mRNA_F-serratus_M_contig1001.128.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1001.128.1
Unique NamemRNA_F-serratus_M_contig1001.128.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1001.128.1 vs. uniprot
Match: A0A1I0BVC9_9FIRM (DUF1768 domain-containing protein n=5 Tax=Enterocloster TaxID=2719313 RepID=A0A1I0BVC9_9FIRM)

HSP 1 Score: 110 bits (276), Expect = 2.940e-28
Identity = 57/119 (47.90%), Postives = 72/119 (60.50%), Query Frame = 1
Query:    4 FAVDLVEYDCAEQFMMASNARLFGGDLALSAILATDDPREQKSLDRHVRHFDHDFWQQKCEHVVLRGNLANFSHNEKMLLAFVHTGQRRLPIASPHDKLWGIGLGACDPESTNASTIKW 360
            FAVD VEY CAEQ+MMA  AR+FG    L+ IL    P+E K+  R VR+FD D W   C  +V  GNLA FS N ++      TG R L  ASP D++WGIG+G  +P++  A   KW
Sbjct:   47 FAVDGVEYSCAEQYMMAEKARMFGDREMLARILEAGHPKEMKAYGRAVRNFDPDRWDAACYDIVKAGNLAKFSQNPELWDYLKSTGTRILVEASPRDRIWGIGMGKSNPDA--ADPAKW 163          
BLAST of mRNA_F-serratus_M_contig1001.128.1 vs. uniprot
Match: A0A0K1PK87_9DELT (GTP cyclohydrolase II n=1 Tax=Labilithrix luteola TaxID=1391654 RepID=A0A0K1PK87_9DELT)

HSP 1 Score: 110 bits (275), Expect = 4.370e-28
Identity = 58/116 (50.00%), Postives = 70/116 (60.34%), Query Frame = 1
Query:    1 PFAVDLVEYDCAEQFMMASNARLFGGDLALSAILATDDPREQKSLDRHVRHFDHDFWQQKCEHVVLRGNLANFSHNEKMLLAFVHTGQRRLPIASPHDKLWGIGLGACDPESTNAS 348
            PF +D V Y  AE FMMA  ARLFG D ALS ILA   P E K+L R VR++D D W       V+RGNLA F  +E +      TG+R L  ASPHD++WGIGLG  +P +   S
Sbjct:   45 PFVIDGVRYATAEHFMMAEKARLFGDDDALSNILAAKSPPEAKALGRTVRNYDDDAWSAARVDAVVRGNLAKFGQDEALGAFLRSTGRRILVEASPHDRIWGIGLGGSNPAAQQPS 160          
BLAST of mRNA_F-serratus_M_contig1001.128.1 vs. uniprot
Match: A0A7U9MRX1_9FIRM (N-glycosidase YbiA n=1 Tax=Lachnospiraceae bacterium TaxID=1898203 RepID=A0A7U9MRX1_9FIRM)

HSP 1 Score: 109 bits (273), Expect = 7.490e-28
Identity = 55/119 (46.22%), Postives = 75/119 (63.03%), Query Frame = 1
Query:    4 FAVDLVEYDCAEQFMMASNARLFGGDLALSAILATDDPREQKSLDRHVRHFDHDFWQQKCEHVVLRGNLANFSHNEKMLLAFVHTGQRRLPIASPHDKLWGIGLGACDPESTNASTIKW 360
            F VD VEY CAEQFMMA  ARLFG    L+ I+ + +P+E K+  R VR F+ D W+  C  +V RGN+A FS N ++      T +R L  ASP D++WGIG+G  +P++ N   +KW
Sbjct:   47 FEVDGVEYCCAEQFMMAEKARLFGDGEMLTQIMESVNPKEMKAYGRKVRGFEKDVWEDACYGIVKRGNVAKFSQNPELWEYLKRTQKRILVEASPMDRIWGIGMGKTNPDAQNP--LKW 163          
BLAST of mRNA_F-serratus_M_contig1001.128.1 vs. uniprot
Match: UPI001CCB45E4 (NADAR family protein n=1 Tax=Nannocystis pusilla TaxID=889268 RepID=UPI001CCB45E4)

