mRNA_F-serratus_M_contig1005.155.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1005.155.1
Unique NamemRNA_F-serratus_M_contig1005.155.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1005.155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1005contigF-serratus_M_contig1005:65006..66457 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_001450.1
Exons1
Model size1454
Cds size1386
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928796.512414-UTR-F-serratus_M_contig1005:65005..650711622928796.512414-UTR-F-serratus_M_contig1005:65005..65071Fucus serratus maleUTRF-serratus_M_contig1005 65006..65071 +
1690962576.0120788-UTR-F-serratus_M_contig1005:65005..650711690962576.0120788-UTR-F-serratus_M_contig1005:65005..65071Fucus serratus maleUTRF-serratus_M_contig1005 65006..65071 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928796.5265439-CDS-F-serratus_M_contig1005:65071..664571622928796.5265439-CDS-F-serratus_M_contig1005:65071..66457Fucus serratus maleCDSF-serratus_M_contig1005 65072..66457 +
1690962576.0224943-CDS-F-serratus_M_contig1005:65071..664571690962576.0224943-CDS-F-serratus_M_contig1005:65071..66457Fucus serratus maleCDSF-serratus_M_contig1005 65072..66457 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1005.155.1prot_F-serratus_M_contig1005.155.1Fucus serratus malepolypeptideF-serratus_M_contig1005 65072..66457 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1005.155.1

>prot_F-serratus_M_contig1005.155.1 ID=prot_F-serratus_M_contig1005.155.1|Name=mRNA_F-serratus_M_contig1005.155.1|organism=Fucus serratus male|type=polypeptide|length=462bp
MSLDANMAELDDDCLFDRRKNDTNNPAVELASGVAESSRELSSDGVRNGD
GGSGAMSLSFLPSSARLSTGAAGGGERGRAMKKAKGRRRESVSSAGEDVT
VALPVCVEFADVGDEGEGRVRAAVSSSSGRYLRRRSSSIADVEMEGNDDV
VEASPGAADADAFAGNVRASVDPLPSEGEGILDDASDGNEAGVDKVVSEL
VKGHSSTTHGVTAKPAAVTAAAAVAFRPPLVRRASVSAAATAGAAPKHPA
VLPPRQRRASTTLSITKEAGVRRRASVAEAPTTSNSAATTVGTAEAKQDD
DAVDSTSTFPLVGAVDGRVDSPPASSADPTREVGSVEPLPPSVDNVTTHG
VSVPPRRRASSPLVSKKGKSSRSIAAGGESRRASLQTIMGSFRRGSVVPH
KATVGVTEGKGDARRTSDAGGGGVGALRARLASSDSVSSSGGLQYHSGEF
GRDELGITDITE
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mRNA from alignment at F-serratus_M_contig1005:65006..66457+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1005.155.1 ID=mRNA_F-serratus_M_contig1005.155.1|Name=mRNA_F-serratus_M_contig1005.155.1|organism=Fucus serratus male|type=mRNA|length=1452bp|location=Sequence derived from alignment at F-serratus_M_contig1005:65006..66457+ (Fucus serratus male)
