mRNA_F-serratus_M_contig1002.135.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1002.135.1
Unique NamemRNA_F-serratus_M_contig1002.135.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1002.135.1 vs. uniprot
Match: D8LTA3_ECTSI (UBC core domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTA3_ECTSI)

HSP 1 Score: 204 bits (520), Expect = 1.240e-52
Identity = 213/637 (33.44%), Postives = 280/637 (43.96%), Query Frame = 1 
Query:   58 MRVRALSILCQDEANNDGRGRVVELDVKVGSVEFSVAQLRAA--LKNYFHPDRRAIFSRRGVWRGPLHAV------------------LEVVVLPRMDDG-SLALALARAQLSVPRLRNGATFFSRSSPGSTP-APALAAELAPAKVAAGPGAESEHSEGGK-----------------------------NGDLVANATATASSASKPAMDGENDKENCK---GKKHRSTGPKEETWGLKIDV-------VEILAKSGPP------RGPRERRRLSKALLRAGDADRLLLCLGRLEGEAPRSPPGGRADAFDDPAAVAERDFRRREKEKSCQDARLGRDVAKEDVTQEVPLWTPPFPPEEFDDYDEGFVSEGQEFGMNQSLVGASSH----SKGRRRACDGRDGKRHAPGQQESAELLEALRRLLEALGDVALDEDPTAEATAVEDDDGRNGGDDGESRGA--------CEEGEDSRQRRSSAEMGASTAASGVHRG-DTDERLDWEKTACCDCDGDGDRADDDLAEAAAALESSCLRSVCRQYMFGVDWRFISAHGHFYLALLKLLIGILRPIVVGPESALGHRQGWALNDTKKGE---EAKKLLANFLLAPSADCRGLVELLESLCIGLDDLVA 1719
            MR++AL+++ Q +A  +GR    E+D K+   + + A L  +   K+    D++ +FSR G+WRGPL  +                  LE+V+LP  D G SL L+ ARAQLSVP +R       R + G+   A   AA                  E G                                                          CK   G     + PK                 +  L   G        R  RER+RL+ A LRAGD DRLLLCLGRLEGEAP    GGRAD +DDPAAVAER  +RRE     +D   G   AK       P W+PPFPPEEFD  D+    + +++G   SL G   +    S GR+ A  G + ++   G + SA  +EAL RLLEAL     D+       + E++        GE R          C       +R      G   A +  + G +  +RL            D D  DD  A+A A L+ SCLRSVCRQY+FG DWRF+S H  FYLALL+LL  +LRP   GP +  G   G        G     +++ LA  LL PS DC G+V+LL+SLC+ LDDLVA
Sbjct:    1 MRIQALTLVDQSDAGGEGRWETREVDAKLTLPKITSAALLWSDLSKDNLISDKKEVFSRTGIWRGPLSGLPQSTLLELPSAAPPSETTLELVLLPEADGGDSLVLSFARAQLSVPLMRGYRYTLVRPAGGAGGYAIGAAATXXXXXXXXXXXXXXXXKEAGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCKKNDGGTLVPSAPKTSXXXXXXXXXXXXXXXLSSLMADGXXXXXXRLRTQRERQRLAGAALRAGDVDRLLLCLGRLEGEAP-PVHGGRADRYDDPAAVAER-AQRREAGSKGEDGSTGAGAAK----TTTPTWSPPFPPEEFDGLDDEIGMDSEDWGPGASLGGYPPYHVGASGGRKVAGAGEEKRQVNGGSKMSAYHVEALCRLLEALASGGDDDGDCGGIGSGEEEPXXXXRGAGEGREVKQLEAPRDCSGRAAVGRRPGEGAAGCDAAPAADNSGPEGADRLGGGGVXXXXDGVDADYDDDIAAQATATLDGSCLRSVCRQYLFGADWRFVSTHQQFYLALLRLLQEVLRPFN-GPGA--GGDGGGCRRQAAGGAGEPRSRQPLAQSLLRPSVDCPGMVDLLDSLCVALDDLVA 628
