mRNA_F-serratus_M_contig1003.143.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1003.143.1
Unique NamemRNA_F-serratus_M_contig1003.143.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1003.143.1 vs. uniprot
Match: A0A6H5JFA7_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFA7_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 2.040e-64
Identity = 110/172 (63.95%), Postives = 127/172 (73.84%), Query Frame = 1 
Query:    1 LRPNNGSIIKQRPSILALDDFKCHRDKAFIADLLKRANTIVILIPGGLTSLLQPLDRMLNKRMKRLMRTKYTALTATATADPTTGKLKPPGNGVVSTGCKESWEIITPDVVKTCLKIWGLPLALDGSEDHAWCVHNFCEGYRELL*QQRVEREAAHPDVTHPPLYLPAVPEG 516
            LRPNNGSI++QRP IL LDDFKCH+D+ FIA L + ANTIV  IPGGLT LLQPLDRML ++M RL+R K TA +A+A AD  +GK+KPP  G+VST CKE+WE ITP+ VKTC KI  L LALDGSE HAWC HNF E  R+LL +Q     A H DVT PPL L   P G
Sbjct:  167 LRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVTFIPGGLTPLLQPLDRMLYRQMMRLLRGKCTAYSASAVADARSGKMKPPERGIVSTWCKEAWESITPETVKTCFKISALTLALDGSEGHAWCEHNFGEDCRDLLEEQHAVWLAEHLDVTLPPLKLLKEPGG 338
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BLAST of mRNA_F-serratus_M_contig1003.143.1 vs. uniprot
Match: A0A6H5JTI5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI5_9PHAE)

HSP 1 Score: 206 bits (525), Expect = 2.490e-64
Identity = 102/157 (64.97%), Postives = 121/157 (77.07%), Query Frame = 1 
Query:    1 LRPNNGSIIKQRPSILALDDFKCHRDKAFIADLLKRANTIVILIPGGLTSLLQPLDRMLNKRMKRLMRTKYTALTATATADPTTGKLKPPGNGVVSTGCKESWEIITPDVVKTCLKIWGLPLALDGSEDHAWCVHNFCEGYRELL*QQRVEREAAHP 471
            LRPNNGSI++QRP IL LDDFKCH+ + F+A L + ANT+VI IPGGLT L+QPLDRMLNK+MKRL+  KYTA +A+A  D  +GKLKPP  GVVST CKE+WE I P+ VKTC KI GL LALDG EDHAWC HNF E +R+LL ++     A HP
Sbjct:   26 LRPNNGSIVQQRPCILVLDDFKCHKAEGFMAALKRDANTMVIFIPGGLTPLVQPLDRMLNKQMKRLLWGKYTAYSASAVIDARSGKLKPPERGVVSTWCKEAWESINPETVKTCFKICGLTLALDGGEDHAWCQHNFGEDHRDLLEERHAVWLAEHP 182
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BLAST of mRNA_F-serratus_M_contig1003.143.1 vs. uniprot
Match: A0A6H5KT06_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT06_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 2.450e-63
Identity = 104/148 (70.27%), Postives = 118/148 (79.73%), Query Frame = 1 
Query:    1 LRPNNGSIIKQRPSILALDDFKCHRDKAFIADLLKRANTIVILIPGGLTSLLQPLDRMLNKRMKRLMRTKYTALTATATADPTTGKLKPPGNGVVSTGCKESWEIITPDVVKTCLKIWGLPLALDGSEDHAWCVHNFCEGYRELL*QQ 444
            LRPNNGSI++QRP IL LDDFK H+D+ FIA L + ANTIVI IPGGLT LLQPLD MLNK+MKRL+R KY A +A+A AD  +GKLKPP  GVVST CKE+WE ITP+ VKTC KI GL LALDGSEDHAWC HN  E YR+L  +Q
Sbjct:  123 LRPNNGSIVQQRPCILVLDDFKRHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLDCMLNKQMKRLLRGKYIAYSASAVADARSGKLKPPERGVVSTWCKEAWESITPETVKTCFKICGLTLALDGSEDHAWCEHNVGEDYRDLFEEQ 270
[Close]
BLAST of mRNA_F-serratus_M_contig1003.143.1 vs. uniprot
Match: A0A6H5KVR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR1_9PHAE)

HSP 1 Score: 216 bits (551), Expect = 3.330e-63
