mRNA_F-serratus_M_contig1002.137.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1002.137.1
Unique NamemRNA_F-serratus_M_contig1002.137.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1002.137.1 vs. uniprot
Match: A0A6G0WE08_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WE08_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.360e-23
Identity = 116/352 (32.95%), Postives = 156/352 (44.32%), Query Frame = 2
Query:  494 WREKPWVIFDALQIFALMWSLSQPWPWPRPWLIKTRWTVAVNLDVVSLHDAAMTSTGPGTFTSP---WGELQGYMFLACLLTLFPIGLQMLWRFRERLAAWWLDRTTLNRRNVVSRREIKTATLPRRQLVFARITLERALLLAANLLYLPVVLAVVRLVVCDDD----------GTLSVDPTTSCRSSSLFLA-----AAFGIAVVVSFTVVLDKYTTRIANVVLTYGHRVDHERFLQRVEIEYALNLCDAWAVDHMWLVGSFRRHAIRYRVYMMYMKLTLVLVYAFGR-HYIATQA------------VLFWGVLSFWSVWNYARPPYRCPSSNRLHVVLYATLWTNSFLG 1456
            W EK  V  D LQ++ +MW +SQ WPWP  WL  TR T+  +LD  SL     T  G G    P   WGEL GY   A +  L P            LAA+W    T  R N  +    KTA L            E  LLL   +LYLP+ LAV RL  C D            T+SVDP+  C  +   LA     AA G   +V F  VL K   RI  V       +  ERF+Q  E+ Y +NL D +   ++    SF R  +   V    +KL L+ +++FGR  Y +T++            +LF G  S WS       P+RC S+ +L +++   L  +  +G
Sbjct:   48 WLEKLLVAVDGLQMYGIMWQMSQIWPWPSRWLASTRSTLIFSLDFFSLLP---TGAGMGQDKPPFSHWGELDGYWVYALVFALLPYA---------ALAAYWTLFLTW-RSNGDAHFLSKTAYL------------ENKLLLLFQVLYLPIGLAVCRLWNCQDTVNPLDVTEVISTMSVDPSFDCDGTPQILALSCITAALGAPFLVGFPFVLYK---RIMIVGAYADKCLKQERFVQTKELAYLVNLSDDYDTLYVAQYASFTRPMMTLPVQTCLVKLALLGIFSFGRSRYPSTESESYQGTCLCIVLLLFLGHRSLWSP-----SPFRCRSTAQLSLLIDVILAFDGIMG 366          
BLAST of mRNA_F-serratus_M_contig1002.137.1 vs. uniprot
Match: A0A6A4FIV2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4FIV2_9STRA)

HSP 1 Score: 103 bits (257), Expect = 9.380e-21
Identity = 77/203 (37.93%), Postives = 95/203 (46.80%), Query Frame = 2
Query:  455 GVNWARL-------SSLNPLWREKPWVIFDALQIFALMWSLSQPWPWPRPWLIKTRWTVAVNLDVVSLHD--AAMTSTGPGTFTSPWGELQGYMFLACLLTLFPIGLQMLWRFRERLAAWWLDRTTLNRRNVVSRREIKTATLPRRQLVFARITLERALLLAANLLYLPVVLAVVRLVVCDDDGTLSVDPT-TSCRSSSLFLA 1033
            G  W+RL         ++  W EK  V+ D +Q+FALMW LSQPWPWP  WL  TRW  A  LD  S     AAM ST      S WGEL  Y   A +  L P      W     + A  + + +  R+              R   +   +T E  LL     LY+PV LAV+RLV CD DG +SVDPT  SC  +   LA
Sbjct:   28 GAYWSRLLVVPSRSRQVSRFWLEKALVLTDGVQLFALMWQLSQPWPWPARWLEATRWVNAFTLDFFSFRTTGAAMGSTSQSF--SLWGELPNYWLYALVWALLP------W---SGVLALQVAKRSWTRQG-------------RSDFLLLSVTWENVLLQLLQFLYVPVGLAVLRLVNCDADGAVSVDPTGMSCGGAGHVLA 206          
BLAST of mRNA_F-serratus_M_contig1002.137.1 vs. uniprot
Match: A0A662X3Y0_9STRA (Kinesin motor domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X3Y0_9STRA)

HSP 1 Score: 101 bits (252), Expect = 5.540e-18
Identity = 84/263 (31.94%), Postives = 109/263 (41.44%), Query Frame = 2
Query:  494 WREKPWVIFDALQIFALMWSLSQPWPWPRPWLIKTRWTVAVNLDVVSLHDAAMTSTGPGTFTSPWGELQGYMFLACLLTLFPIGLQMLWRFRERLAAWWLDRTTLNRRNVVSRREIKTATLPRRQLVFARITLERALLLAANLLYLPVVLAVVRLVVCDDDGTLSVDPTT--SCRSSSLFLAA---AFGI--AVVVSFTVVLDKYTTRIANVVLTYGHRVDHERFLQRVEIEYALNLCDAWAVDHMWLVGSFRRHAIRYRVYM 1261