[Close]
BLAST of mRNA_F-serratus_M_contig1002.135.1 vs. uniprot
Match: A0A6H5JLB4_9PHAE (UBC core domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLB4_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 2.210e-51
Identity = 228/731 (31.19%), Postives = 300/731 (41.04%), Query Frame = 1 
Query:   58 MRVRALSILCQDEANNDGRGRVVELDVKVGSVEFSVAQLRAA--LKNYFHPDRRAIFSRRGVWRGPLHAV------------------LEVVVLPRMDDG-SLALALARAQLSVPRLR----------NGATFFS--------------------------------------------------------------------RSSPGSTPAPALAAELAPAKVAAGPGAESE-------HSEGGKNGDLVANATAT-----ASSASKPAMDGENDKENCKGKKHRSTGPKE---------ETWGLKIDVVEILAKSGPPRGP----------RERRRLSKALLRAGDADRLLLCLGRLEGEAPRSPPGGRADAFDDPAAVAERDFRRREKEKSCQDARLGRDVAKEDVTQEVPLWTPPFPPEEFDDYDEGFVSEGQEFGMNQSLVGASSH----SKGRRRACDGRDGKRHAPGQQESAELLEALRRLLEALG------------------------------------DVALDEDPTAEATAVEDDDGRNGGDDGESRGACEEGEDSRQRRSSAEMGASTAASGVHRGDTDERLDWEKTACCDCDGDGDRADDDLAEAAAALESSCLRSVCRQYMFGVDWRFISAHGHFYLALLKLLIGILRPIVV------GPESALGHRQGWALNDTKKGE-EAKKLLANFLLAPSADCRGLVELLESLCIGLDDLVA 1719
            MR++AL+++ Q +   +GR    E+D K+   + + A L  +   K+    D++ +FSR G+WRGPL  +                  LE+V+LP  D G SL L+ ARAQLSVP +R          +GA  ++                                                                    + + G T  P+     A    AA  G  +          +G     LV+ A AT     AS ++     G        G+   +   KE         ETWG   D V +L  + P  G           RER+RL++A LRAGD DRLLLCLGRLEGE P    GGRAD +DDPAAVAER  RR    K  +D   G    K       P+W+PPFPPEEFD  D+      ++  +  SL G   +    S GR+ A  G + ++   G + SA  +EAL RLL ALG                                    +   D   TA A AV    GR  G   E    CE          +A    ++   GV      +RL                     A+A AAL+ SCLRSVCRQY+FG DWRF+S H  FYLALL+LL  +LRP         G     G   G A      GE  + + LA  LL PSADC G+V+LL+SLC+ LDDLVA