Identity = 122/207 (58.94%), Postives = 139/207 (67.15%), Query Frame = 1 
Query:    1 LRPNNGSIIKQRPSILALDDFKCHRDKAFIADLLKRANTIVILIPGGLTSLLQPLDRMLNKRMKRLMRTKYTALTATATADPTTGKLKPPGNGVVSTGCKESWEIITPDVVKTCLKIWGLPLALDGSEDHAWCVHNFCEGYRELL*QQRVEREAAHPDVTHPPLYLPAVPEGAIITNPITTADKEVDAKLLPSGTGWESDRDVELSE 621
            LRPNNGSI              CH+D  FIA L + A+TIVI IPGGLT LLQPLDRMLNK+  RL+R  YTA TA A  DP TGKL PPG G V+T CK +W  ITP+ VKTC KI GL LALDGSEDHAWC+HNF +GYRELL QQRVE  A HP+VT PPL LP VP  +   N I  A KE++  LLP G     D D+E+ +
Sbjct:  429 LRPNNGSI--------------CHKDDGFIAALKREASTIVIFIPGGLTPLLQPLDRMLNKQ--RLLRGMYTAHTAKAVRDPKTGKLAPPGRGAVATWCKNAWASITPETVKTCFKICGLTLALDGSEDHAWCLHNFGDGYRELLEQQRVEWLAEHPNVTLPPLQLPKVPAEST-ANHIEAAAKELEEWLLPRG----DDSDIEIED 614
[Close]
BLAST of mRNA_F-serratus_M_contig1003.143.1 vs. uniprot
Match: A0A6H5L467_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L467_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 3.300e-62
Identity = 99/136 (72.79%), Postives = 110/136 (80.88%), Query Frame = 1 
Query:    1 LRPNNGSIIKQRPSILALDDFKCHRDKAFIADLLKRANTIVILIPGGLTSLLQPLDRMLNKRMKRLMRTKYTALTATATADPTTGKLKPPGNGVVSTGCKESWEIITPDVVKTCLKIWGLPLALDGSEDHAWCVHN 408
            LRPNNGSI++QRP IL LDDFKCH+D++FIA L   ANTIVI IPGGL  LLQPLDRMLNK+MKRL+R KYTA +A+A AD  +GK KPP  GVVST CKE WE ITP+ VKTC KI G  LALDGSEDHAWC HN
Sbjct:   26 LRPNNGSIVQQRPCILVLDDFKCHKDESFIAALKNDANTIVIFIPGGLAPLLQPLDRMLNKQMKRLLRGKYTAYSASAVADARSGKQKPPERGVVSTWCKEEWESITPETVKTCFKICGRTLALDGSEDHAWCEHN 161
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1003.143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFA7_9PHAE2.040e-6463.95DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JTI5_9PHAE2.490e-6464.97DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KT06_9PHAE2.450e-6370.27DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KVR1_9PHAE3.330e-6358.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L467_9PHAE3.300e-6272.79DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1003contigF-serratus_M_contig1003:169093..169773 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size681
Cds size267
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1003.143.1prot_F-serratus_M_contig1003.143.1Fucus serratus malepolypeptideF-serratus_M_contig1003 169336..169602 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928795.2082918-UTR-F-serratus_M_contig1003:169092..1693351622928795.2082918-UTR-F-serratus_M_contig1003:169092..169335Fucus serratus maleUTRF-serratus_M_contig1003 169093..169335 -
1690962575.4222589-UTR-F-serratus_M_contig1003:169092..1693351690962575.4222589-UTR-F-serratus_M_contig1003:169092..169335Fucus serratus maleUTRF-serratus_M_contig1003 169093..169335 -
1622928795.2440405-UTR-F-serratus_M_contig1003:169602..1697731622928795.2440405-UTR-F-serratus_M_contig1003:169602..169773Fucus serratus maleUTRF-serratus_M_contig1003 169603..169773 -