HSP 1 Score: 109 bits (272), Expect = 7.930e-28
Identity = 54/115 (46.96%), Postives = 71/115 (61.74%), Query Frame = 1
Query:    4 FAVDLVEYDCAEQFMMASNARLFGGDLALSAILATDDPREQKSLDRHVRHFDHDFWQQKCEHVVLRGNLANFSHNEKMLLAFVHTGQRRLPIASPHDKLWGIGLGACDPESTNAS 348
            F VD V Y CAEQFMMA  ARLFG +   + ILATD PR+ K+L R V  F    W+++C  +V+RGN A F  +  +  A + TG + L  ASP D++WG+GL A DP   + S
Sbjct:   35 FVVDGVTYGCAEQFMMAEKARLFGDEATRAKILATDSPRQHKALGREVAGFVQAVWERECLEIVVRGNRAKFGQDPDLRAALLATGDKLLVEASPLDRIWGVGLRADDPRIHDTS 149          
BLAST of mRNA_F-serratus_M_contig1001.128.1 vs. uniprot
Match: A0A5D0CR62_9BACL (NADAR family protein n=2 Tax=Paenibacillus TaxID=44249 RepID=A0A5D0CR62_9BACL)

HSP 1 Score: 109 bits (273), Expect = 8.310e-28
Identity = 55/120 (45.83%), Postives = 72/120 (60.00%), Query Frame = 1
Query:    1 PFAVDLVEYDCAEQFMMASNARLFGGDLALSAILATDDPREQKSLDRHVRHFDHDFWQQKCEHVVLRGNLANFSHNEKMLLAFVHTGQRRLPIASPHDKLWGIGLGACDPESTNASTIKW 360
            PF V+  +Y CAEQFMMA  ARLFG    L AIL    P+E K+  R VR+FD + W   C  +V RG+LA FS N ++      T  R L  ASP D++WGIG+G  +P++ N   +KW
Sbjct:   46 PFEVEGTKYSCAEQFMMAEKARLFGDGEMLEAILGAKHPKEMKAYGRAVRNFDKEIWDSACYGIVKRGSLAKFSQNPELGDYLKATKNRILVEASPRDRIWGIGMGQSNPDAENP--VKW 163          
BLAST of mRNA_F-serratus_M_contig1001.128.1 vs. uniprot
Match: UPI000A57A0E7 (NADAR family protein n=1 Tax=Paenibacillus stellifer TaxID=169760 RepID=UPI000A57A0E7)

HSP 1 Score: 107 bits (268), Expect = 1.330e-27
Identity = 53/120 (44.17%), Postives = 72/120 (60.00%), Query Frame = 1
Query:    1 PFAVDLVEYDCAEQFMMASNARLFGGDLALSAILATDDPREQKSLDRHVRHFDHDFWQQKCEHVVLRGNLANFSHNEKMLLAFVHTGQRRLPIASPHDKLWGIGLGACDPESTNASTIKW 360
            PF V+ +EY CAEQFMMA  ARLFG +  L+ I+    P+E K+  R VR FD D W ++C  +V R +LA F+ N  +      T  R L  ASP D++WGIG+G  +P + N   +KW
Sbjct:    3 PFTVEGIEYSCAEQFMMAEKARLFGDEEMLTLIVRAKHPKEMKAYGRAVRSFDKDVWDRECYGIVKRASLAKFAQNPLLGDYLKSTKNRILVEASPRDRIWGIGMGGSNPNAENP--VKW 120          
BLAST of mRNA_F-serratus_M_contig1001.128.1 vs. uniprot
Match: G4HDA9_9BACL (NADAR domain-containing protein n=15 Tax=Paenibacillus TaxID=44249 RepID=G4HDA9_9BACL)