            W EK  V+ D  QIFALMW LSQPWPWP  WL+ TRW    NLD  S      T    G  +   G                        F  + A W                                   E  LL A  L+YLPV LAV+RLV C+ DG +SVDP +  +C  +   LA     FG+  + ++ F  VL +   R     LT      HE FLQ  E+E+ L   +A+   +M    S+RRH++ + V M
Sbjct:   49 WLEKAIVLVDDAQIFALMWQLSQPWPWPARWLVVTRWVNVFNLDAFSFRS---TGAAMGATSQSQGRSD---------------------FLLQTAKW-----------------------------------ENVLLQALQLVYLPVGLAVLRLVNCNADGAVSVDPMSMGTCWGAGHLLAVLSVTFGVGGSFLLGFPWVLHQSIQRY----LTQSSAEKHEHFLQGKELEFMLGTSEAYLELYMPQYASYRRHSVGFPVQM 248          
BLAST of mRNA_F-serratus_M_contig1002.137.1 vs. uniprot
Match: A0A3F2RMZ3_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RMZ3_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.300e-15
Identity = 41/93 (44.09%), Postives = 48/93 (51.61%), Query Frame = 2
Query:  458 VNWARLSSLNPLWREKPWVIFDALQIFALMWSLSQPWPWPRPWLIKTRWTVAVNLDVVSLHDAAMTSTGPGTFTSPWGELQGYMFLACLLTLF 736
            V +AR   +   W EK  V  D +Q+FALMW LSQPWPWP  WL+ TRWT A NLD  S               S WGE+  Y   A +  LF
Sbjct:   35 VVFARRRQVCRFWLEKAVVFTDGVQVFALMWQLSQPWPWPARWLLATRWTNAFNLDFFSFRATGAAMGASSQSFSLWGEMHNYWLYALMWALF 127          
BLAST of mRNA_F-serratus_M_contig1002.137.1 vs. uniprot
Match: A0A0G4ICJ1_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4ICJ1_9ALVE)

HSP 1 Score: 83.6 bits (205), Expect = 1.900e-12
Identity = 89/345 (25.80%), Postives = 151/345 (43.77%), Query Frame = 2
Query:  443 LNDLGVNWARLS-SLNPLWREKPWVIFDALQIFALMWSLSQPWPWPRPWLIKTRWTVAVNLDVVSLHDAAMTSTGPG-TFTSPWGELQGYMFL-ACLLTLFPIGLQMLWRFRERLAAWWLDRTTLNRRNVVSRREIKTATLPRRQLVFARITLERALLLAANLLYLPVVLAVVRLVVCDDDGTLSVDPTTSCRSS-SLFLAAAFGIAVVVSFTVVLDKYTTRIANVVLTYGHRVDHERFLQRVEIEYALNLCDAWAVDHMWLVGSFRRHAIRY--RVYMMYMKLTLVLVYAFGRHYIATQAVLFWGVLSF--WSVWNYARPPYRCPSSNRLHVVLYATLWTNSFL 1453
            L+++G ++A    S++  W EK  +IFDA+QI+A+MW   QP   P  W ++T+W  A N+D+++L    +       T++    +   YM +      LF   LQ  W    R      D  TL  R+ +                       R  L+   L Y+P+ + V+ L  C D   L       CR++  L++      A  +   +    +T  +    L +     HE+++Q  E EY L L D W V H WL  SFR+   R   R  ++ +KL +VL + F +     + ++   +L    +S+  + +  YRC SS  L  + +  L+  +F+
Sbjct:  114 LSNIGWDYASARRSVDLYWIEKFLLIFDAIQIWAVMWPFYQP-HLPFQWTLRTQWATAFNIDILNLSFRTLPKHSHRVTWSLNATQRMIYMLVWTAAPFLFFFALQS-WNRTRRHQNGGAD-FTLRLRSYI----------------------RRVGLIVGILFYMPLAMGVLPLAFCQDQAEL-------CRTNVPLWITRVVCGATTMCVLLAFPFWTATLIKQQLIFQEDAPHEQYVQLKETEYLLLLNDTWEVHHFWLFTSFRKTFGRVYNRPLVLLLKLAVVLCFCFVQSSSMEEPMVLASLLVIFVYSICTFLKVVYRCKSSWVLQQLFFWNLFAYAFV 426          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1002.137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G0WE08_9STRA1.360e-2332.95Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A6A4FIV2_9STRA9.380e-2137.93Uncharacterized protein n=1 Tax=Phytophthora rubi ... [more]
A0A662X3Y0_9STRA5.540e-1831.94Kinesin motor domain-containing protein n=1 Tax=No... [more]
A0A3F2RMZ3_9STRA1.300e-1544.09Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