Sbjct:    1 MRIQALTLVNQSDEGGEGRWETREVDAKLTLPKITSAALLWSDLSKDNLISDKKEVFSRTGIWRGPLSGLPQSTLLELPSAAPPSETTLELVLLPEADGGDSLLLSFARAQLSVPLMRGYRCTLVRPPDGAGGYAVGAAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDCKKNGGGTLVPSAPKTSAKGAAAAPGGCAAATLSSLMAQLDGSLADSLVSTAAATDGADAASQSTAVKYPGTTAAAAAAGEASPAAVSKETTERTERDPETWGFDTDAVALLVAT-PDGGSXXXXXRLRTHRERQRLARAALRAGDVDRLLLCLGRLEGEVP-PVHGGRADRYDDPAAVAERAQRRAAGSKG-EDGSTGAGAGK----TTTPMWSPPFPPEEFDGLDDEIGMYSEDLSLGASLGGYPPYHVGASGGRKAAGAGEEKRQVNGGSKMSAYHVEALCRLLVALGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVKQREAPRDCSGTAAAAAV----GRRPG---EGAAGCE----------AAPAAGNSGREGV------DRLGGGXXXXXXXXXXXXXXXXIAAQATAALDGSCLRSVCRQYLFGADWRFVSTHQQFYLALLRLLREVLRPFNDARPGGDGGGDCRGQAAGGA------GEPRSPQPLARSLLHPSADCPGMVDLLDSLCVALDDLVA 695
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1002.135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTA3_ECTSI1.240e-5233.44UBC core domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JLB4_9PHAE2.210e-5131.19UBC core domain-containing protein n=1 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1002contigF-serratus_M_contig1002:196156..201103 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score213.0
Seed ortholog evalue3.7e-52
Seed eggNOG ortholog2880.D8LTA3
KEGG koko:K10585,ko:K10586
KEGG Pathwayko04120,ko04214,ko04215,map04120,map04214,map04215
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0895@2759
EC2.3.2.23
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons5
Model size1723
Cds size1719
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1002.135.1prot_F-serratus_M_contig1002.135.1Fucus serratus malepolypeptideF-serratus_M_contig1002 196158..201103 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928793.9916875-CDS-F-serratus_M_contig1002:196157..1968981622928793.9916875-CDS-F-serratus_M_contig1002:196157..196898Fucus serratus maleCDSF-serratus_M_contig1002 196158..196898 -
1690962574.8370893-CDS-F-serratus_M_contig1002:196157..1968981690962574.8370893-CDS-F-serratus_M_contig1002:196157..196898Fucus serratus maleCDSF-serratus_M_contig1002 196158..196898 -
1622928794.0066066-CDS-F-serratus_M_contig1002:197354..1974471622928794.0066066-CDS-F-serratus_M_contig1002:197354..197447Fucus serratus maleCDSF-serratus_M_contig1002 197355..197447 -
1690962574.8504088-CDS-F-serratus_M_contig1002:197354..1974471690962574.8504088-CDS-F-serratus_M_contig1002:197354..197447Fucus serratus maleCDSF-serratus_M_contig1002 197355..197447 -
