mRNA_F-serratus_M_contig1002.141.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1002.141.1
Unique NamemRNA_F-serratus_M_contig1002.141.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1002.141.1 vs. uniprot
Match: A0A0M0JA75_9EUKA (Serine protease n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JA75_9EUKA)

HSP 1 Score: 248 bits (632), Expect = 9.870e-79
Identity = 117/191 (61.26%), Postives = 155/191 (81.15%), Query Frame = 1 
Query:   10 QVGDWVIAVGNPVGLDSTVTLGIVSSMKRSSEEVGFPERKVTFIQTDAAINPGNSGGPLVNEFGEVVGINTAIRAHTEGIGFAIPINKAKAIMHDLAEGNRIEYAYVGIHMTTITPDFAIQNNRDPNSHQLIPEVNGAIIVRVLPSTPASDAGLRRHDVVIEMRGRTVKTADEAKQVVDESRVGDVLTFKV 582
            QVGDWVIA+GN VGLDSTVTLGIVSS++RS+ EVG P +KV FIQTDAAINPGNSGGPL+NEFGEV+GINTAIRA+  GIGFAIPI+ A+  M +L++G +I +AY+GI M+T+TPD A QNN DPNS+  +PE++GA+++ V P TPA+ AG ++ D++ E+ G+ VK+A +A+ +VD  +VG  L  K+
Sbjct:  135 QVGDWVIAIGNAVGLDSTVTLGIVSSLQRSAAEVGIPNKKVNFIQTDAAINPGNSGGPLLNEFGEVIGINTAIRANAAGIGFAIPIDTAEKAMRELSQGRKIAHAYLGISMSTLTPDSARQNNADPNSNVELPEISGALVLAVAPETPAAKAGFKKFDLIQELDGKAVKSAADAQSIVDNCKVGQSLVAKI 325
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BLAST of mRNA_F-serratus_M_contig1002.141.1 vs. uniprot
Match: A0A7S3AT22_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AT22_9EUKA)

HSP 1 Score: 247 bits (630), Expect = 1.300e-78
Identity = 115/191 (60.21%), Postives = 157/191 (82.20%), Query Frame = 1 
Query:   10 QVGDWVIAVGNPVGLDSTVTLGIVSSMKRSSEEVGFPERKVTFIQTDAAINPGNSGGPLVNEFGEVVGINTAIRAHTEGIGFAIPINKAKAIMHDLAEGNRIEYAYVGIHMTTITPDFAIQNNRDPNSHQLIPEVNGAIIVRVLPSTPASDAGLRRHDVVIEMRGRTVKTADEAKQVVDESRVGDVLTFKV 582
            QVGDWVIA+GN VGLDSTVTLGIVSS+ RS+ EVG P +KV FIQTDAAINPGNSGGPL+NEFGEV+GINTAIRA+  GIGFAIPI+ A+ ++ +LA+G ++ +A++GI M+++T + A QNN DPNS+  +PE+ GA+++ V P TPA+ AG+R+ D++ EM G+ +KTA +A+ +VD S+VG+ LT ++
Sbjct:  128 QVGDWVIAIGNAVGLDSTVTLGIVSSLSRSAAEVGIPNKKVNFIQTDAAINPGNSGGPLLNEFGEVIGINTAIRANAAGIGFAIPIDVAEKVLRELAQGRKVPHAFLGISMSSLTAEAARQNNADPNSNIYLPELQGALVLAVAPDTPAAKAGVRKFDLIQEMAGKVIKTAADAQALVDSSKVGESLTLRI 318
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BLAST of mRNA_F-serratus_M_contig1002.141.1 vs. uniprot
Match: K8GQ21_9CYAN (Trypsin-like serine protease with C-terminal PDZ domain n=3 Tax=Cyanobacteria TaxID=1117 RepID=K8GQ21_9CYAN)