A0A0G4ICJ1_9ALVE1.900e-1225.80Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1002contigF-serratus_M_contig1002:220068..226689 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score758.8
Seed ortholog evalue2.6e-216
Seed eggNOG ortholog2880.D8LTA4
Hectar predicted targeting categoryother localisation
EggNOG OGs28N4Y@1,2QUQ3@2759
Ec32 ortholog descriptiontransmembrane protein, putative
Ec32 orthologEc-12_005820.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons8
Model size3683
Cds size2532
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1002.137.1prot_F-serratus_M_contig1002.137.1Fucus serratus malepolypeptideF-serratus_M_contig1002 220879..225852 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928794.3027487-UTR-F-serratus_M_contig1002:220067..2208781622928794.3027487-UTR-F-serratus_M_contig1002:220067..220878Fucus serratus maleUTRF-serratus_M_contig1002 220068..220878 -
1690962574.995068-UTR-F-serratus_M_contig1002:220067..2208781690962574.995068-UTR-F-serratus_M_contig1002:220067..220878Fucus serratus maleUTRF-serratus_M_contig1002 220068..220878 -
1622928794.4325376-UTR-F-serratus_M_contig1002:225852..2261061622928794.4325376-UTR-F-serratus_M_contig1002:225852..226106Fucus serratus maleUTRF-serratus_M_contig1002 225853..226106 -
1690962575.0954368-UTR-F-serratus_M_contig1002:225852..2261061690962575.0954368-UTR-F-serratus_M_contig1002:225852..226106Fucus serratus maleUTRF-serratus_M_contig1002 225853..226106 -
1622928794.4460835-UTR-F-serratus_M_contig1002:226603..2266891622928794.4460835-UTR-F-serratus_M_contig1002:226603..226689Fucus serratus maleUTRF-serratus_M_contig1002 226604..226689 -
1690962575.1047897-UTR-F-serratus_M_contig1002:226603..2266891690962575.1047897-UTR-F-serratus_M_contig1002:226603..226689Fucus serratus maleUTRF-serratus_M_contig1002 226604..226689 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928794.3200948-CDS-F-serratus_M_contig1002:220878..2210461622928794.3200948-CDS-F-serratus_M_contig1002:220878..221046Fucus serratus maleCDSF-serratus_M_contig1002 220879..221046 -
1690962575.0062027-CDS-F-serratus_M_contig1002:220878..2210461690962575.0062027-CDS-F-serratus_M_contig1002:220878..221046Fucus serratus maleCDSF-serratus_M_contig1002 220879..221046 -
1622928794.3331063-CDS-F-serratus_M_contig1002:221255..2215671622928794.3331063-CDS-F-serratus_M_contig1002:221255..221567Fucus serratus maleCDSF-serratus_M_contig1002 221256..221567 -
1690962575.0269914-CDS-F-serratus_M_contig1002:221255..2215671690962575.0269914-CDS-F-serratus_M_contig1002:221255..221567Fucus serratus maleCDSF-serratus_M_contig1002 221256..221567 -
1622928794.3462644-CDS-F-serratus_M_contig1002:222193..2222711622928794.3462644-CDS-F-serratus_M_contig1002:222193..222271Fucus serratus maleCDSF-serratus_M_contig1002 222194..222271 -
1690962575.0382233-CDS-F-serratus_M_contig1002:222193..2222711690962575.0382233-CDS-F-serratus_M_contig1002:222193..222271Fucus serratus maleCDSF-serratus_M_contig1002 222194..222271 -