1622928794.0233033-CDS-F-serratus_M_contig1002:198473..1991041622928794.0233033-CDS-F-serratus_M_contig1002:198473..199104Fucus serratus maleCDSF-serratus_M_contig1002 198474..199104 -
1690962574.8649476-CDS-F-serratus_M_contig1002:198473..1991041690962574.8649476-CDS-F-serratus_M_contig1002:198473..199104Fucus serratus maleCDSF-serratus_M_contig1002 198474..199104 -
1622928794.0419307-CDS-F-serratus_M_contig1002:199146..1991951622928794.0419307-CDS-F-serratus_M_contig1002:199146..199195Fucus serratus maleCDSF-serratus_M_contig1002 199147..199195 -
1690962574.8814557-CDS-F-serratus_M_contig1002:199146..1991951690962574.8814557-CDS-F-serratus_M_contig1002:199146..199195Fucus serratus maleCDSF-serratus_M_contig1002 199147..199195 -
1622928794.061359-CDS-F-serratus_M_contig1002:200898..2011031622928794.061359-CDS-F-serratus_M_contig1002:200898..201103Fucus serratus maleCDSF-serratus_M_contig1002 200899..201103 -
1690962574.8908741-CDS-F-serratus_M_contig1002:200898..2011031690962574.8908741-CDS-F-serratus_M_contig1002:200898..201103Fucus serratus maleCDSF-serratus_M_contig1002 200899..201103 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1002.135.1

>prot_F-serratus_M_contig1002.135.1 ID=prot_F-serratus_M_contig1002.135.1|Name=mRNA_F-serratus_M_contig1002.135.1|organism=Fucus serratus male|type=polypeptide|length=573bp
SFSVEHIVTAFLVEPTRVMMRVRALSILCQDEANNDGRGRVVELDVKVGS
VEFSVAQLRAALKNYFHPDRRAIFSRRGVWRGPLHAVLEVVVLPRMDDGS
LALALARAQLSVPRLRNGATFFSRSSPGSTPAPALAAELAPAKVAAGPGA
ESEHSEGGKNGDLVANATATASSASKPAMDGENDKENCKGKKHRSTGPKE
ETWGLKIDVVEILAKSGPPRGPRERRRLSKALLRAGDADRLLLCLGRLEG
EAPRSPPGGRADAFDDPAAVAERDFRRREKEKSCQDARLGRDVAKEDVTQ
EVPLWTPPFPPEEFDDYDEGFVSEGQEFGMNQSLVGASSHSKGRRRACDG
RDGKRHAPGQQESAELLEALRRLLEALGDVALDEDPTAEATAVEDDDGRN
GGDDGESRGACEEGEDSRQRRSSAEMGASTAASGVHRGDTDERLDWEKTA
CCDCDGDGDRADDDLAEAAAALESSCLRSVCRQYMFGVDWRFISAHGHFY
LALLKLLIGILRPIVVGPESALGHRQGWALNDTKKGEEAKKLLANFLLAP
SADCRGLVELLESLCIGLDDLVA
back to top

mRNA from alignment at F-serratus_M_contig1002:196156..201103-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1002.135.1 ID=mRNA_F-serratus_M_contig1002.135.1|Name=mRNA_F-serratus_M_contig1002.135.1|organism=Fucus serratus male|type=mRNA|length=4948bp|location=Sequence derived from alignment at F-serratus_M_contig1002:196156..201103- (Fucus serratus male)
