mRNA_F-serratus_M_contig1001.128.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1001.128.1
Unique NamemRNA_F-serratus_M_contig1001.128.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1001.128.1 vs. uniprot
Match: A0A3B0CP29_9BACL (NADAR family protein n=1 Tax=Paenibacillus ginsengarvi TaxID=400777 RepID=A0A3B0CP29_9BACL)

HSP 1 Score: 108 bits (270), Expect = 2.670e-27
Identity = 50/120 (41.67%), Postives = 74/120 (61.67%), Query Frame = 1 
Query:    1 PFAVDLVEYDCAEQFMMASNARLFGGDLALSAILATDDPREQKSLDRHVRHFDHDFWQQKCEHVVLRGNLANFSHNEKMLLAFVHTGQRRLPIASPHDKLWGIGLGACDPESTNASTIKW 360
            PF V+ ++Y CAEQ+MMA  AR+FG +  L+AI+    P+E K   R V++FD D W+  C  +V RGN   FS + ++      T +R L  ASP D++WGIG+G  +P++ N   +KW
Sbjct:   46 PFVVEGIQYSCAEQYMMAEKARMFGDEEMLAAIMQARHPKEMKEYGRAVKNFDKDAWENGCYGIVKRGNRTKFSQHAELAAYLKKTNKRILVEASPRDRIWGIGMGQSNPDAENP--MKW 163
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BLAST of mRNA_F-serratus_M_contig1001.128.1 vs. uniprot
Match: A0A3A9FJW8_9BACT (NADAR family protein n=1 Tax=bacterium 1XD8-76 TaxID=2320115 RepID=A0A3A9FJW8_9BACT)

HSP 1 Score: 108 bits (269), Expect = 3.410e-27
Identity = 52/120 (43.33%), Postives = 71/120 (59.17%), Query Frame = 1 
Query:    1 PFAVDLVEYDCAEQFMMASNARLFGGDLALSAILATDDPREQKSLDRHVRHFDHDFWQQKCEHVVLRGNLANFSHNEKMLLAFVHTGQRRLPIASPHDKLWGIGLGACDPESTNASTIKW 360
            PF VD V+Y CAEQFMMA  AR+FG    L+ I+    P+E K+  R V +FD + W   C  +V +GN A FS N  +L   + T  R L  ASP D++WGIG+G  +P++     +KW
Sbjct:   48 PFQVDGVKYSCAEQFMMAEKARMFGDPEMLAKIMEASHPKEMKAYGRAVANFDKETWDNSCYEIVKKGNYAKFSQNPDLLNFLLSTKNRILVEASPRDRIWGIGMGKANPDAL--CPLKW 165
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BLAST of mRNA_F-serratus_M_contig1001.128.1 vs. uniprot
Match: A0A369B830_9BACL (NADAR domain-containing protein n=1 Tax=Fontibacillus phaseoli TaxID=1416533 RepID=A0A369B830_9BACL)

HSP 1 Score: 108 bits (270), Expect = 4.940e-27
Identity = 54/120 (45.00%), Postives = 72/120 (60.00%), Query Frame = 1 
Query:    1 PFAVDLVEYDCAEQFMMASNARLFGGDLALSAILATDDPREQKSLDRHVRHFDHDFWQQKCEHVVLRGNLANFSHNEKMLLAFVHTGQRRLPIASPHDKLWGIGLGACDPESTNASTIKW 360
            PF V+  EY CAEQFMMA  ARLFG D  L +IL    P+E K+  R V++FD + W ++C  +V R +LA FS N  +      T  R L  ASP D++WGIG+G  +P+    ST+ W
Sbjct:   46 PFKVEGTEYSCAEQFMMAEKARLFGDDEMLESILKAKHPKEMKAYGRAVQNFDKEIWDKECYGIVKRASLAKFSQNPMLGEYLKSTKNRILVEASPRDRIWGIGMGQSNPDE---STLSW 162
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BLAST of mRNA_F-serratus_M_contig1001.128.1 vs. uniprot
Match: A0A0H4WPI7_9DELT (GTP cyclohydrolase II n=1 Tax=Myxococcus hansupus TaxID=1297742 RepID=A0A0H4WPI7_9DELT)

