mRNA_F-serratus_M_contig1005.153.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1005.153.1
Unique NamemRNA_F-serratus_M_contig1005.153.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1005.153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1005contigF-serratus_M_contig1005:55399..56331 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size508
Cds size507
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928797.4187455-CDS-F-serratus_M_contig1005:55398..558031622928797.4187455-CDS-F-serratus_M_contig1005:55398..55803Fucus serratus maleCDSF-serratus_M_contig1005 55399..55803 +
1690962576.3978295-CDS-F-serratus_M_contig1005:55398..558031690962576.3978295-CDS-F-serratus_M_contig1005:55398..55803Fucus serratus maleCDSF-serratus_M_contig1005 55399..55803 +
1622928797.4310212-CDS-F-serratus_M_contig1005:56229..563311622928797.4310212-CDS-F-serratus_M_contig1005:56229..56331Fucus serratus maleCDSF-serratus_M_contig1005 56230..56331 +
1690962576.4058268-CDS-F-serratus_M_contig1005:56229..563311690962576.4058268-CDS-F-serratus_M_contig1005:56229..56331Fucus serratus maleCDSF-serratus_M_contig1005 56230..56331 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1005.153.1prot_F-serratus_M_contig1005.153.1Fucus serratus malepolypeptideF-serratus_M_contig1005 55399..56331 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1005.153.1

>prot_F-serratus_M_contig1005.153.1 ID=prot_F-serratus_M_contig1005.153.1|Name=mRNA_F-serratus_M_contig1005.153.1|organism=Fucus serratus male|type=polypeptide|length=169bp
THEDRRNSGETNSVFSAVAGLLESPIMGAFVGNEGTGKDAGKTTTKLAGE
GATTPFGGGPRYIANVQRGRDSIETARSECVLGLLESTPSPGGSGSVLDQ
SIADGSALKTQKTLAPVMYATELAEPALAMRDPAARRQTCERGDFENIIG
DLTPSGSSEPSEPTAERLE
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mRNA from alignment at F-serratus_M_contig1005:55399..56331+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1005.153.1 ID=mRNA_F-serratus_M_contig1005.153.1|Name=mRNA_F-serratus_M_contig1005.153.1|organism=Fucus serratus male|type=mRNA|length=933bp|location=Sequence derived from alignment at F-serratus_M_contig1005:55399..56331+ (Fucus serratus male)
ACGCACGAAGACCGCAGGAACAGCGGCGAAACCAACTCGGTTTTCTCGGC
GGTGGCAGGTTTGCTAGAGTCTCCCATTATGGGGGCGTTTGTGGGTAACG
AGGGGACCGGAAAGGATGCTGGGAAGACGACGACAAAGCTGGCAGGCGAG
GGGGCAACAACGCCGTTCGGTGGTGGCCCCAGGTATATTGCTAATGTCCA
GCGAGGAAGGGACAGCATTGAGACGGCGCGGTCGGAGTGTGTGCTCGGGT
TGCTGGAGTCAACGCCCTCGCCGGGGGGCAGTGGAAGCGTGCTGGATCAG
TCAATCGCTGACGGGTCGGCCCTCAAGACGCAGAAAACGCTCGCGCCGGT
GATGTATGCAACGGAACTGGCGGAGCCGGCGTTGGCGATGCGCGATCCCG
CGGCGGTGAGTTTTGGTTCCCCGGGGCTGTAGTAGCTTTTTTTTTTTATG
CCACGGTAAGTGTAGAGTATAGTGTATACTTACCCCTTTCTTCACCTCTT
TATTTTATTTATTTTTTATTCTTCCTTTGAGCATCAAGGTCTCTGGTGCG
GTGTACAAAAACCCTGTCGCATTTTGCGTCGTTCGCTTTGTGTGTCGCGA
TCATTTGCAGTGCTGGTTTGTTGTTGTTGTACAGAGTACAGAACCTTGCG
GTTGATACCTGCTACCATAGGGCTAATGTTGTTGTATTATTGTATAAAAT
ATGGTTAAAATTTTGGTTTTTGGAGTGGAGCGGAGTGTTGTATAACGTGC
AGAACCAAGGGGGTTTTCATGTATCCTGTACATATTGTGTACCCAAATTA
TTTCCCGCCGTGTCCTTATTTGATGTACCAGCGCCGTCAGACTTGCGAGC
GAGGAGACTTTGAGAACATCATCGGGGACCTCACGCCGTCGGGTTCTTCA
GAGCCGTCGGAACCTACTGCCGAAAGATTGGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1005:55399..56331+

>mRNA_F-serratus_M_contig1005.153.1 ID=mRNA_F-serratus_M_contig1005.153.1|Name=mRNA_F-serratus_M_contig1005.153.1|organism=Fucus serratus male|type=CDS|length=1014bp|location=Sequence derived from alignment at F-serratus_M_contig1005:55399..56331+ (Fucus serratus male)
ACGCACGAAGACCGCAGGAACAGCGGCGAAACCAACTCGGTTTTCTCGGC
GGTGGCAGGTTTGCTAGAGTCTCCCATTATGGGGGCGTTTGTGGGTAACG
AGGGGACCGGAAAGGATGCTGGGAAGACGACGACAAAGCTGGCAGGCGAG
GGGGCAACAACGCCGTTCGGTGGTGGCCCCAGGTATATTGCTAATGTCCA
GCGAGGAAGGGACAGCATTGAGACGGCGCGGTCGGAGTGTGTGCTCGGGT
TGCTGGAGTCAACGCCCTCGCCGGGGGGCAGTGGAAGCGTGCTGGATCAG
TCAATCGCTGACGGGTCGGCCCTCAAGACGCAGAAAACGCTCGCGCCGGT
GATGTATGCAACGGAACTGGCGGAGCCGGCGTTGGCGATGCGCGATCCCG
CGGCGACGCACGAAGACCGCAGGAACAGCGGCGAAACCAACTCGGTTTTC
TCGGCGGTGGCAGGTTTGCTAGAGTCTCCCATTATGGGGGCGTTTGTGGG
TAACGAGGGGACCGGAAAGGATGCTGGGAAGACGACGACAAAGCTGGCAG
GCGAGGGGGCAACAACGCCGTTCGGTGGTGGCCCCAGGTATATTGCTAAT
GTCCAGCGAGGAAGGGACAGCATTGAGACGGCGCGGTCGGAGTGTGTGCT
CGGGTTGCTGGAGTCAACGCCCTCGCCGGGGGGCAGTGGAAGCGTGCTGG
ATCAGTCAATCGCTGACGGGTCGGCCCTCAAGACGCAGAAAACGCTCGCG
CCGGTGATGTATGCAACGGAACTGGCGGAGCCGGCGTTGGCGATGCGCGA
TCCCGCGGCGCGCCGTCAGACTTGCGAGCGAGGAGACTTTGAGAACATCA
TCGGGGACCTCACGCCGTCGGGTTCTTCAGAGCCGTCGGAACCTACTGCC
GAAAGATTGGAGCGCCGTCAGACTTGCGAGCGAGGAGACTTTGAGAACAT
CATCGGGGACCTCACGCCGTCGGGTTCTTCAGAGCCGTCGGAACCTACTG
CCGAAAGATTGGAG
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