CCTACCCAACCACGCACGCCTTAACAGTCCCCCGGGAGAACCTCCAACTC
CTGCCCTTCCCCGACAATGTCACTAGATGCCAATATGGCCGAGCTTGACG
ACGACTGTCTTTTCGATCGTAGAAAGAATGACACCAATAACCCCGCCGTG
GAGCTGGCTTCAGGAGTCGCCGAGTCGTCGCGGGAGCTTTCGTCGGATGG
TGTCCGTAATGGTGATGGCGGTTCTGGTGCCATGTCCTTATCTTTCTTGC
CTTCGTCGGCGCGGCTGTCCACTGGTGCTGCTGGTGGTGGTGAGAGGGGG
AGGGCAATGAAGAAGGCTAAGGGGAGGAGGCGTGAGAGCGTCTCGAGCGC
GGGGGAAGATGTTACGGTTGCCCTGCCGGTGTGCGTCGAGTTCGCTGACG
TTGGTGACGAAGGCGAGGGACGGGTTCGAGCTGCTGTGTCCTCGTCCTCG
GGAAGATACCTACGGCGGCGCTCGTCATCGATTGCTGATGTGGAGATGGA
GGGGAATGATGATGTTGTCGAAGCGTCGCCCGGCGCTGCTGATGCTGATG
CTTTCGCTGGGAACGTTCGTGCAAGCGTTGACCCGTTGCCGTCGGAGGGA
GAAGGCATTTTGGACGATGCCTCGGATGGCAACGAAGCTGGCGTTGACAA
GGTCGTGTCTGAGCTCGTCAAGGGTCATAGTTCGACGACCCACGGTGTCA
CAGCAAAGCCTGCAGCAGTAACAGCAGCAGCGGCGGTCGCCTTTCGACCT
CCTTTGGTCCGCCGGGCCTCGGTTTCCGCTGCAGCGACGGCCGGGGCAGC
GCCAAAGCATCCGGCGGTGCTTCCCCCCCGCCAACGACGCGCCTCGACGA
CGCTGTCCATCACGAAGGAGGCCGGTGTTCGGCGACGCGCGTCGGTCGCC
GAAGCTCCAACTACATCCAACTCTGCGGCGACCACGGTGGGCACAGCCGA
AGCCAAGCAAGATGACGATGCGGTGGATTCTACCTCCACTTTTCCCCTGG
TTGGTGCTGTCGATGGTCGAGTGGATTCGCCGCCAGCTTCCAGTGCTGAC
CCCACAAGGGAGGTGGGATCGGTAGAACCCCTTCCCCCTTCGGTCGATAA
TGTTACCACCCATGGGGTTTCCGTCCCGCCCCGACGCCGCGCTTCATCGC
CCTTGGTGTCGAAAAAGGGGAAGAGCAGCCGGAGCATTGCGGCGGGAGGA
GAGAGCCGGCGCGCATCGCTTCAGACAATCATGGGGTCCTTCCGGCGGGG
GTCGGTGGTGCCCCACAAGGCTACTGTTGGGGTGACCGAAGGAAAAGGTG
ACGCGCGGAGAACGTCAGACGCTGGAGGTGGTGGCGTTGGTGCTCTCCGG
GCGCGTCTGGCGTCGAGCGACTCTGTCTCCAGCTCCGGTGGTCTCCAGTA
CCACTCTGGGGAATTCGGCAGGGATGAGTTGGGGATTACGGATATTACGG
AG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1005:65006..66457+

>mRNA_F-serratus_M_contig1005.155.1 ID=mRNA_F-serratus_M_contig1005.155.1|Name=mRNA_F-serratus_M_contig1005.155.1|organism=Fucus serratus male|type=CDS|length=2772bp|location=Sequence derived from alignment at F-serratus_M_contig1005:65006..66457+ (Fucus serratus male)
ATGTCACTAGATGCCAATATGGCCGAGCTTGACGACGACTGTCTTTTCGA
TCGTAGAAAGAATGACACCAATAACCCCGCCGTGGAGCTGGCTTCAGGAG
TCGCCGAGTCGTCGCGGGAGCTTTCGTCGGATGGTGTCCGTAATGGTGAT
GGCGGTTCTGGTGCCATGTCCTTATCTTTCTTGCCTTCGTCGGCGCGGCT
GTCCACTGGTGCTGCTGGTGGTGGTGAGAGGGGGAGGGCAATGAAGAAGG
CTAAGGGGAGGAGGCGTGAGAGCGTCTCGAGCGCGGGGGAAGATGTTACG
GTTGCCCTGCCGGTGTGCGTCGAGTTCGCTGACGTTGGTGACGAAGGCGA
GGGACGGGTTCGAGCTGCTGTGTCCTCGTCCTCGGGAAGATACCTACGGC
GGCGCTCGTCATCGATTGCTGATGTGGAGATGGAGGGGAATGATGATGTT