1690962575.4388998-UTR-F-serratus_M_contig1003:169602..1697731690962575.4388998-UTR-F-serratus_M_contig1003:169602..169773Fucus serratus maleUTRF-serratus_M_contig1003 169603..169773 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928795.2304866-CDS-F-serratus_M_contig1003:169335..1696021622928795.2304866-CDS-F-serratus_M_contig1003:169335..169602Fucus serratus maleCDSF-serratus_M_contig1003 169336..169602 -
1690962575.4308958-CDS-F-serratus_M_contig1003:169335..1696021690962575.4308958-CDS-F-serratus_M_contig1003:169335..169602Fucus serratus maleCDSF-serratus_M_contig1003 169336..169602 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1003.143.1

>prot_F-serratus_M_contig1003.143.1 ID=prot_F-serratus_M_contig1003.143.1|Name=mRNA_F-serratus_M_contig1003.143.1|organism=Fucus serratus male|type=polypeptide|length=89bp
MLNKRMKRLMRTKYTALTATATADPTTGKLKPPGNGVVSTGCKESWEIIT
PDVVKTCLKIWGLPLALDGSEDHAWCVHNFCEGYRELL*
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mRNA from alignment at F-serratus_M_contig1003:169093..169773-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1003.143.1 ID=mRNA_F-serratus_M_contig1003.143.1|Name=mRNA_F-serratus_M_contig1003.143.1|organism=Fucus serratus male|type=mRNA|length=681bp|location=Sequence derived from alignment at F-serratus_M_contig1003:169093..169773- (Fucus serratus male)
CTCCGCCCAAACAATGGAAGCATCATCAAGCAGCGCCCAAGCATCTTGGC
GTTGGACGACTTCAAGTGCCACCGAGACAAAGCTTTCATCGCTGACCTCT
TGAAGAGGGCGAACACCATCGTTATCCTGATCCCAGGCGGGTTAACTTCT
CTCCTCCAGCCGCTGGACCGCATGCTCAACAAGCGGATGAAGCGGCTGAT
GCGGACGAAGTACACCGCCCTTACCGCAACAGCAACGGCAGATCCCACGA
CGGGCAAGCTGAAGCCGCCGGGGAATGGGGTCGTGTCTACGGGGTGCAAG
GAGTCGTGGGAAATCATCACCCCCGACGTGGTCAAGACTTGCCTCAAGAT
CTGGGGCCTCCCGCTTGCCCTCGATGGCAGCGAGGACCACGCCTGGTGCG
TGCACAACTTCTGTGAAGGTTACCGCGAGCTTCTCTAGCAGCAGCGCGTC
GAGCGGGAGGCAGCACACCCCGATGTAACTCATCCCCCGCTCTACCTGCC
AGCGGTGCCCGAGGGCGCCATCATTACCAACCCCATCACGACCGCAGATA
AGGAGGTAGATGCGAAACTGCTGCCCTCCGGCACTGGTTGGGAAAGCGAT
CGCGATGTAGAGCTCTCGGAAGACGACAGTAATGTAGAGCTCTTGGACGC
TCCGGGAGGTGGGGGCGCAAAAGGCGACGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1003:169093..169773-

>mRNA_F-serratus_M_contig1003.143.1 ID=mRNA_F-serratus_M_contig1003.143.1|Name=mRNA_F-serratus_M_contig1003.143.1|organism=Fucus serratus male|type=CDS|length=534bp|location=Sequence derived from alignment at F-serratus_M_contig1003:169093..169773- (Fucus serratus male)
ATGCTCAACAAGCGGATGAAGCGGCTGATGCGGACGAAGTACACCGCCCT
TACCGCAACAGCAACGGCAGATCCCACGACGGGCAAGCTGAAGCCGCCGG
GGAATGGGGTCGTGTCTACGGGGTGCAAGGAGTCGTGGGAAATCATCACC
CCCGACGTGGTCAAGACTTGCCTCAAGATCTGGGGCCTCCCGCTTGCCCT
CGATGGCAGCGAGGACCACGCCTGGTGCGTGCACAACTTCTGTGAAGGTT
ACCGCGAGCTTCTCTAGATGCTCAACAAGCGGATGAAGCGGCTGATGCGG
ACGAAGTACACCGCCCTTACCGCAACAGCAACGGCAGATCCCACGACGGG
CAAGCTGAAGCCGCCGGGGAATGGGGTCGTGTCTACGGGGTGCAAGGAGT
CGTGGGAAATCATCACCCCCGACGTGGTCAAGACTTGCCTCAAGATCTGG
GGCCTCCCGCTTGCCCTCGATGGCAGCGAGGACCACGCCTGGTGCGTGCA
CAACTTCTGTGAAGGTTACCGCGAGCTTCTCTAG
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