HSP 1 Score: 107 bits (266), Expect = 5.010e-27
Identity = 54/116 (46.55%), Postives = 69/116 (59.48%), Query Frame = 1 
Query:    4 FAVDLVEYDCAEQFMMASNARLFGGDLALSAILATDDPREQKSLDRHVRHFDHDFWQQKCEHVVLRGNLANFSHNEKMLLAFVHTGQRRLPIASPHDKLWGIGLGACDPESTNAST 351
            F VD   Y CAEQ+MMA  ARLFG    L+ ILA++ P+  K+L R VRHFD   W+Q  E +V  GN A F+ N  +L A + T    L  ASP D++WG+GL   DP   N +T
Sbjct:   27 FEVDGARYVCAEQYMMAGKARLFGDTEVLAKILASESPKTHKALGRKVRHFDAAKWEQAREQIVYEGNRAKFTQNPALLEALLATAGTELVEASPMDRIWGVGLSEEDPRIQNPAT 142
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BLAST of mRNA_F-serratus_M_contig1001.128.1 vs. uniprot
Match: D7FYJ3_ECTSI (NADAR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYJ3_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 5.700e-27
Identity = 53/116 (45.69%), Postives = 72/116 (62.07%), Query Frame = 1 
Query:    4 FAVDLVEYDCAEQFMMASNARLFGGDLALSAILATDDPREQKSLDRHVRHFDHDFWQQKCEHVVLRGNLANFSHNEKMLLAFVHTGQRRLPIASPHDKLWGIGLGACDPESTNAST 351
            F VD V+Y CAEQ+MMA  A+LFG + +   I+AT  PRE K L R V  +D + W Q    +V RGN A F+ NE M    + TG++ L  ASP+D++WGIGL A +P +   S+
Sbjct:   78 FVVDNVQYSCAEQYMMAEKAKLFGDNSSWQKIMATPSPREHKDLGRGVSGYDQNVWDQHKMRIVARGNYAKFTQNEMMGQRLLDTGEKLLAEASPYDRVWGIGLRADNPAARTPSS 193
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1001.128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3B0CP29_9BACL2.670e-2741.67NADAR family protein n=1 Tax=Paenibacillus ginseng... [more]
A0A3A9FJW8_9BACT3.410e-2743.33NADAR family protein n=1 Tax=bacterium 1XD8-76 Tax... [more]
A0A369B830_9BACL4.940e-2745.00NADAR domain-containing protein n=1 Tax=Fontibacil... [more]
A0A0H4WPI7_9DELT5.010e-2746.55GTP cyclohydrolase II n=1 Tax=Myxococcus hansupus ... [more]
D7FYJ3_ECTSI5.700e-2745.69NADAR domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1001contigF-serratus_M_contig1001:322330..322689 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score115.2
Seed ortholog evalue2.2e-23
Seed eggNOG ortholog1280390.CBQR020000102_gene2681
Preferred nameybiA
KEGG koko:K09935
Hectar predicted targeting categoryother localisation
EggNOG free text desc.peptidyl-tyrosine sulfation
EggNOG OGs1UY8T@1239,26QSC@186822,4HH0H@91061,COG3236@2,COG5113@1
COG Functional cat.O
Best tax levelPaenibacillaceae
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size360
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928792.8717418-CDS-F-serratus_M_contig1001:322329..3226891622928792.8717418-CDS-F-serratus_M_contig1001:322329..322689Fucus serratus maleCDSF-serratus_M_contig1001 322330..322689 -
1690962574.2939236-CDS-F-serratus_M_contig1001:322329..3226891690962574.2939236-CDS-F-serratus_M_contig1001:322329..322689Fucus serratus maleCDSF-serratus_M_contig1001 322330..322689 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1001.128.1prot_F-serratus_M_contig1001.128.1Fucus serratus malepolypeptideF-serratus_M_contig1001 322330..322689 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1001.128.1

