCCCCCTCCACCCCTCTCCCCGCCTCTTAAA
ACATAGGACTATAACCGCTCGAAAACGCCCCGCCTCTGCCGTTCGAGAAC
GCCCCCCCGTTATCATCTCCCTATGATCTAGAACATATACTCCTGCGACC
TCCCGGAGTACGCGGTCGACCGACCCGACTGTAACTCGCTTCTCTGGTGT
CCTGTTGCGTATACCATGTCGTGTCAGAGAGAGGTTCCCGATGCGTGGAC
GCCAGTTCGACACCCCTCCTCAAGCTCAAGGGTATCACGGAGGTAGAAGA
TCGGGGGTCTACCATCCTCCGCATAGGGGGTCACGCGATCTCCCTCCGCA
AGACTTCCCGCCGCACCAGATGATTCCGCGACAACAGATGGGCCTGCCGC
AGCAGATGGTTCAGCCGCAGCAGCAGATGGTCCAGCCTCACCAGATTATC
TCCGCGCAGCAGATGATCCAGCCGCAGCAGCAAATGATCCAGCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1005:159662..160805-

>mRNA_F-serratus_M_contig1005.158.1 ID=mRNA_F-serratus_M_contig1005.158.1|Name=mRNA_F-serratus_M_contig1005.158.1|organism=Fucus serratus male|type=CDS|length=684bp|location=Sequence derived from alignment at F-serratus_M_contig1005:159662..160805- (Fucus serratus male)
TATCAACCGCATCGTCGTGATGAAGTTTATGGCGATGGCAGGGGATATAT
GGAGAACAGAGCCTACAGTGGCGACCGTATCAACCGCATCGTCGTGATGA
AGTTTATGGCGATGGCAGGGGATATATGGAGAACAGAGCCTACAGTGGCG
ACCGAGAGAGGTTCCCGATGCGTGGACGCCAGTTCGACACCCCTCCTCAA
GCTCAAGGGTATCACGGAGGTAGAAGATCGGGGGTCTACCATCCTCCGCA
TAGGGGGTCACGCGATCTCCCTCCGCAAGACTTCCCGCCGCACCAGATGA
TTCCGCGACAACAGATGGGCCTGCCGCAGCAGATGGTTCAGCCGCAGCAG
CAGATGGTCCAGCCTCACCAGATTATCTCCGCGCAGCAGATGATCCAGCC
GCAGCAGCAAATGATCCAGAGAGAGGTTCCCGATGCGTGGACGCCAGTTC
GACACCCCTCCTCAAGCTCAAGGGTATCACGGAGGTAGAAGATCGGGGGT
CTACCATCCTCCGCATAGGGGGTCACGCGATCTCCCTCCGCAAGACTTCC
CGCCGCACCAGATGATTCCGCGACAACAGATGGGCCTGCCGCAGCAGATG
GTTCAGCCGCAGCAGCAGATGGTCCAGCCTCACCAGATTATCTCCGCGCA
GCAGATGATCCAGCCGCAGCAGCAAATGATCCAG
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