HSP 1 Score: 249 bits (635), Expect = 1.370e-78
Identity = 119/191 (62.30%), Postives = 153/191 (80.10%), Query Frame = 1 
Query:   10 QVGDWVIAVGNPVGLDSTVTLGIVSSMKRSSEEVGFPERKVTFIQTDAAINPGNSGGPLVNEFGEVVGINTAIRAHTEGIGFAIPINKAKAIMHDLAEGNRIEYAYVGIHMTTITPDFAIQNNRDPNSHQLIPEVNGAIIVRVLPSTPASDAGLRRHDVVIEMRGRTVKTADEAKQVVDESRVGDVLTFKV 582
            QVGDW IAVGNP+GLD+TVTLGIVS++KRSS +VG P++++ FIQTDAAINPGNSGGPL+N  GEV+GINTAIRA   GIGFAIP+NKAK I   LA G +I + Y+G+ MTT+TP+ A QNN DPNS  ++PEVNG ++VRVL +TPA  AGLRR DV+ E+ G+ + TA++ + VV+ S+VG +L  +V
Sbjct:  192 QVGDWAIAVGNPLGLDNTVTLGIVSTLKRSSAQVGIPDKRLDFIQTDAAINPGNSGGPLLNAQGEVIGINTAIRADAMGIGFAIPVNKAKEIEARLARGEKIAHPYLGVQMTTLTPELARQNNTDPNSPFMVPEVNGVVVVRVLQNTPAERAGLRRGDVITEIDGQAISTAEQLQTVVENSQVGQILKVRV 382
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BLAST of mRNA_F-serratus_M_contig1002.141.1 vs. uniprot
Match: A0A350Y0W1_9CYAN (Serine protease n=1 Tax=Cyanobacteria bacterium UBA11370 TaxID=2055769 RepID=A0A350Y0W1_9CYAN)

HSP 1 Score: 249 bits (635), Expect = 1.370e-78
Identity = 117/191 (61.26%), Postives = 157/191 (82.20%), Query Frame = 1 
Query:   10 QVGDWVIAVGNPVGLDSTVTLGIVSSMKRSSEEVGFPERKVTFIQTDAAINPGNSGGPLVNEFGEVVGINTAIRAHTEGIGFAIPINKAKAIMHDLAEGNRIEYAYVGIHMTTITPDFAIQNNRDPNSHQLIPEVNGAIIVRVLPSTPASDAGLRRHDVVIEMRGRTVKTADEAKQVVDESRVGDVLTFKV 582
            QVGDW IAVGNP+GLD+TVTLGI+S+++RSS EVG P++++ FIQTDAAINPGNSGGPL+NE G+V+GINTAIRA   GIGFAIPIN+AK I   L  G ++ + ++GI MT++TPD A QNNRDPNS  ++PEVNG ++++VLP++PA  AG+RR DVVIE+ G++V+TA++ +++V+ S V  VL  KV
Sbjct:  192 QVGDWAIAVGNPLGLDNTVTLGIISTLQRSSSEVGIPDKRLDFIQTDAAINPGNSGGPLLNERGDVIGINTAIRADAMGIGFAIPINQAKTISAKLVRGEKVPHPFIGIQMTSLTPDLAQQNNRDPNSPFMVPEVNGVLVMKVLPNSPAEAAGVRRGDVVIEIDGQSVRTAEQLQRIVENSGVDRVLQLKV 382
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BLAST of mRNA_F-serratus_M_contig1002.141.1 vs. uniprot
Match: A0A2T1DCF4_9CYAN (PDZ domain-containing protein n=2 Tax=Phormidesmis priestleyi TaxID=268141 RepID=A0A2T1DCF4_9CYAN)