>prot_F-serratus_M_contig1001.128.1 ID=prot_F-serratus_M_contig1001.128.1|Name=mRNA_F-serratus_M_contig1001.128.1|organism=Fucus serratus male|type=polypeptide|length=120bp
PFAVDLVEYDCAEQFMMASNARLFGGDLALSAILATDDPREQKSLDRHVR
HFDHDFWQQKCEHVVLRGNLANFSHNEKMLLAFVHTGQRRLPIASPHDKL
WGIGLGACDPESTNASTIKW
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mRNA from alignment at F-serratus_M_contig1001:322330..322689-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1001.128.1 ID=mRNA_F-serratus_M_contig1001.128.1|Name=mRNA_F-serratus_M_contig1001.128.1|organism=Fucus serratus male|type=mRNA|length=360bp|location=Sequence derived from alignment at F-serratus_M_contig1001:322330..322689- (Fucus serratus male)
CCATTCGCGGTGGATCTAGTCGAATACGATTGTGCAGAACAGTTCATGAT
GGCCTCGAATGCTCGCCTATTTGGCGGCGACTTGGCGCTCTCGGCAATAC
TTGCTACTGACGATCCTCGAGAGCAAAAATCTCTCGATCGTCATGTACGC
CACTTCGATCACGATTTCTGGCAGCAAAAATGCGAACATGTCGTCCTCCG
AGGCAACCTGGCAAATTTCTCCCATAACGAGAAAATGCTCCTGGCCTTCG
TGCACACGGGCCAACGCCGCCTCCCCATAGCGAGCCCGCATGACAAATTG
TGGGGCATCGGCCTGGGCGCGTGCGACCCCGAGAGCACAAACGCCTCGAC
CATTAAGTGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1001:322330..322689-

>mRNA_F-serratus_M_contig1001.128.1 ID=mRNA_F-serratus_M_contig1001.128.1|Name=mRNA_F-serratus_M_contig1001.128.1|organism=Fucus serratus male|type=CDS|length=720bp|location=Sequence derived from alignment at F-serratus_M_contig1001:322330..322689- (Fucus serratus male)
CCATTCGCGGTGGATCTAGTCGAATACGATTGTGCAGAACAGTTCATGAT
GGCCTCGAATGCTCGCCTATTTGGCGGCGACTTGGCGCTCTCGGCAATAC
TTGCTACTGACGATCCTCGAGAGCAAAAATCTCTCGATCGTCATGTACGC
CACTTCGATCACGATTTCTGGCAGCAAAAATGCGAACATGTCGTCCTCCG
AGGCAACCTGGCAAATTTCTCCCATAACGAGAAAATGCTCCTGGCCTTCG
TGCACACGGGCCAACGCCGCCTCCCCATAGCGAGCCCGCATGACAAATTG
TGGGGCATCGGCCTGGGCGCGTGCGACCCCGAGAGCACAAACGCCTCGAC
CATTAAGTGGCCATTCGCGGTGGATCTAGTCGAATACGATTGTGCAGAAC
AGTTCATGATGGCCTCGAATGCTCGCCTATTTGGCGGCGACTTGGCGCTC
TCGGCAATACTTGCTACTGACGATCCTCGAGAGCAAAAATCTCTCGATCG
TCATGTACGCCACTTCGATCACGATTTCTGGCAGCAAAAATGCGAACATG
TCGTCCTCCGAGGCAACCTGGCAAATTTCTCCCATAACGAGAAAATGCTC
CTGGCCTTCGTGCACACGGGCCAACGCCGCCTCCCCATAGCGAGCCCGCA
TGACAAATTGTGGGGCATCGGCCTGGGCGCGTGCGACCCCGAGAGCACAA
ACGCCTCGACCATTAAGTGG
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