1622928794.36269-CDS-F-serratus_M_contig1002:222726..2229151622928794.36269-CDS-F-serratus_M_contig1002:222726..222915Fucus serratus maleCDSF-serratus_M_contig1002 222727..222915 -
1690962575.0489829-CDS-F-serratus_M_contig1002:222726..2229151690962575.0489829-CDS-F-serratus_M_contig1002:222726..222915Fucus serratus maleCDSF-serratus_M_contig1002 222727..222915 -
1622928794.3807008-CDS-F-serratus_M_contig1002:223313..2240311622928794.3807008-CDS-F-serratus_M_contig1002:223313..224031Fucus serratus maleCDSF-serratus_M_contig1002 223314..224031 -
1690962575.0608637-CDS-F-serratus_M_contig1002:223313..2240311690962575.0608637-CDS-F-serratus_M_contig1002:223313..224031Fucus serratus maleCDSF-serratus_M_contig1002 223314..224031 -
1622928794.3990505-CDS-F-serratus_M_contig1002:224319..2244751622928794.3990505-CDS-F-serratus_M_contig1002:224319..224475Fucus serratus maleCDSF-serratus_M_contig1002 224320..224475 -
1690962575.0738509-CDS-F-serratus_M_contig1002:224319..2244751690962575.0738509-CDS-F-serratus_M_contig1002:224319..224475Fucus serratus maleCDSF-serratus_M_contig1002 224320..224475 -
1622928794.4154372-CDS-F-serratus_M_contig1002:224941..2258521622928794.4154372-CDS-F-serratus_M_contig1002:224941..225852Fucus serratus maleCDSF-serratus_M_contig1002 224942..225852 -
1690962575.085958-CDS-F-serratus_M_contig1002:224941..2258521690962575.085958-CDS-F-serratus_M_contig1002:224941..225852Fucus serratus maleCDSF-serratus_M_contig1002 224942..225852 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1002.137.1

>prot_F-serratus_M_contig1002.137.1 ID=prot_F-serratus_M_contig1002.137.1|Name=mRNA_F-serratus_M_contig1002.137.1|organism=Fucus serratus male|type=polypeptide|length=844bp
MPTPLNVSYGDIEHGRRTQLFPSKHTTNATRVTLLNDLGVNWARLSSLNP
LWREKPWVIFDALQIFALMWSLSQPWPWPRPWLIKTRWTVAVNLDVVSLH
DAAMTSTGPGTFTSPWGELQGYMFLACLLTLFPIGLQMLWRFRERLAAWW
LDRTTLNRRNVVSRREIKTATLPRRQLVFARITLERALLLAANLLYLPVV
LAVVRLVVCDDDGTLSVDPTTSCRSSSLFLAAAFGIAVVVSFTVVLDKYT
TRIANVVLTYGHRVDHERFLQRVEIEYALNLCDAWAVDHMWLVGSFRRHA
IRYRVYMMYMKLTLVLVYAFGRHYIATQAVLFWGVLSFWSVWNYARPPYR
CPSSNRLHVVLYATLWTNSFLGMMTGYGFRSPIVVAWTQFRCLAVINCVG
VVAALAMVVAAPIGEVLERCRERTRRWCPAFYCLRHRTPTETEAPEDAKL
THGGDGSSESENEDGRRHRTDEVLAGSRPTLALLLCLARLPRRREWVDAV
RRANELRLQCETCPKELEPRRALEAHMRCVWRLWADARAEESTLEPALGS
ALERLALVHAQVCRDAIGPGLTVELEETLLDPEVQEAIRRRRRAQILMTD
RQRRIMLKLLAITAFLNHRDLRDMSETTLCRLRWETEQILSRPQASNTRA
HIKTVCMQWKRLIQKSERDFERIHGYPPNPSDKSRNSEWYESYKKLRLAR
NALPEKTIVFSDDRTLPPRGASKGTGFFFDRDGLIATSTAAAATNDRLSI
LIHATEQVFLSGDQHPQGRDTNNNNNNTELVEAEACRKQWKRVIREWEAD
FEERNGTAPEAGDKQAIRSYYECYGSLRQFISGGRTSNHLEYV*
back to top

mRNA from alignment at F-serratus_M_contig1002:220068..226689-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1002.137.1 ID=mRNA_F-serratus_M_contig1002.137.1|Name=mRNA_F-serratus_M_contig1002.137.1|organism=Fucus serratus male|type=mRNA|length=6622bp|location=Sequence derived from alignment at F-serratus_M_contig1002:220068..226689- (Fucus serratus male)
