mRNA_F-serratus_M_contig1002.140.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1002.140.1
Unique NamemRNA_F-serratus_M_contig1002.140.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1002.140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1002contigF-serratus_M_contig1002:262194..262736 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size544
Cds size534
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928792.9067755-UTR-F-serratus_M_contig1002:262193..2622021622928792.9067755-UTR-F-serratus_M_contig1002:262193..262202Fucus serratus maleUTRF-serratus_M_contig1002 262194..262202 +
1690962574.3048-UTR-F-serratus_M_contig1002:262193..2622021690962574.3048-UTR-F-serratus_M_contig1002:262193..262202Fucus serratus maleUTRF-serratus_M_contig1002 262194..262202 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928792.9239633-CDS-F-serratus_M_contig1002:262202..2627361622928792.9239633-CDS-F-serratus_M_contig1002:262202..262736Fucus serratus maleCDSF-serratus_M_contig1002 262203..262736 +
1690962574.3282523-CDS-F-serratus_M_contig1002:262202..2627361690962574.3282523-CDS-F-serratus_M_contig1002:262202..262736Fucus serratus maleCDSF-serratus_M_contig1002 262203..262736 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1002.140.1prot_F-serratus_M_contig1002.140.1Fucus serratus malepolypeptideF-serratus_M_contig1002 262203..262736 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1002.140.1

>prot_F-serratus_M_contig1002.140.1 ID=prot_F-serratus_M_contig1002.140.1|Name=mRNA_F-serratus_M_contig1002.140.1|organism=Fucus serratus male|type=polypeptide|length=178bp
MVRKLKRERHATAALFGLAVSCPAALALCPSIPPLDNAKHLSRRGALSDD
PLPQQVPAARWCSELCFPGRVAPCRLPSTCVERRRNPWRLGASRRDPSQA
QGDGEVEQNQEEGGTDIRTEAIGSRLPAAATRAAAAPLIDHGKEPEEKRA
ALRRMRRKERAKIKVISDASDSKKGNSR
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mRNA from alignment at F-serratus_M_contig1002:262194..262736+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1002.140.1 ID=mRNA_F-serratus_M_contig1002.140.1|Name=mRNA_F-serratus_M_contig1002.140.1|organism=Fucus serratus male|type=mRNA|length=543bp|location=Sequence derived from alignment at F-serratus_M_contig1002:262194..262736+ (Fucus serratus male)
GCAGCACTCATGGTACGAAAACTGAAACGAGAGAGGCATGCCACAGCAGC
ATTATTCGGTCTTGCAGTTTCGTGTCCCGCAGCGTTGGCACTTTGTCCCT
CTATCCCCCCCCTCGATAACGCCAAACACCTCTCCCGAAGAGGCGCTCTA
TCAGATGATCCACTTCCACAGCAGGTGCCTGCCGCGAGATGGTGCAGCGA
GCTTTGCTTTCCAGGCAGAGTAGCGCCATGCAGACTTCCTTCTACTTGCG
TTGAGCGGAGAAGAAACCCCTGGCGACTGGGAGCATCAAGGCGAGACCCC
AGCCAAGCTCAAGGCGACGGGGAAGTGGAACAAAATCAGGAAGAGGGTGG
CACGGACATTAGGACAGAGGCAATCGGTAGCCGTCTTCCGGCGGCGGCAA
CTCGCGCCGCGGCAGCGCCCTTAATAGACCATGGGAAAGAGCCGGAGGAA
AAACGGGCGGCGTTACGTCGCATGAGGCGTAAGGAAAGGGCAAAGATCAA
GGTGATCTCTGACGCCAGCGACAGTAAGAAAGGTAACAGCAGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1002:262194..262736+

>mRNA_F-serratus_M_contig1002.140.1 ID=mRNA_F-serratus_M_contig1002.140.1|Name=mRNA_F-serratus_M_contig1002.140.1|organism=Fucus serratus male|type=CDS|length=1068bp|location=Sequence derived from alignment at F-serratus_M_contig1002:262194..262736+ (Fucus serratus male)
ATGGTACGAAAACTGAAACGAGAGAGGCATGCCACAGCAGCATTATTCGG
TCTTGCAGTTTCGTGTCCCGCAGCGTTGGCACTTTGTCCCTCTATCCCCC
CCCTCGATAACGCCAAACACCTCTCCCGAAGAGGCGCTCTATCAGATGAT
CCACTTCCACAGCAGGTGCCTGCCGCGAGATGGTGCAGCGAGCTTTGCTT
TCCAGGCAGAGTAGCGCCATGCAGACTTCCTTCTACTTGCGTTGAGCGGA
GAAGAAACCCCTGGCGACTGGGAGCATCAAGGCGAGACCCCAGCCAAGCT
CAAGGCGACGGGGAAGTGGAACAAAATCAGGAAGAGGGTGGCACGGACAT
TAGGACAGAGGCAATCGGTAGCCGTCTTCCGGCGGCGGCAACTCGCGCCG
CGGCAGCGCCCTTAATAGACCATGGGAAAGAGCCGGAGGAAAAACGGGCG
GCGTTACGTCGCATGAGGCGTAAGGAAAGGGCAAAGATCAAGGTGATCTC
TGACGCCAGCGACAGTAAGAAAGGTAACAGCAGGATGGTACGAAAACTGA
AACGAGAGAGGCATGCCACAGCAGCATTATTCGGTCTTGCAGTTTCGTGT
CCCGCAGCGTTGGCACTTTGTCCCTCTATCCCCCCCCTCGATAACGCCAA
ACACCTCTCCCGAAGAGGCGCTCTATCAGATGATCCACTTCCACAGCAGG
TGCCTGCCGCGAGATGGTGCAGCGAGCTTTGCTTTCCAGGCAGAGTAGCG
CCATGCAGACTTCCTTCTACTTGCGTTGAGCGGAGAAGAAACCCCTGGCG
ACTGGGAGCATCAAGGCGAGACCCCAGCCAAGCTCAAGGCGACGGGGAAG
TGGAACAAAATCAGGAAGAGGGTGGCACGGACATTAGGACAGAGGCAATC
GGTAGCCGTCTTCCGGCGGCGGCAACTCGCGCCGCGGCAGCGCCCTTAAT
AGACCATGGGAAAGAGCCGGAGGAAAAACGGGCGGCGTTACGTCGCATGA
GGCGTAAGGAAAGGGCAAAGATCAAGGTGATCTCTGACGCCAGCGACAGT
AAGAAAGGTAACAGCAGG
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