TCATTCTCTGTTGAGCACATCGTCACGGCTTTTCTGGTGGAACCCACTCG
CGTGATGATGAGGGTCCGTGCGTTGAGTATCCTCTGCCAGGATGAGGCTA
ATAATGATGGCAGAGGAAGGGTCGTTGAGCTAGACGTAAAGGTCGGCTCG
GTTGAGTTCTCTGTGGCTCAACTGCGTGCGGCGTTGAAGAACTACTTCCA
TCCAGGTGACGAAATTATTTTGTATTAAAAAATGTAAAAAACCCCTCCAA
ACCCCCCTGAGGAATGTATTCTGTAAATAAATGAAATGGATTCTGTAGAC
GAGCACCTCTATCGGGCACAGGGGACGCTTGCTATTCACACCATGAAGAA
CGATCTTGAGGTCCTTCTCGGTTCCTGGATGCAACAATTATACTAGTTAA
TAGGTACGCAAACTGCATCCACCTCGTGTACTTCTTGCTTCGGGTGAAAG
CTTGATCTAGCGTCGCTCCCACAGTAACGAGCTGCTTAAAGAGGCCCAGG
GCGGGCGTCGACACACGAAGAGTCCATCAATTGAATTGCCGTCTTGTCAA
AAAGATTCCACAGATTTGCATATTTTTCCATCGGAACAAACAAATGTTAC
TGGGAGAGGCAGCCCTACAGACATTGCTGGGAGTAGACTAACTATACAAC
CAGGCAAGGGCTTAAAATAGGCATGTATTTTGAAGACGACGAGCTTGGAG
GGTTATTTGAAGAGCGGGACGATTGCCATGGTGACGAACGCGCACTTCGT
AGTACAAGTAGTACTTCTTTACTCTTGCGAGTGAATACACAACAAAAATA
ATACGGTATAACTTTACGCTGCGCTCAGCGACACGGCTAACCACAACAAC
AGTTAACCGTGTTACTATGCATGGGTCGAATTCCTAAGGCTAACTCATCG
AATGCGCGGGCTTGCCCACAGGCCACGACTGAAATTTTCTGCATGTGCGG
CTGCTGTGATGCTGCAGCAGCAAACTATCGTTGACTCACCAATCAAATCA
AACGGTACTTCTGCAGATCAAATTCCATTATAGCTGGAAAGTCTGGCCGG
ACCACCGGACCAGGAATTCCGAGCCCAATCTTCGCTATTATATGACTACA
GCTGGTGTATAGACTAATGCTTTGCAGATTGTAGCTTTTCTACTTGGTAT
TAAATAAAATGAAATAATCCGTTCACCATGAGGATTTTTCTTAAAATACT
GCGTACTCCCGAGTTTTTTAAGGATTTTGGTTCTTCTCTGTTTTCGATAG
AAAAAATATGAACCTGGAACGCATCCAAACCTAACCTTTCGAGCATGCAC
ACCTTCCGGAGCAACTGATCGATGATTCCGATCCGTCACCGCTCCTCGAG
AACCAATGTTTTCGGGCGTGACCCAGTTACCGTTTCTCGTACGCAACTGG
TGTGCTATCCCTGTTCTGTACTACCAGGTATGTATGTAGTCTTAGCGAGT
CGTTACGCGATATTCTGGGAAACTTGAAACTTGCAAATGCACTCCTGAGT
TCTGCTGAAATTTCGTGTGGGTACCTGACAAATTTTCTCGGTCCATCCAC
TACAGCAGTGACAAATGTTCGAATTCACGATACGCACTTCCATCTTTTCG
AACGCTGGGCCACCAGGTTTCTTTTTTGAACACTCGGGGTGCATTGTTAA
ACCGCAGCGGTTTATGCATTGTTAAACCGCAGCGGTTTATTGCGTTAGCG
CTGCCCCGGGTCAGCAGAAAGCTTCGTATGCCGACAGAGAGGGAGATGCT
CCGTGTCCCCACGACACATCTGTGTCGCGTAGGTACACTCACGAATAACA
ACTACTTCGTGCTGTACAGCGCACCAAAACCTCGCTCTCTTTTTTCGACG
CCCGCGCTGACGTCAAATTTCTTTCCTTTCCCCGGGCGCCCTCTGGAATG
GACGGAAGATCGGCGCGCGATCTTTTCGCGCAGGGGCGTGTGGCGTGGCC
CCCTGCATGACCTTCCCAAGTCGACGTTGCTGCCGCTGCCGCCGCCGAAC
GCGGTGCTCGAGGTGGTGGTATTACCTAGGATGGACGACGGCTCCCTCGC
ACTGGCGCTAGCGAGAGCACAGCTTAGCGTGCCGCGTCTACGCAATGGCG
CCACCTTCTTCTCAAGGTCATCACCGGGGAGTACACCCGCGCCTGCGCTG