CAAATTTCGACTTCGCGGTCGACGAGGGAAAGGAATGGCTGAATCCTTCT CGCGAGAAAAATCAAGGCACGCATCGCAGAAGGAAGGTGAATGAGAAATC CTGTGCGACCTTCCTCCTGTGTGACCCTGGCTGGTACCAGTACGTCCAAC GAACCTGATGTCCAGAATTAATGGGAAGAAAACACGCTCAAGCACACTGT GAATTATAGTATGGCGTACTGCGTAGTCTAATCGATTTTTCGAAAACTGA GTCGTTGGAGGACCAGTTTTCACTGCGAGAACGTGGACGCGGCTCCCCTT ACCTTGCCGGCGCTACTCCCTCTCTCTGTGTAGTATCGGCGCTACTCCAT ACCGTATCTCTATAGTGTTGATTCTTCTACATTTCCTTTTTTTTTCAACT CGTCAACCCCCCAAAAAAACAGAATGCCCTACTGCTAGGGCCCCTAGAGT TTAAAGAAAAATCTGAACGCATCCCCCATTATGTTACTCTATGCGTGACT CGTACTTCAAGTCAGCGCTAACTCAGAACTGTCATTTTTTTGTGTCGTTT CGATTGCCGTTACTCCTGCGTTACTGTATACAGTATACAGTGTTTAACAT GATTTGACGTCGGGTTTCGAATCAGAAAACGGGGTGGTACGGGTGCTGCT TACTGCGGAGTTCTTCTCGAGAGTCCCGGACCTCGATGAGAAGGGGCGAA GCCAGAAACAGACGCTCGAAGTCGCATCGATCTATTTTTTATTAGGTCAG TAATCTATCTCCTCGTGCCCCAGGGGACGAAAGACAAGCAGCGGCCTAGC CTCAAACTTCACGGCGAAACATTAAGCAGCAGTGTCGATGCCGACTCCGC TGAATGTTTCGTATGGCGATATTGAGCATGGCCGTCGCACTCAGCTGTTT CCGTCGAAACACACTACGAACGCGACCAGAGTTACTCTTCTTAACGATCT TGGCGTCAACTGGGCCCGCCTGAGCTCACTGAACCCCCTGTGGAGAGAAA AGCCGTGGGTGATCTTCGACGCTCTCCAGATATTCGCTCTGATGTGGTCC TTGAGCCAGCCGTGGCCTTGGCCTCGACCGTGGCTTATTAAAACAAGATG GACTGTTGCGGTCAACCTGGACGTCGTGAGCCTCCACGACGCTGCGATGA CGTCAACGGGACCGGGCACCTTCACTTCTCCCTGGGGAGAGTTACAGGGA TATATGTTCTTGGCATGTTTGCTTACGTTATTCCCGATCGGGCTTCAAAT GCTGTGGCGCTTCCGAGAACGGCTTGCAGCTTGGTGGTTGGATCGAACGA CCCTTAACCGTCGCAACGTCGTAAGCAGGAGGGAAATAAAGACTGCCACG CTCCCGCGCCGGCAGCTGGTGTTCGCACGGATCACCTTGGAGCGCGCGCT ATTGCTTGCGGCGAATCTTCTCTATCTCCCAGTGGTGCTCGCCGTGGTTC GGTTGGTTGTTTGTGACGACGACGGGACTCTATCGGTAGACCCGACCACC AGCTGCCGCAGCTCCTCCTTGTTCCTGGCAGCAGCTTTCGGGATCGCGGT TGTCGTATCCTTCACCGTGGTTCTCGACAAGTACACCACGAGAATCGCGA ATGTCGTGTTAACGTACGGGCACAGAGTCGACCACGAGAGGTTCCTGCAG CGAGTAGAGATCGAGTACGCGCTAAATTTGTGCGACGCCTGGGCGGTGGA TCACATGTGGTTGGTCGGCAGCTTTCGCCGCCACGCCATTCGCTACAGGC GAGGCCAATAATGAGAGCGCGTCCACAACGGAAGCTGAGAATCAAATAGA ACATACCCGGTATATAGTAACGCTATTTATACACGCCATACATACCACAT GACCCCTCTTGTGCCCAAGTTCAGCCTTCTGAGCGCACGTTTATTAGCCT GCCCACTCGGTAGAGAGTGCACACCAGAAGGAGGCGTTATTGTGAATCGT CTAGAAAAACAGGCGCGCGCGTGTACATCTCAGAAATGTCTTATCTACAG ATGATTCGACCAAAGCGTTGTGACGAGCTGCTCGGTGGTTTTGATACTTT TTTTTACTTTAGTCTCTCCCCGCAAACATATGACGCTTGTTCAAGCTCCT CGCCAATGCAAACGCGGCGTGGTTCGACTTCGGTCGTCTTAAGTACGTAC ACGACATATTTTTCCGCTGCATATATATACATATATCACTTTTTTCCCCC CGGCAAATCAACAGGGTCTACATGATGTATATGAAGCTGACGCTGGTCCT GGTCTACGCCTTCGGCCGACACTACATTGCAACCCAAGCTGTCCTGTTCT GGGGGGTGCTTAGCTTCTGGTCGGTGTGGAATTATGCTCGTCCGCCGTAC CGCTGCCCCAGCTCTAACAGGCGGGCGCCCGAGACGGCTACTTTCAAGTT TTTACGACCGGTTGTTTCGTTGCCTCAGATCGGGCCCCTCAAACATCCTG TGTTGAGGGTAACCCCCCCCCCTCCCCCCTACCAATAGATGGGGAACTAG CTTTCAAGAGCTGTTTAATTCGCGCCACCTGGTGGGGTGCACAAGCAGCG GTAACGGCCGGCACAAAAAAAGAGGCAGGGGATGTGTCCCTCAACCTACA GCACGGCGCGTATTTTTTTATTTACCTGTCCTTCTCCCACACAACCCCTC TTTTTCAGGCTACACGTGGTGCTTTATGCAACACTGTGGACGAATTCTTT CCTCGGTATGATGACGGGCTACGGCTTCCGGAGTCCAATAGTCGTCGCCT GGACTCAGTTCCGCTGCCTGGCGGTTATTAACTGCGTCGGCGTGGTAGCC GCCTTGGCCATGGTCGTCGCGGCACCAATCGGAGAGGTTCTTGAACGTTG CCGAGAGAGGACGAGGAGGTGGTGCCCCGCATTTTACTGCCTTCGTCACC GCACACCTACCGAGACCGAAGCACCGGAAGACGCAAAGTTAACGCACGGG GGTGACGGAAGCTCTGAGAGTGAAAACGAAGATGGACGTCGTCATCGTAC CGACGAAGTACTGGCAGGGTCTCGGCCGACCCTGGCTTTGCTTCTATGTC TGGCCCGCCTCCCGCGTAGACGGGAGTGGGTGGACGCCGTCAGAAGGGCC AACGAATTGCGGTTACAGTGCGAGACTTGCCCCAAGGAGCTGGAGCCGAG