HSP 1 Score: 108 bits (271), Expect = 1.390e-27
Identity = 55/120 (45.83%), Postives = 71/120 (59.17%), Query Frame = 1
Query:    1 PFAVDLVEYDCAEQFMMASNARLFGGDLALSAILATDDPREQKSLDRHVRHFDHDFWQQKCEHVVLRGNLANFSHNEKMLLAFVHTGQRRLPIASPHDKLWGIGLGACDPESTNASTIKW 360
            PF V+  EY CAEQFMMA  ARLFG    L +IL    P+E K+  R VR+FD D W Q+C  +V R +LA FS N ++      T  R L  ASP D++WGIG+   +P + N   +KW
Sbjct:   46 PFTVEGTEYSCAEQFMMAEKARLFGDHEMLESILTAKHPKEMKAYGRAVRNFDKDTWDQECYGIVKRASLAKFSQNPELGDYLKSTKNRILVEASPQDRIWGIGMSQSNPNAENP--VKW 163          
BLAST of mRNA_F-serratus_M_contig1001.128.1 vs. uniprot
Match: A0A433REG2_9BACL (NADAR family protein n=1 Tax=Cohnella sp. AR92 TaxID=648716 RepID=A0A433REG2_9BACL)

HSP 1 Score: 108 bits (271), Expect = 1.390e-27
Identity = 55/120 (45.83%), Postives = 74/120 (61.67%), Query Frame = 1
Query:    1 PFAVDLVEYDCAEQFMMASNARLFGGDLALSAILATDDPREQKSLDRHVRHFDHDFWQQKCEHVVLRGNLANFSHNEKMLLAFVHTGQRRLPIASPHDKLWGIGLGACDPESTNASTIKW 360
            PF V+   Y CAEQFMMA  ARLFG    L +IL  + P+E K+  R VR+FD+D W+++C  +V RG+LA FS N ++      TG R L  ASP D++WGIG+    P+  N +  KW
Sbjct:   46 PFEVEGTAYSCAEQFMMAEKARLFGDGEMLESILKANHPKEMKAYGRAVRNFDNDVWERECYGIVRRGSLAKFSQNSELGEFLKSTGSRILVEASPLDRIWGIGMEQSHPDIENPT--KW 163          
BLAST of mRNA_F-serratus_M_contig1001.128.1 vs. uniprot
Match: H3SFY4_9BACL (NADAR domain-containing protein n=9 Tax=Paenibacillus TaxID=44249 RepID=H3SFY4_9BACL)

HSP 1 Score: 108 bits (270), Expect = 2.120e-27
Identity = 54/119 (45.38%), Postives = 70/119 (58.82%), Query Frame = 1
Query:    4 FAVDLVEYDCAEQFMMASNARLFGGDLALSAILATDDPREQKSLDRHVRHFDHDFWQQKCEHVVLRGNLANFSHNEKMLLAFVHTGQRRLPIASPHDKLWGIGLGACDPESTNASTIKW 360
            F VD   Y CAEQ+MMA  ARLFG D   +AI+    P+E K+  R V++FD D W+  C  +V RGN A FS N  +      T  R L  ASP D++WGIG+G  +P++ N   IKW
Sbjct:   47 FTVDGERYSCAEQYMMAEKARLFGDDEMKAAIMNAKHPKEMKAYGRAVKNFDKDIWESSCYEIVKRGNHAKFSQNPALWNFLKTTKNRILVEASPRDRIWGIGMGKANPDAENP--IKW 163          
BLAST of mRNA_F-serratus_M_contig1001.128.1 vs. uniprot
Match: R5TV55_9CLOT (NADAR domain-containing protein n=13 Tax=Clostridiaceae TaxID=31979 RepID=R5TV55_9CLOT)