HSP 1 Score: 248 bits (633), Expect = 2.820e-78
Identity = 118/191 (61.78%), Postives = 153/191 (80.10%), Query Frame = 1 
Query:   10 QVGDWVIAVGNPVGLDSTVTLGIVSSMKRSSEEVGFPERKVTFIQTDAAINPGNSGGPLVNEFGEVVGINTAIRAHTEGIGFAIPINKAKAIMHDLAEGNRIEYAYVGIHMTTITPDFAIQNNRDPNSHQLIPEVNGAIIVRVLPSTPASDAGLRRHDVVIEMRGRTVKTADEAKQVVDESRVGDVLTFKV 582
            QVGDW IAVGNP+GLD+TVTLGIVS++KRSS +VG P++++ FIQTDAAINPGNSGGPL+N+ GEV+GINTAIRA   GIGFAIPINKAK+I   LA G  I + Y+G+ MTT+TP+ A QNN DPNS  ++PEVNG I++RVLP+TPA+ AGLRR DV+ ++ G+ V  A++ + VV+ S +G  L  ++
Sbjct:  193 QVGDWAIAVGNPLGLDNTVTLGIVSTLKRSSAQVGIPDKRIDFIQTDAAINPGNSGGPLLNDRGEVIGINTAIRADAMGIGFAIPINKAKSIKDQLARGETIPHPYLGVQMTTLTPEIAQQNNSDPNSAFMVPEVNGVIVIRVLPNTPAAVAGLRRGDVITQIDGQAVAKAEQLQAVVENSHLGQTLKIQL 383
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1002.141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0M0JA75_9EUKA9.870e-7961.26Serine protease n=1 Tax=Chrysochromulina tobinii T... [more]
A0A7S3AT22_9EUKA1.300e-7860.21Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
K8GQ21_9CYAN1.370e-7862.30Trypsin-like serine protease with C-terminal PDZ d... [more]
A0A350Y0W1_9CYAN1.370e-7861.26Serine protease n=1 Tax=Cyanobacteria bacterium UB... [more]
A0A2T1DCF4_9CYAN2.820e-7861.78PDZ domain-containing protein n=2 Tax=Phormidesmis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1002contigF-serratus_M_contig1002:272658..273933 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score260.4
Seed ortholog evalue6.8e-67
Seed eggNOG ortholog130081.XP_005705279.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.serine-type endopeptidase activity
EggNOG OGsCOG0265@1,KOG1320@2759
Ec32 ortholog descriptiontrypsin-like serine protease
Ec32 orthologEc-12_005910.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size582
Cds size582
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1002.141.1prot_F-serratus_M_contig1002.141.1Fucus serratus malepolypeptideF-serratus_M_contig1002 272658..273933 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928794.886418-CDS-F-serratus_M_contig1002:272657..2729301622928794.886418-CDS-F-serratus_M_contig1002:272657..272930Fucus serratus maleCDSF-serratus_M_contig1002 272658..272930 +
1690962575.280046-CDS-F-serratus_M_contig1002:272657..2729301690962575.280046-CDS-F-serratus_M_contig1002:272657..272930Fucus serratus maleCDSF-serratus_M_contig1002 272658..272930 +
1622928794.9028406-CDS-F-serratus_M_contig1002:273294..2734321622928794.9028406-CDS-F-serratus_M_contig1002:273294..273432Fucus serratus maleCDSF-serratus_M_contig1002 273295..273432 +
1690962575.2913826-CDS-F-serratus_M_contig1002:273294..2734321690962575.2913826-CDS-F-serratus_M_contig1002:273294..273432Fucus serratus maleCDSF-serratus_M_contig1002 273295..273432 +
1622928794.917449-CDS-F-serratus_M_contig1002:273762..2739331622928794.917449-CDS-F-serratus_M_contig1002:273762..273933Fucus serratus maleCDSF-serratus_M_contig1002 273763..273933 +
1690962575.2999823-CDS-F-serratus_M_contig1002:273762..2739331690962575.2999823-CDS-F-serratus_M_contig1002:273762..273933Fucus serratus maleCDSF-serratus_M_contig1002 273763..273933 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1002.141.1

>prot_F-serratus_M_contig1002.141.1 ID=prot_F-serratus_M_contig1002.141.1|Name=mRNA_F-serratus_M_contig1002.141.1|organism=Fucus serratus male|type=polypeptide|length=194bp
MPSQVGDWVIAVGNPVGLDSTVTLGIVSSMKRSSEEVGFPERKVTFIQTD
AAINPGNSGGPLVNEFGEVVGINTAIRAHTEGIGFAIPINKAKAIMHDLA
EGNRIEYAYVGIHMTTITPDFAIQNNRDPNSHQLIPEVNGAIIVRVLPST
PASDAGLRRHDVVIEMRGRTVKTADEAKQVVDESRVGDVLTFKV
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mRNA from alignment at F-serratus_M_contig1002:272658..273933+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1002.141.1 ID=mRNA_F-serratus_M_contig1002.141.1|Name=mRNA_F-serratus_M_contig1002.141.1|organism=Fucus serratus male|type=mRNA|length=1276bp|location=Sequence derived from alignment at F-serratus_M_contig1002:272658..273933+ (Fucus serratus male)
ATGCCGTCGCAGGTCGGGGACTGGGTGATCGCCGTCGGTAACCCGGTCGG
CCTGGACAGCACCGTGACCCTCGGCATCGTGAGCAGCATGAAGCGTTCCA
GCGAGGAGGTGGGTTTCCCAGAGCGGAAGGTGACCTTCATCCAGACGGAC
GCGGCGATCAACCCGGGCAACTCGGGCGGCCCCCTGGTGAACGAGTTCGG
AGAAGTGGTGGGCATAAACACGGCCATACGCGCCCACACCGAGGGCATCG
GTTTCGCCATCCCCATCAACAAGGTATCCAGCAGTTTCTCTTATATCAAT
GAAGAAGAGGAGGAAGGTAGACGAGGAGGGATACTGTGTAGCAATGATAT
TTTTTGTGCTTGCTGCGCTTTTGTTTGTTTTTTCTTGTGTGGGGGTTTTA
CGCGGGGTGTACGTTTTTGCCTTGCACGCCCCTCAGGCCGCCGCTACTCC
TCGCTCTCCGAAGATTTTGGTCAAGGGTCATGGAGCGGGAGATTATGGCA
GAAAGGCTTTCTACGGGATGTCAGCCAAACATTTCTCCGCATCGTAGTTC
GAGGTCATGGCCTCCACAAAGGGTTGTAGGGAGTCAATCTCTCTCTTTCT
CAACGCTGATTTTTCCCTCGCGGTTGTTCGCTCCCAGGCGAAGGCCATCA
TGCACGATCTTGCGGAGGGCAACCGCATCGAGTACGCGTACGTCGGTATC
CACATGACGACCATCACGCCCGACTTCGCCATCCAGAACAACCGGGACCC
CAACTCTCACCAGCTGATACCCGAGGTACAATGTCGGTCGATCAATGAAG
CTAGGAACCGAGGGCTCCGCGTCTCGACACGTACAAATTATAGTATATAA
TTAAGATCGATGGGCGGCGGCGATGTGTTGCGAGTGGCGTTGTTTCATCG
CCGTGGGTGGTGTGACTCGAAAGACTCTTTCGCTTCACTTCTTAGGTTTC
CCGCGTCTTTTCCCGACCTCGGTGACAGTATCAAGAGCAATGGAATAAGC
CCGTTGTCTTCTTGTTCTTCAGTCTGGCTTATGGCGCATAACCCTTCTTC
TTTTCTCTTATCAAGGAGGATGTTTTAACCTCAACCCTTATCTCTATATA
TAAAGGTGAACGGCGCTATCATCGTGCGGGTCTTGCCGAGCACTCCCGCG
TCAGACGCGGGTCTGCGCCGCCATGACGTGGTGATTGAGATGAGAGGGAG
GACCGTCAAAACAGCAGACGAAGCCAAGCAGGTGGTGGACGAGAGCAGGG
TGGGCGATGTCCTCACCTTCAAGGTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1002:272658..273933+

