mRNA_F-serratus_M_contig1005.152.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1005.152.1
Unique NamemRNA_F-serratus_M_contig1005.152.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1005.152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1005contigF-serratus_M_contig1005:54160..55368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size804
Cds size804
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928796.3883708-CDS-F-serratus_M_contig1005:54159..544321622928796.3883708-CDS-F-serratus_M_contig1005:54159..54432Fucus serratus maleCDSF-serratus_M_contig1005 54160..54432 +
1690962575.970721-CDS-F-serratus_M_contig1005:54159..544321690962575.970721-CDS-F-serratus_M_contig1005:54159..54432Fucus serratus maleCDSF-serratus_M_contig1005 54160..54432 +
1622928796.4013808-CDS-F-serratus_M_contig1005:54837..553681622928796.4013808-CDS-F-serratus_M_contig1005:54837..55368Fucus serratus maleCDSF-serratus_M_contig1005 54838..55368 +
1690962575.9840865-CDS-F-serratus_M_contig1005:54837..553681690962575.9840865-CDS-F-serratus_M_contig1005:54837..55368Fucus serratus maleCDSF-serratus_M_contig1005 54838..55368 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1005.152.1prot_F-serratus_M_contig1005.152.1Fucus serratus malepolypeptideF-serratus_M_contig1005 54160..55368 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1005.152.1

>prot_F-serratus_M_contig1005.152.1 ID=prot_F-serratus_M_contig1005.152.1|Name=mRNA_F-serratus_M_contig1005.152.1|organism=Fucus serratus male|type=polypeptide|length=268bp
MGESAGSKMRGPISVKPQLPARRPRRSVASLDLSSRDPFRRDPHESGSLG
GVPLSAAEAAIGYGSRSGADLDNQERVRGGAVESTAMGEARGVAAKGEED
AMAEPSKRKSSRRSSRRLTADFSSVQNLLDSPSADAEEDDLEGVEQNAGG
RPAAQNTKNDPPPLDFNMEVGVFVGEGEQGAAGGDHGGQTADFDAFYEMM
NGALSDPNTALTADRPATQSASQTGGHRYPPRGSRFESASFESAYDDLLP
SSTGPSIRETAAAAADDD
back to top

mRNA from alignment at F-serratus_M_contig1005:54160..55368+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1005.152.1 ID=mRNA_F-serratus_M_contig1005.152.1|Name=mRNA_F-serratus_M_contig1005.152.1|organism=Fucus serratus male|type=mRNA|length=1209bp|location=Sequence derived from alignment at F-serratus_M_contig1005:54160..55368+ (Fucus serratus male)
ATGGGAGAGAGTGCGGGTAGTAAAATGCGGGGTCCGATTAGCGTGAAGCC
CCAGTTACCCGCCAGACGGCCTCGGAGATCTGTGGCAAGCCTCGACCTTT
CCTCCCGAGACCCCTTTCGTCGTGATCCTCATGAGAGCGGGTCGCTTGGG
GGTGTTCCGCTGTCAGCTGCTGAAGCCGCGATCGGTTATGGCTCTCGATC
GGGAGCTGACCTTGACAATCAGGAGAGGGTCCGCGGCGGAGCTGTTGAGT
CGACGGCCATGGGAGAGGCAAGGGTGAGGAATGGGGAGTTTAGGGTAGGT
TTTCGACAAGGAAGACCCGCCGAGTTGTCCGGCAAAAATGCATCACCGCT
TTGTTTGACAGTCTCGCAGCAAGCATGCGTCGCGCCACGAAAATATCGCG
TCTACGGGCCTTTGATGATCCAGAACCGAGCGTTTGCCTCTTACTATCTC
GCTGTGCCATTGTAGGGTTGCTCCCGCAGGTATGCTCGGTGCTGTTGAGA
GTCACTATGACAGCCTACGCGAGTAGCTCTGCAAACAACTCTTGGAGCGC
GTGTGTACTCAGCCGCCAATGTCGAATCTCATGCTAGCGCACAATCGATC
TGTTGCAGCATACTCGCTCTCTTTTTTTTTTACTGTTTTCGGTGTACCTG
GTACCTGTTATTGTGTTTCTGCATACAGGGGGTAGCCGCGAAAGGCGAAG
AGGATGCCATGGCAGAGCCCTCGAAGCGCAAGAGTTCTAGGCGTTCCTCG
CGCCGTCTGACCGCCGACTTCTCTTCCGTGCAGAACCTCTTGGACAGTCC
TTCAGCAGACGCAGAGGAGGACGACTTGGAAGGTGTCGAACAGAACGCCG
GCGGCCGTCCAGCCGCGCAGAATACGAAGAACGACCCGCCGCCGTTGGAT
TTCAATATGGAGGTTGGCGTTTTCGTTGGTGAGGGCGAGCAAGGCGCCGC
CGGGGGCGATCACGGCGGGCAGACGGCGGACTTCGACGCCTTCTACGAGA
TGATGAATGGCGCTTTAAGTGATCCCAATACGGCGTTAACCGCAGACCGA
CCTGCAACGCAATCCGCCTCGCAGACTGGAGGTCACCGATACCCCCCGCG
AGGGTCGAGATTTGAGAGCGCGTCCTTTGAGAGCGCGTACGATGATTTGC
TGCCTTCGTCGACGGGTCCATCGATTCGTGAGACGGCAGCAGCAGCTGCT
GATGATGAT
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1005:54160..55368+