ACGCGCGCTGGAGGCGCACATGAGGTGCGTGTGGCGCCTCTGGGCTGACG CGAGGGCGGAGGAGAGCACTCTGGAGCCGGCGCTGGGCTCGGCGCTGGAA CGTCTCGCCCTCGTTCATGCGCAGGTGTGCAGAGATGCGATCGGACCTGG CCTCACCGTAGAGCTAGAAGAAACACTTCTCGACCCGGAGGTGCAGGAAG CAATACGGCGGCGGAGGCGGGCTCAGGTGATTGCAGAAACGAGAAGGAAG AACTGACGATGCGATGTTTCTGGGGGCGCGTTCGAGGAACGATACACGAC ACGAAGACGAGGAAAGACGCTGTCGCTTGATCGTTTTACGAAACGCCAGT TCCTCTGCGGACAAGCGTGTTTGTATACAGGAGGTTGTGCTTGTCGAAAG TGAACATGTCATGCCGTACATCGTCGGCGCATTTCCAGTCGTGTTTGGTA ACCGTTTCGTTTTCTCCGAACTCATAAACGTTCCAGATCACCTGTGAGTC ATTTTAGTCTCAAATCAAGGCTTGACCATTTATCAGAGTCACGAAACTCG TTCTGCAACTCGTTAAGCGCTTGGTATTACTATTTATCTGTCCCACAACA TAAACCTGCCGACTTCGCTGAAAGATACTCATGACAGATCGTCAAAGACG GATCATGTTGAAGCTACTAGCGATCACCGCATTCCTCAACCACCGCGACC TCCGCGACATGTCGGAGACAACCCTCTGCCGGCTTCGGTGGGAGACCGAA CAAATCTTGAGTCGACCACAGGCTTCAAACACGCGAGCGCACATCAAAAC AGTGTGCATGCAGGCGAGTTCTAATACGGTCCGTGCTTAAGGCTGGAATG GTCGGCTTTTCGTGAGGTGGGACCGTTAATCGCAAAGTTGGCGCAAGGTT GGATAAGGCCAACAACACGAGAGCCCTTTCACGAGGCAATTGCGGCACAT CGAAGCGTCTTTGGAGAGGTAATCAAGCAAAAATTGTGTTGAGAATTACG AAACGGTGTTCAACTCCGTCGATGGAGACGTCGCCTCTGTACGATGTTTA GCGGGGGGGGGGGCGCCCGCTAAATCATACCTTGGTCCCGGTGACAGGAG ACAAGTCGCAAACACTCGCGCTCTGATGGCGTCGCTAACATCCAATCCTG CCTCCAAACATTTTATTGGCGGTGAGAATATTTTGGACTTCTCGAGCGTC ACTCCAGCGCGCTCTCCTCGAACCGAAATCATAACCCAACCCAAACCACT GCCGCGTCCTGTCCTCAGTGGAAGCGCCTCATCCAGAAAAGCGAGCGCGA CTTCGAGCGCATTCATGGCTACCCCCCAAACCCGTCCGACAAATCGGTGA GACCCTGGTAACTGCAAGACGGTGTAGTCCACTTTTGGTTCCGCAGCGCA CGGGTCAACTTGGTCTCGCCGAAAAGTACACGTGCTACTTAGTACAGTAC CAGGCACATGTTATATGAGATATACAAAATTACCTCTTACAATATTATTA GGGAATTGCTTCGCTCCTCCCACTTCCCGAAGTCAGATATCAAGCGGCGA ATGTATTACATCTTTAATATTTTCGAGAGTGGATCGAACGTCGAGCACTA CGAGTTCTACTCTGTTGTAAAAGGAAAATCAGCTTAGCACGGTACCCAGC CCGATTTGATCGATTATCCACGTTTCAGCAAGGAAGAATATCGTGACCCG TTCAAGTCGCCAGAAGAGTGATCGCTACCATAACTATGATATCGACTCTT CCGAACGGCACGGTTGGCACAAGGAGGGAGCATCAACCAGCCAAATGTTA CAGATGACGCCCTCGTAAACAAGAAGCCGGGAGTTGTCGTTTGGTTGCAA GAGATAATGGATCCGATCCTTGTTTTAGCTTTACAAACTCTATTAAAACA ACGCAAAACCTCCCACGTTCCCTCCCGTTTCTATAGTTTAATCCTATAAC GCCTGCTCGCCGAAACGTGCAGAGGAACAGTGAGTGGTACGAGTCCTACA AGAAACTTCGATTAGCAAGGAACGCGCTTCCGGAAAAAACAATCGTGTTT TCCGACGATCGGACCTTGCCTCCGCGCGGCGCAAGCAAAGGCACCGGCTT CTTCTTCGACCGTGATGGCCTTATCGCGACTTCGACGGCGGCGGCGGCGA CGAACGATCGCCTCTCGATCCTCATCCACGCTACGGAACAGGTGTTTCTG TCCGGCGACCAACATCCGCAGGGGCGTGACACCAACAACAACAACAACAA CACGGAGCTGGTCGAGGCGGAGGCGTGTCGTAAGGTCTGAGACCTGGTTG TGTAAAACCCATAAATCCATACTTCCTGCTTATAGCGTTCCAGAGTTTAG GGGAGGGGGCCCTTCTCCCGGATTCGTTCACGCGCCCCTTCCCCCGTAGA GAAAAAAAACTGACAGCAACTTACACACGCTTTACACACTTGGCGGATGC TGTTTCTGATCGTTTCAAACGCTACCGACTGTACGGGCATCAGCAATGGA AGCGGGTTATCCGAGAGTGGGAGGCGGACTTTGAGGAGCGGAACGGCACG GCGCCCGAGGCGGGCGACAAACAGGCCATCAGGAGCTACTACGAGTGTTA CGGGAGCCTGAGGCAGTTCATCTCTGGAGGCCGCACATCCAACCACCTCG AGTACGTGTAGTTTAGAAGAGTTTGAATCGAGACGGGTTGACTAACTATT AATATACGCACTTGTCTATAATAGACCTAGTATAGTCGCTCTGGTAAGAT AATTCGGCACAACACGTTGTTAATGGTTCTGCTTTCATCATTCAGTTGTT TGGACCGTAACAATCCTTGGGAGGATGGATAGACGCACGTTTTCTGCGTC CCGTGTTGAGAGTTGTAAGGCTTGCCACTTCTTACTTGAAAGCGTTGTCG CGGCGGAGAATTTCGTGTAGAGGAGCTCGAGGCGGAGGCAGTTTTCGCTG