GTCGAAGCGTCGCCCGGCGCTGCTGATGCTGATGCTTTCGCTGGGAACGT
TCGTGCAAGCGTTGACCCGTTGCCGTCGGAGGGAGAAGGCATTTTGGACG
ATGCCTCGGATGGCAACGAAGCTGGCGTTGACAAGGTCGTGTCTGAGCTC
GTCAAGGGTCATAGTTCGACGACCCACGGTGTCACAGCAAAGCCTGCAGC
AGTAACAGCAGCAGCGGCGGTCGCCTTTCGACCTCCTTTGGTCCGCCGGG
CCTCGGTTTCCGCTGCAGCGACGGCCGGGGCAGCGCCAAAGCATCCGGCG
GTGCTTCCCCCCCGCCAACGACGCGCCTCGACGACGCTGTCCATCACGAA
GGAGGCCGGTGTTCGGCGACGCGCGTCGGTCGCCGAAGCTCCAACTACAT
CCAACTCTGCGGCGACCACGGTGGGCACAGCCGAAGCCAAGCAAGATGAC
GATGCGGTGGATTCTACCTCCACTTTTCCCCTGGTTGGTGCTGTCGATGG
TCGAGTGGATTCGCCGCCAGCTTCCAGTGCTGACCCCACAAGGGAGGTGG
GATCGGTAGAACCCCTTCCCCCTTCGGTCGATAATGTTACCACCCATGGG
GTTTCCGTCCCGCCCCGACGCCGCGCTTCATCGCCCTTGGTGTCGAAAAA
GGGGAAGAGCAGCCGGAGCATTGCGGCGGGAGGAGAGAGCCGGCGCGCAT
CGCTTCAGACAATCATGGGGTCCTTCCGGCGGGGGTCGGTGGTGCCCCAC
AAGGCTACTGTTGGGGTGACCGAAGGAAAAGGTGACGCGCGGAGAACGTC
AGACGCTGGAGGTGGTGGCGTTGGTGCTCTCCGGGCGCGTCTGGCGTCGA
GCGACTCTGTCTCCAGCTCCGGTGGTCTCCAGTACCACTCTGGGGAATTC
GGCAGGGATGAGTTGGGGATTACGGATATTACGGAGATGTCACTAGATGC
CAATATGGCCGAGCTTGACGACGACTGTCTTTTCGATCGTAGAAAGAATG
ACACCAATAACCCCGCCGTGGAGCTGGCTTCAGGAGTCGCCGAGTCGTCG
CGGGAGCTTTCGTCGGATGGTGTCCGTAATGGTGATGGCGGTTCTGGTGC
CATGTCCTTATCTTTCTTGCCTTCGTCGGCGCGGCTGTCCACTGGTGCTG
CTGGTGGTGGTGAGAGGGGGAGGGCAATGAAGAAGGCTAAGGGGAGGAGG
CGTGAGAGCGTCTCGAGCGCGGGGGAAGATGTTACGGTTGCCCTGCCGGT
GTGCGTCGAGTTCGCTGACGTTGGTGACGAAGGCGAGGGACGGGTTCGAG
CTGCTGTGTCCTCGTCCTCGGGAAGATACCTACGGCGGCGCTCGTCATCG
ATTGCTGATGTGGAGATGGAGGGGAATGATGATGTTGTCGAAGCGTCGCC
CGGCGCTGCTGATGCTGATGCTTTCGCTGGGAACGTTCGTGCAAGCGTTG
ACCCGTTGCCGTCGGAGGGAGAAGGCATTTTGGACGATGCCTCGGATGGC
AACGAAGCTGGCGTTGACAAGGTCGTGTCTGAGCTCGTCAAGGGTCATAG
TTCGACGACCCACGGTGTCACAGCAAAGCCTGCAGCAGTAACAGCAGCAG
CGGCGGTCGCCTTTCGACCTCCTTTGGTCCGCCGGGCCTCGGTTTCCGCT
GCAGCGACGGCCGGGGCAGCGCCAAAGCATCCGGCGGTGCTTCCCCCCCG
CCAACGACGCGCCTCGACGACGCTGTCCATCACGAAGGAGGCCGGTGTTC
GGCGACGCGCGTCGGTCGCCGAAGCTCCAACTACATCCAACTCTGCGGCG
ACCACGGTGGGCACAGCCGAAGCCAAGCAAGATGACGATGCGGTGGATTC
TACCTCCACTTTTCCCCTGGTTGGTGCTGTCGATGGTCGAGTGGATTCGC
CGCCAGCTTCCAGTGCTGACCCCACAAGGGAGGTGGGATCGGTAGAACCC
CTTCCCCCTTCGGTCGATAATGTTACCACCCATGGGGTTTCCGTCCCGCC
CCGACGCCGCGCTTCATCGCCCTTGGTGTCGAAAAAGGGGAAGAGCAGCC
GGAGCATTGCGGCGGGAGGAGAGAGCCGGCGCGCATCGCTTCAGACAATC
ATGGGGTCCTTCCGGCGGGGGTCGGTGGTGCCCCACAAGGCTACTGTTGG
GGTGACCGAAGGAAAAGGTGACGCGCGGAGAACGTCAGACGCTGGAGGTG
GTGGCGTTGGTGCTCTCCGGGCGCGTCTGGCGTCGAGCGACTCTGTCTCC
AGCTCCGGTGGTCTCCAGTACCACTCTGGGGAATTCGGCAGGGATGAGTT
GGGGATTACGGATATTACGGAG
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