>mRNA_F-serratus_M_contig1005.152.1 ID=mRNA_F-serratus_M_contig1005.152.1|Name=mRNA_F-serratus_M_contig1005.152.1|organism=Fucus serratus male|type=CDS|length=1608bp|location=Sequence derived from alignment at F-serratus_M_contig1005:54160..55368+ (Fucus serratus male)
ATGGGAGAGAGTGCGGGTAGTAAAATGCGGGGTCCGATTAGCGTGAAGCC
CCAGTTACCCGCCAGACGGCCTCGGAGATCTGTGGCAAGCCTCGACCTTT
CCTCCCGAGACCCCTTTCGTCGTGATCCTCATGAGAGCGGGTCGCTTGGG
GGTGTTCCGCTGTCAGCTGCTGAAGCCGCGATCGGTTATGGCTCTCGATC
GGGAGCTGACCTTGACAATCAGGAGAGGGTCCGCGGCGGAGCTGTTGAGT
CGACGGCCATGGGAGAGGCAAGGATGGGAGAGAGTGCGGGTAGTAAAATG
CGGGGTCCGATTAGCGTGAAGCCCCAGTTACCCGCCAGACGGCCTCGGAG
ATCTGTGGCAAGCCTCGACCTTTCCTCCCGAGACCCCTTTCGTCGTGATC
CTCATGAGAGCGGGTCGCTTGGGGGTGTTCCGCTGTCAGCTGCTGAAGCC
GCGATCGGTTATGGCTCTCGATCGGGAGCTGACCTTGACAATCAGGAGAG
GGTCCGCGGCGGAGCTGTTGAGTCGACGGCCATGGGAGAGGCAAGGGGGG
TAGCCGCGAAAGGCGAAGAGGATGCCATGGCAGAGCCCTCGAAGCGCAAG
AGTTCTAGGCGTTCCTCGCGCCGTCTGACCGCCGACTTCTCTTCCGTGCA
GAACCTCTTGGACAGTCCTTCAGCAGACGCAGAGGAGGACGACTTGGAAG
GTGTCGAACAGAACGCCGGCGGCCGTCCAGCCGCGCAGAATACGAAGAAC
GACCCGCCGCCGTTGGATTTCAATATGGAGGTTGGCGTTTTCGTTGGTGA
GGGCGAGCAAGGCGCCGCCGGGGGCGATCACGGCGGGCAGACGGCGGACT
TCGACGCCTTCTACGAGATGATGAATGGCGCTTTAAGTGATCCCAATACG
GCGTTAACCGCAGACCGACCTGCAACGCAATCCGCCTCGCAGACTGGAGG
TCACCGATACCCCCCGCGAGGGTCGAGATTTGAGAGCGCGTCCTTTGAGA
GCGCGTACGATGATTTGCTGCCTTCGTCGACGGGTCCATCGATTCGTGAG
ACGGCAGCAGCAGCTGCTGATGATGATGGGGTAGCCGCGAAAGGCGAAGA
GGATGCCATGGCAGAGCCCTCGAAGCGCAAGAGTTCTAGGCGTTCCTCGC
GCCGTCTGACCGCCGACTTCTCTTCCGTGCAGAACCTCTTGGACAGTCCT
TCAGCAGACGCAGAGGAGGACGACTTGGAAGGTGTCGAACAGAACGCCGG
CGGCCGTCCAGCCGCGCAGAATACGAAGAACGACCCGCCGCCGTTGGATT
TCAATATGGAGGTTGGCGTTTTCGTTGGTGAGGGCGAGCAAGGCGCCGCC
GGGGGCGATCACGGCGGGCAGACGGCGGACTTCGACGCCTTCTACGAGAT
GATGAATGGCGCTTTAAGTGATCCCAATACGGCGTTAACCGCAGACCGAC
CTGCAACGCAATCCGCCTCGCAGACTGGAGGTCACCGATACCCCCCGCGA
GGGTCGAGATTTGAGAGCGCGTCCTTTGAGAGCGCGTACGATGATTTGCT
GCCTTCGTCGACGGGTCCATCGATTCGTGAGACGGCAGCAGCAGCTGCTG
ATGATGAT
back to top