GAAAGGATGATATTTTTCTGGCCGCAAGCGTCTACGGCCGACAACATCCA GTATGCTCCAATCCACGTTCGCTTCTTGAATATAGCAGTATAATGGGTCA TTCACGTCTTGCACCCCCTGCCAATTTAGGCTCAATGGGCTCTTAACGGT AGAGATCTTGCCAAGGTTTCCGCAACAATGTCCACCGAGTTCCAGTTCCG ATTTCAATACCAACTCTATTTTCGCGCAACTCTTTGAAGTCTTGGATTTG AGGACCGTTGATGCTTCCAACAAGGCTGACTATCGACGAGGCGACATATG AGATCGGGTAATATGTGGAGACGCGAGATCGATCGAAGGGCAATTCGACC CCGAAGCGTTATTGCTCGAAAAGCACATCCGTGCAAGCGCAGTACCCGCG TCCTTTTATAAGGCCATACATATTTCCCTTAGTTGCAAAGGAGGCTATTA ATCGCAAGCGTATATTTATATTATTAAGAGGTCGTCTGCTCGTACTCCGA CCACAGTCCCCCCCCACCCGTT
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1002:220068..226689-

>mRNA_F-serratus_M_contig1002.137.1 ID=mRNA_F-serratus_M_contig1002.137.1|Name=mRNA_F-serratus_M_contig1002.137.1|organism=Fucus serratus male|type=CDS|length=5064bp|location=Sequence derived from alignment at F-serratus_M_contig1002:220068..226689- (Fucus serratus male)
ATGCCGACTCCGCTGAATGTTTCGTATGGCGATATTGAGCATGGCCGTCG
CACTCAGCTGTTTCCGTCGAAACACACTACGAACGCGACCAGAGTTACTC
TTCTTAACGATCTTGGCGTCAACTGGGCCCGCCTGAGCTCACTGAACCCC
CTGTGGAGAGAAAAGCCGTGGGTGATCTTCGACGCTCTCCAGATATTCGC
TCTGATGTGGTCCTTGAGCCAGCCGTGGCCTTGGCCTCGACCGTGGCTTA
TTAAAACAAGATGGACTGTTGCGGTCAACCTGGACGTCGTGAGCCTCCAC
GACGCTGCGATGACGTCAACGGGACCGGGCACCTTCACTTCTCCCTGGGG
AGAGTTACAGGGATATATGTTCTTGGCATGTTTGCTTACGTTATTCCCGA
TCGGGCTTCAAATGCTGTGGCGCTTCCGAGAACGGCTTGCAGCTTGGTGG
TTGGATCGAACGACCCTTAACCGTCGCAACGTCGTAAGCAGGAGGGAAAT
AAAGACTGCCACGCTCCCGCGCCGGCAGCTGGTGTTCGCACGGATCACCT
TGGAGCGCGCGCTATTGCTTGCGGCGAATCTTCTCTATCTCCCAGTGGTG
CTCGCCGTGGTTCGGTTGGTTGTTTGTGACGACGACGGGACTCTATCGGT
AGACCCGACCACCAGCTGCCGCAGCTCCTCCTTGTTCCTGGCAGCAGCTT
TCGGGATCGCGGTTGTCGTATCCTTCACCGTGGTTCTCGACAAGTACACC
ACGAGAATCGCGAATGTCGTGTTAACGTACGGGCACAGAGTCGACCACGA
GAGGTTCCTGCAGCGAGTAGAGATCGAGTACGCGCTAAATTTGTGCGACG
CCTGGGCGGTGGATCACATGTGGTTGGTCGGCAGCTTTCGCCGCCACGCC
ATTCGCTACAGATGCCGACTCCGCTGAATGTTTCGTATGGCGATATTGAG
CATGGCCGTCGCACTCAGCTGTTTCCGTCGAAACACACTACGAACGCGAC
CAGAGTTACTCTTCTTAACGATCTTGGCGTCAACTGGGCCCGCCTGAGCT
CACTGAACCCCCTGTGGAGAGAAAAGCCGTGGGTGATCTTCGACGCTCTC
CAGATATTCGCTCTGATGTGGTCCTTGAGCCAGCCGTGGCCTTGGCCTCG
ACCGTGGCTTATTAAAACAAGATGGACTGTTGCGGTCAACCTGGACGTCG
TGAGCCTCCACGACGCTGCGATGACGTCAACGGGACCGGGCACCTTCACT
TCTCCCTGGGGAGAGTTACAGGGATATATGTTCTTGGCATGTTTGCTTAC
GTTATTCCCGATCGGGCTTCAAATGCTGTGGCGCTTCCGAGAACGGCTTG
CAGCTTGGTGGTTGGATCGAACGACCCTTAACCGTCGCAACGTCGTAAGC
AGGAGGGAAATAAAGACTGCCACGCTCCCGCGCCGGCAGCTGGTGTTCGC
ACGGATCACCTTGGAGCGCGCGCTATTGCTTGCGGCGAATCTTCTCTATC
TCCCAGTGGTGCTCGCCGTGGTTCGGTTGGTTGTTTGTGACGACGACGGG
ACTCTATCGGTAGACCCGACCACCAGCTGCCGCAGCTCCTCCTTGTTCCT
GGCAGCAGCTTTCGGGATCGCGGTTGTCGTATCCTTCACCGTGGTTCTCG
ACAAGTACACCACGAGAATCGCGAATGTCGTGTTAACGTACGGGCACAGA
GTCGACCACGAGAGGTTCCTGCAGCGAGTAGAGATCGAGTACGCGCTAAA
TTTGTGCGACGCCTGGGCGGTGGATCACATGTGGTTGGTCGGCAGCTTTC
GCCGCCACGCCATTCGCTACAGGGTCTACATGATGTATATGAAGCTGACG
CTGGTCCTGGTCTACGCCTTCGGCCGACACTACATTGCAACCCAAGCTGT
CCTGTTCTGGGGGGTGCTTAGCTTCTGGTCGGTGTGGAATTATGCTCGTC
CGCCGTACCGCTGCCCCAGCTCTAACAGGGTCTACATGATGTATATGAAG
CTGACGCTGGTCCTGGTCTACGCCTTCGGCCGACACTACATTGCAACCCA
AGCTGTCCTGTTCTGGGGGGTGCTTAGCTTCTGGTCGGTGTGGAATTATG