>mRNA_F-serratus_M_contig1002.141.1 ID=mRNA_F-serratus_M_contig1002.141.1|Name=mRNA_F-serratus_M_contig1002.141.1|organism=Fucus serratus male|type=CDS|length=1164bp|location=Sequence derived from alignment at F-serratus_M_contig1002:272658..273933+ (Fucus serratus male)
ATGCCGTCGCAGGTCGGGGACTGGGTGATCGCCGTCGGTAACCCGGTCGG
CCTGGACAGCACCGTGACCCTCGGCATCGTGAGCAGCATGAAGCGTTCCA
GCGAGGAGGTGGGTTTCCCAGAGCGGAAGGTGACCTTCATCCAGACGGAC
GCGGCGATCAACCCGGGCAACTCGGGCGGCCCCCTGGTGAACGAGTTCGG
AGAAGTGGTGGGCATAAACACGGCCATACGCGCCCACACCGAGGGCATCG
GTTTCGCCATCCCCATCAACAAGATGCCGTCGCAGGTCGGGGACTGGGTG
ATCGCCGTCGGTAACCCGGTCGGCCTGGACAGCACCGTGACCCTCGGCAT
CGTGAGCAGCATGAAGCGTTCCAGCGAGGAGGTGGGTTTCCCAGAGCGGA
AGGTGACCTTCATCCAGACGGACGCGGCGATCAACCCGGGCAACTCGGGC
GGCCCCCTGGTGAACGAGTTCGGAGAAGTGGTGGGCATAAACACGGCCAT
ACGCGCCCACACCGAGGGCATCGGTTTCGCCATCCCCATCAACAAGGCGA
AGGCCATCATGCACGATCTTGCGGAGGGCAACCGCATCGAGTACGCGTAC
GTCGGTATCCACATGACGACCATCACGCCCGACTTCGCCATCCAGAACAA
CCGGGACCCCAACTCTCACCAGCTGATACCCGAGGCGAAGGCCATCATGC
ACGATCTTGCGGAGGGCAACCGCATCGAGTACGCGTACGTCGGTATCCAC
ATGACGACCATCACGCCCGACTTCGCCATCCAGAACAACCGGGACCCCAA
CTCTCACCAGCTGATACCCGAGGTGAACGGCGCTATCATCGTGCGGGTCT
TGCCGAGCACTCCCGCGTCAGACGCGGGTCTGCGCCGCCATGACGTGGTG
ATTGAGATGAGAGGGAGGACCGTCAAAACAGCAGACGAAGCCAAGCAGGT
GGTGGACGAGAGCAGGGTGGGCGATGTCCTCACCTTCAAGGTGGTGAACG
GCGCTATCATCGTGCGGGTCTTGCCGAGCACTCCCGCGTCAGACGCGGGT
CTGCGCCGCCATGACGTGGTGATTGAGATGAGAGGGAGGACCGTCAAAAC
AGCAGACGAAGCCAAGCAGGTGGTGGACGAGAGCAGGGTGGGCGATGTCC
TCACCTTCAAGGTG
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