GCGGCCGAGCTTGCTCCCGCAAAGGTAGCTGCTGGCCCCGGGGCCGAGAG
TGAGCACAGCGAAGGAGGGAAAAACGGGGATCTTGTTGCCAACGCCACCG
CTACCGCCTCCTCTGCGTCGAAACCCGCGATGGACGGGGAAAATGATAAA
GAAAACTGTAAAGGGAAGAAGCACCGCTCGACGGGGCCAAAAGAAGAAAC
GTGGGGGCTGAAGATCGACGTGGTCGAGATTCTCGCGAAAAGCGGCCCCC
CCCGCGGCCCCCGCGAGCGACGGCGTCTATCGAAGGCGTTGCTGCGCGCC
GGCGATGCTGACCGCCTGCTGCTATGCCTCGGACGCCTGGAGGGTGAGGC
GCCGCGGAGCCCTCCGGGGGGACGCGCGGACGCGTTCGACGATCCCGCCG
CCGTCGCAGAGCGGGATTTCAGGCGGAGGGAGAAGGAAAAGAGCTGCCAA
GACGCTCGCCTTGGGCGGGACGTTGCCAAGGTGCGAAACGAGGGACTTTA
TTTTGTTTTATGTTTTTCGTAATTTCGCAATCGTCCCGTCTGGCTTTCAT
AATTTTTACTGCGTTGTGGTAGTCAGAGAGAGCATAGGGTCGCGTCCCTT
TTTCACGTGGGGCTGGCTCCCCACAAGAGTTGAACCTACGCGACGCCTCG
AGCTTTTCCCCCACGACGCCGTGGGGCGCGGTTGCGACAGAAGCTATCCT
CGCCCCCTCCCCTCCCCGATGATAGGTTATTATACCGTACCATCGGTCAC
TATACCGTACCATCGGTCATTATACCGTACCATTGTTGTTGGTGTTTTGC
TTGGCGCTCGAGTAGCTCATGGAATACAGAGTACAGGAGTAGAACGGCTT
CCCTTGACGCCTCTCAAAACTACCGCGTTTGATTCGCCGATGGTCCGGCC
CTTTAATAAAACGTAGCTAAATACAACGGCTTTCCCCTCTCTTACATCCA
CTCGCACTGTTTGATCGGTGTTTGAACCTGATCGGTGCTATTGTTGGGGC
ATGCCCCTTGTTTTCCCTCGAATGACTCCTCAAGTCTCAAACCAGCCAGC
CGTGCATGCGGTGCCCCCACAGTATAGCCATGCTCCTGGTTTAACAGCGC
TATGAGCGAACTCGTTCGAGTCTACCGCGTCGCCTGACGAAGGAGCGCCG
CCAGTGGTGCTCGAACGCGTGGATACAGCGCAGTGCCGTGAGCCTCATTC
CTTTTCGGAAAACACTTCCATCAAGACACCGAAAGCTAGGCGAGGCTTGC
CGCGGGGGCAGGATCCCGACCCCTACAAACACGGCAAAAGCGTCGCACAC
CTTCAACTCCCGCCTCTCGAGCAGCCCCCCCCTCAATTGTCAAGCTCCAG
CTCCAGTTCTCCTGGCCCGATAACTTAGAAGAGCCCCGCTGACTGCTCGA
GCAGGGGCGCGTGAGACGTGTCGAATCTCTCGTGCTCCGTCGTGATGATG
GTGCCTTCTGTCCCTCTGCCTCTTGATGTTACATTTTCACTTTTTTACAA
ACGCAGGAAGATGTTACCCAGGAGGTGCCTTTATGGACCCCCCCGTTTCC
ACCCGAGGAGTTCGATGACTATGACGAAGGCTTTGTGTCAGAGGGTCAAG
TGAGTGCGGCGCTTCTGCAGCAGCAGCTGCTGCAGCTGTAGTCAGAACAA
ATACAGAAGGTTTAGGCGCGTTCGTATTTTTCTTTAAACCCTCTTCATCG
TAGAATCGCGTGAGAAGCCTGAAATTTCACTGCTGTGCCCAGTACCGAAA
GAGACATGCACACCCTAGTGGAGTTCAAAATCAGGTTAGTGCGCACAGAT
CGATTTGGGGGCGAAAAAGATCGCACCTTTGTCCAACAGTCCGCCGATCT
CATACTAGCAAAAAATATCATGTGCAAATGTTTTTGTGCGTGGTCTCTAG
TTCCCATGTCGTCGGCCTTTTCGCGTCGCGCCCACGCTCGAACCCGTCCT
CCTTCTCTCTCCCGCCCTTTTCTCCCTGCCAATAATACCCACCCACCTCC
CCCCCCCCCAAATAAAACTTTGGGTGCATCGATGGTTGCCCGTGGGCACT
CAAAGGAGTTTGGGATGAACCAAAGTCTTGTGGGCGCCTCTTCCCACTCC
AAGGGACGTCGCCGTGCTTGCGATGGCCGGGACGGCAAGAGGCATGCGCC
TGGGCAGCAGGAATCTGCGGAACTATTGGAGGCGTTACGGCGTTTGTTGG