CTCGTCCGCCGTACCGCTGCCCCAGCTCTAACAGGCTACACGTGGTGCTT
TATGCAACACTGTGGACGAATTCTTTCCTCGGTATGATGACGGGCTACGG
CTTCCGGAGTCCAATAGTCGTCGCCTGGACTCAGTTCCGCTGCCTGGCGG
TTATTAACTGCGTCGGCGTGGTAGCCGCCTTGGCCATGGTCGTCGCGGCA
CCAATCGGAGAGGTTCTTGAACGTTGCCGAGAGAGGACGAGGAGGTGGTG
CCCCGCATTTTACTGCCTTCGTCACCGCACACCTACCGAGACCGAAGCAC
CGGAAGACGCAAAGTTAACGCACGGGGGTGACGGAAGCTCTGAGAGTGAA
AACGAAGATGGACGTCGTCATCGTACCGACGAAGTACTGGCAGGGTCTCG
GCCGACCCTGGCTTTGCTTCTATGTCTGGCCCGCCTCCCGCGTAGACGGG
AGTGGGTGGACGCCGTCAGAAGGGCCAACGAATTGCGGTTACAGTGCGAG
ACTTGCCCCAAGGAGCTGGAGCCGAGACGCGCGCTGGAGGCGCACATGAG
GTGCGTGTGGCGCCTCTGGGCTGACGCGAGGGCGGAGGAGAGCACTCTGG
AGCCGGCGCTGGGCTCGGCGCTGGAACGTCTCGCCCTCGTTCATGCGCAG
GTGTGCAGAGATGCGATCGGACCTGGCCTCACCGTAGAGCTAGAAGAAAC
ACTTCTCGACCCGGAGGTGCAGGAAGCAATACGGCGGCGGAGGCGGGCTC
AGGCTACACGTGGTGCTTTATGCAACACTGTGGACGAATTCTTTCCTCGG
TATGATGACGGGCTACGGCTTCCGGAGTCCAATAGTCGTCGCCTGGACTC
AGTTCCGCTGCCTGGCGGTTATTAACTGCGTCGGCGTGGTAGCCGCCTTG
GCCATGGTCGTCGCGGCACCAATCGGAGAGGTTCTTGAACGTTGCCGAGA
GAGGACGAGGAGGTGGTGCCCCGCATTTTACTGCCTTCGTCACCGCACAC
CTACCGAGACCGAAGCACCGGAAGACGCAAAGTTAACGCACGGGGGTGAC
GGAAGCTCTGAGAGTGAAAACGAAGATGGACGTCGTCATCGTACCGACGA
AGTACTGGCAGGGTCTCGGCCGACCCTGGCTTTGCTTCTATGTCTGGCCC
GCCTCCCGCGTAGACGGGAGTGGGTGGACGCCGTCAGAAGGGCCAACGAA
TTGCGGTTACAGTGCGAGACTTGCCCCAAGGAGCTGGAGCCGAGACGCGC
GCTGGAGGCGCACATGAGGTGCGTGTGGCGCCTCTGGGCTGACGCGAGGG
CGGAGGAGAGCACTCTGGAGCCGGCGCTGGGCTCGGCGCTGGAACGTCTC
GCCCTCGTTCATGCGCAGGTGTGCAGAGATGCGATCGGACCTGGCCTCAC
CGTAGAGCTAGAAGAAACACTTCTCGACCCGGAGGTGCAGGAAGCAATAC
GGCGGCGGAGGCGGGCTCAGATACTCATGACAGATCGTCAAAGACGGATC
ATGTTGAAGCTACTAGCGATCACCGCATTCCTCAACCACCGCGACCTCCG
CGACATGTCGGAGACAACCCTCTGCCGGCTTCGGTGGGAGACCGAACAAA
TCTTGAGTCGACCACAGGCTTCAAACACGCGAGCGCACATCAAAACAGTG
TGCATGCAGATACTCATGACAGATCGTCAAAGACGGATCATGTTGAAGCT
ACTAGCGATCACCGCATTCCTCAACCACCGCGACCTCCGCGACATGTCGG
AGACAACCCTCTGCCGGCTTCGGTGGGAGACCGAACAAATCTTGAGTCGA
CCACAGGCTTCAAACACGCGAGCGCACATCAAAACAGTGTGCATGCAGTG
GAAGCGCCTCATCCAGAAAAGCGAGCGCGACTTCGAGCGCATTCATGGCT
ACCCCCCAAACCCGTCCGACAAATCGTGGAAGCGCCTCATCCAGAAAAGC
GAGCGCGACTTCGAGCGCATTCATGGCTACCCCCCAAACCCGTCCGACAA
ATCGAGGAACAGTGAGTGGTACGAGTCCTACAAGAAACTTCGATTAGCAA
GGAACGCGCTTCCGGAAAAAACAATCGTGTTTTCCGACGATCGGACCTTG
CCTCCGCGCGGCGCAAGCAAAGGCACCGGCTTCTTCTTCGACCGTGATGG
CCTTATCGCGACTTCGACGGCGGCGGCGGCGACGAACGATCGCCTCTCGA
TCCTCATCCACGCTACGGAACAGGTGTTTCTGTCCGGCGACCAACATCCG
CAGGGGCGTGACACCAACAACAACAACAACAACACGGAGCTGGTCGAGGC
GGAGGCGTGTCGTAAGAGGAACAGTGAGTGGTACGAGTCCTACAAGAAAC
TTCGATTAGCAAGGAACGCGCTTCCGGAAAAAACAATCGTGTTTTCCGAC
GATCGGACCTTGCCTCCGCGCGGCGCAAGCAAAGGCACCGGCTTCTTCTT
CGACCGTGATGGCCTTATCGCGACTTCGACGGCGGCGGCGGCGACGAACG
ATCGCCTCTCGATCCTCATCCACGCTACGGAACAGGTGTTTCTGTCCGGC
GACCAACATCCGCAGGGGCGTGACACCAACAACAACAACAACAACACGGA
GCTGGTCGAGGCGGAGGCGTGTCGTAAGCAATGGAAGCGGGTTATCCGAG
AGTGGGAGGCGGACTTTGAGGAGCGGAACGGCACGGCGCCCGAGGCGGGC
GACAAACAGGCCATCAGGAGCTACTACGAGTGTTACGGGAGCCTGAGGCA
GTTCATCTCTGGAGGCCGCACATCCAACCACCTCGAGTACGTGTAGCAAT
GGAAGCGGGTTATCCGAGAGTGGGAGGCGGACTTTGAGGAGCGGAACGGC
ACGGCGCCCGAGGCGGGCGACAAACAGGCCATCAGGAGCTACTACGAGTG
TTACGGGAGCCTGAGGCAGTTCATCTCTGGAGGCCGCACATCCAACCACC
TCGAGTACGTGTAG
back to top