AGGCTCTCGGCGACGTTGCCTTGGACGAGGATCCCACGGCAGAGGCAACG
GCGGTGGAGGACGACGATGGCAGAAACGGTGGCGACGATGGCGAATCAAG
AGGCGCGTGTGAGGAGGGAGAAGACTCGCGGCAGAGACGCTCGAGCGCTG
AGATGGGCGCGAGCACCGCTGCCTCGGGGGTCCACCGTGGCGATACGGAC
GAGCGCTTGGATTGGGAGAAAACAGCATGCTGTGACTGCGACGGTGACGG
CGACCGGGCAGATGACGATCTTGCGGAAGCAGCGGCGGCGCTGGAAAGCT
CCTGTCTTCGGAGCGTGTGCCGCCAGTACATGTTCGGCGTGGACTGGAGG
TTCATCTCCGCGCATGGTCACTTCTACCTCGCCCTCCTAAAGCTCCTGAT
AGGTATTCTTCGGCCGATCGTCGTCGGTCCGGAGAGCGCGCTGGGGCACC
GACAAGGGTGGGCGCTGAACGACACGAAAAAAGGCGAGGAGGCAAAGAAG
CTGCTTGCAAACTTTCTCTTGGCGCCTTCCGCGGACTGTCGCGGCCTCGT
GGAGTTACTCGAGAGCCTCTGCATTGGACTGGACGACCTCGTAGCCGT
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1002:196156..201103-

>mRNA_F-serratus_M_contig1002.135.1 ID=mRNA_F-serratus_M_contig1002.135.1|Name=mRNA_F-serratus_M_contig1002.135.1|organism=Fucus serratus male|type=CDS|length=3438bp|location=Sequence derived from alignment at F-serratus_M_contig1002:196156..201103- (Fucus serratus male)
TCATTCTCTGTTGAGCACATCGTCACGGCTTTTCTGGTGGAACCCACTCG
CGTGATGATGAGGGTCCGTGCGTTGAGTATCCTCTGCCAGGATGAGGCTA
ATAATGATGGCAGAGGAAGGGTCGTTGAGCTAGACGTAAAGGTCGGCTCG
GTTGAGTTCTCTGTGGCTCAACTGCGTGCGGCGTTGAAGAACTACTTCCA
TCCAGTCATTCTCTGTTGAGCACATCGTCACGGCTTTTCTGGTGGAACCC
ACTCGCGTGATGATGAGGGTCCGTGCGTTGAGTATCCTCTGCCAGGATGA
GGCTAATAATGATGGCAGAGGAAGGGTCGTTGAGCTAGACGTAAAGGTCG
GCTCGGTTGAGTTCTCTGTGGCTCAACTGCGTGCGGCGTTGAAGAACTAC
TTCCATCCAGATCGGCGCGCGATCTTTTCGCGCAGGGGCGTGTGGCGTGG
CCCCCTGCAATCGGCGCGCGATCTTTTCGCGCAGGGGCGTGTGGCGTGGC
CCCCTGCACGCGGTGCTCGAGGTGGTGGTATTACCTAGGATGGACGACGG
CTCCCTCGCACTGGCGCTAGCGAGAGCACAGCTTAGCGTGCCGCGTCTAC
GCAATGGCGCCACCTTCTTCTCAAGGTCATCACCGGGGAGTACACCCGCG
CCTGCGCTGGCGGCCGAGCTTGCTCCCGCAAAGGTAGCTGCTGGCCCCGG
GGCCGAGAGTGAGCACAGCGAAGGAGGGAAAAACGGGGATCTTGTTGCCA
ACGCCACCGCTACCGCCTCCTCTGCGTCGAAACCCGCGATGGACGGGGAA
AATGATAAAGAAAACTGTAAAGGGAAGAAGCACCGCTCGACGGGGCCAAA
AGAAGAAACGTGGGGGCTGAAGATCGACGTGGTCGAGATTCTCGCGAAAA
GCGGCCCCCCCCGCGGCCCCCGCGAGCGACGGCGTCTATCGAAGGCGTTG
CTGCGCGCCGGCGATGCTGACCGCCTGCTGCTATGCCTCGGACGCCTGGA
GGGTGAGGCGCCGCGGAGCCCTCCGGGGGGACGCGCGGACGCGTTCGACG
ATCCCGCCGCCGTCGCAGAGCGGGATTTCAGGCGGAGGGAGAAGGAAAAG
AGCTGCCAAGACGCTCGCCTTGGGCGGGACGTTGCCAAGCGCGGTGCTCG
AGGTGGTGGTATTACCTAGGATGGACGACGGCTCCCTCGCACTGGCGCTA
GCGAGAGCACAGCTTAGCGTGCCGCGTCTACGCAATGGCGCCACCTTCTT
CTCAAGGTCATCACCGGGGAGTACACCCGCGCCTGCGCTGGCGGCCGAGC
TTGCTCCCGCAAAGGTAGCTGCTGGCCCCGGGGCCGAGAGTGAGCACAGC
GAAGGAGGGAAAAACGGGGATCTTGTTGCCAACGCCACCGCTACCGCCTC
CTCTGCGTCGAAACCCGCGATGGACGGGGAAAATGATAAAGAAAACTGTA
AAGGGAAGAAGCACCGCTCGACGGGGCCAAAAGAAGAAACGTGGGGGCTG
AAGATCGACGTGGTCGAGATTCTCGCGAAAAGCGGCCCCCCCCGCGGCCC
CCGCGAGCGACGGCGTCTATCGAAGGCGTTGCTGCGCGCCGGCGATGCTG
ACCGCCTGCTGCTATGCCTCGGACGCCTGGAGGGTGAGGCGCCGCGGAGC
CCTCCGGGGGGACGCGCGGACGCGTTCGACGATCCCGCCGCCGTCGCAGA
GCGGGATTTCAGGCGGAGGGAGAAGGAAAAGAGCTGCCAAGACGCTCGCC
TTGGGCGGGACGTTGCCAAGGAAGATGTTACCCAGGAGGTGCCTTTATGG
ACCCCCCCGTTTCCACCCGAGGAGTTCGATGACTATGACGAAGGCTTTGT
GTCAGAGGGTCAAGAAGATGTTACCCAGGAGGTGCCTTTATGGACCCCCC
CGTTTCCACCCGAGGAGTTCGATGACTATGACGAAGGCTTTGTGTCAGAG
GGTCAAGAGTTTGGGATGAACCAAAGTCTTGTGGGCGCCTCTTCCCACTC
CAAGGGACGTCGCCGTGCTTGCGATGGCCGGGACGGCAAGAGGCATGCGC
CTGGGCAGCAGGAATCTGCGGAACTATTGGAGGCGTTACGGCGTTTGTTG
GAGGCTCTCGGCGACGTTGCCTTGGACGAGGATCCCACGGCAGAGGCAAC
GGCGGTGGAGGACGACGATGGCAGAAACGGTGGCGACGATGGCGAATCAA
GAGGCGCGTGTGAGGAGGGAGAAGACTCGCGGCAGAGACGCTCGAGCGCT
GAGATGGGCGCGAGCACCGCTGCCTCGGGGGTCCACCGTGGCGATACGGA
CGAGCGCTTGGATTGGGAGAAAACAGCATGCTGTGACTGCGACGGTGACG
GCGACCGGGCAGATGACGATCTTGCGGAAGCAGCGGCGGCGCTGGAAAGC
TCCTGTCTTCGGAGCGTGTGCCGCCAGTACATGTTCGGCGTGGACTGGAG
GTTCATCTCCGCGCATGGTCACTTCTACCTCGCCCTCCTAAAGCTCCTGA
TAGGTATTCTTCGGCCGATCGTCGTCGGTCCGGAGAGCGCGCTGGGGCAC
CGACAAGGGTGGGCGCTGAACGACACGAAAAAAGGCGAGGAGGCAAAGAA
GCTGCTTGCAAACTTTCTCTTGGCGCCTTCCGCGGACTGTCGCGGCCTCG
TGGAGTTACTCGAGAGCCTCTGCATTGGACTGGACGACCTCGTAGCCGAG
TTTGGGATGAACCAAAGTCTTGTGGGCGCCTCTTCCCACTCCAAGGGACG
TCGCCGTGCTTGCGATGGCCGGGACGGCAAGAGGCATGCGCCTGGGCAGC
AGGAATCTGCGGAACTATTGGAGGCGTTACGGCGTTTGTTGGAGGCTCTC
GGCGACGTTGCCTTGGACGAGGATCCCACGGCAGAGGCAACGGCGGTGGA
GGACGACGATGGCAGAAACGGTGGCGACGATGGCGAATCAAGAGGCGCGT
GTGAGGAGGGAGAAGACTCGCGGCAGAGACGCTCGAGCGCTGAGATGGGC
GCGAGCACCGCTGCCTCGGGGGTCCACCGTGGCGATACGGACGAGCGCTT
GGATTGGGAGAAAACAGCATGCTGTGACTGCGACGGTGACGGCGACCGGG
CAGATGACGATCTTGCGGAAGCAGCGGCGGCGCTGGAAAGCTCCTGTCTT
CGGAGCGTGTGCCGCCAGTACATGTTCGGCGTGGACTGGAGGTTCATCTC
CGCGCATGGTCACTTCTACCTCGCCCTCCTAAAGCTCCTGATAGGTATTC
TTCGGCCGATCGTCGTCGGTCCGGAGAGCGCGCTGGGGCACCGACAAGGG
TGGGCGCTGAACGACACGAAAAAAGGCGAGGAGGCAAAGAAGCTGCTTGC
AAACTTTCTCTTGGCGCCTTCCGCGGACTGTCGCGGCCTCGTGGAGTTAC
TCGAGAGCCTCTGCATTGGACTGGACGACCTCGTAGCC
back to top