HSP 1 Score: 108 bits (270), Expect = 2.670e-27
Identity = 55/119 (46.22%), Postives = 71/119 (59.66%), Query Frame = 1
Query:    4 FAVDLVEYDCAEQFMMASNARLFGGDLALSAILATDDPREQKSLDRHVRHFDHDFWQQKCEHVVLRGNLANFSHNEKMLLAFVHTGQRRLPIASPHDKLWGIGLGACDPESTNASTIKW 360
            F VD  EY CAEQFMMA  AR+FG    LS IL    P+E K+  R V++FD D W   C  +V RGNLA FS N ++      T +R L  ASP D++WGIG+G  +P++     +KW
Sbjct:   50 FTVDGTEYTCAEQFMMAEKARMFGDGEMLSMILKARHPKEMKAYGRAVKNFDQDKWDGACYEIVKRGNLAKFSQNPELWDYLKSTKRRILVEASPRDRIWGIGMGKSNPDAE--CPVKW 166          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1001.128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1I0BVC9_9FIRM2.940e-2847.90DUF1768 domain-containing protein n=5 Tax=Enterocl... [more]
A0A0K1PK87_9DELT4.370e-2850.00GTP cyclohydrolase II n=1 Tax=Labilithrix luteola ... [more]
A0A7U9MRX1_9FIRM7.490e-2846.22N-glycosidase YbiA n=1 Tax=Lachnospiraceae bacteri... [more]
UPI001CCB45E47.930e-2846.96NADAR family protein n=1 Tax=Nannocystis pusilla T... [more]
A0A5D0CR62_9BACL8.310e-2845.83NADAR family protein n=2 Tax=Paenibacillus TaxID=4... [more]
UPI000A57A0E71.330e-2744.17NADAR family protein n=1 Tax=Paenibacillus stellif... [more]
G4HDA9_9BACL1.390e-2745.83NADAR domain-containing protein n=15 Tax=Paenibaci... [more]
A0A433REG2_9BACL1.390e-2745.83NADAR family protein n=1 Tax=Cohnella sp. AR92 Tax... [more]
H3SFY4_9BACL2.120e-2745.38NADAR domain-containing protein n=9 Tax=Paenibacil... [more]
R5TV55_9CLOT2.670e-2746.22NADAR domain-containing protein n=13 Tax=Clostridi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1001contigF-serratus_M_contig1001:322330..322689 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score115.2
Seed ortholog evalue2.2e-23
Seed eggNOG ortholog1280390.CBQR020000102_gene2681
Preferred nameybiA
KEGG koko:K09935
Hectar predicted targeting categoryother localisation
EggNOG free text desc.peptidyl-tyrosine sulfation
EggNOG OGs1UY8T@1239,26QSC@186822,4HH0H@91061,COG3236@2,COG5113@1
COG Functional cat.O
Best tax levelPaenibacillaceae
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size360
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928792.8717418-CDS-F-serratus_M_contig1001:322329..3226891622928792.8717418-CDS-F-serratus_M_contig1001:322329..322689Fucus serratus maleCDSF-serratus_M_contig1001 322330..322689 -
1690962574.2939236-CDS-F-serratus_M_contig1001:322329..3226891690962574.2939236-CDS-F-serratus_M_contig1001:322329..322689Fucus serratus maleCDSF-serratus_M_contig1001 322330..322689 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1001.128.1prot_F-serratus_M_contig1001.128.1Fucus serratus malepolypeptideF-serratus_M_contig1001 322330..322689 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1001.128.1

>prot_F-serratus_M_contig1001.128.1 ID=prot_F-serratus_M_contig1001.128.1|Name=mRNA_F-serratus_M_contig1001.128.1|organism=Fucus serratus male|type=polypeptide|length=120bp
PFAVDLVEYDCAEQFMMASNARLFGGDLALSAILATDDPREQKSLDRHVR
HFDHDFWQQKCEHVVLRGNLANFSHNEKMLLAFVHTGQRRLPIASPHDKL
WGIGLGACDPESTNASTIKW
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mRNA from alignment at F-serratus_M_contig1001:322330..322689-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1001.128.1 ID=mRNA_F-serratus_M_contig1001.128.1|Name=mRNA_F-serratus_M_contig1001.128.1|organism=Fucus serratus male|type=mRNA|length=360bp|location=Sequence derived from alignment at F-serratus_M_contig1001:322330..322689- (Fucus serratus male)
CCATTCGCGGTGGATCTAGTCGAATACGATTGTGCAGAACAGTTCATGAT GGCCTCGAATGCTCGCCTATTTGGCGGCGACTTGGCGCTCTCGGCAATAC TTGCTACTGACGATCCTCGAGAGCAAAAATCTCTCGATCGTCATGTACGC CACTTCGATCACGATTTCTGGCAGCAAAAATGCGAACATGTCGTCCTCCG AGGCAACCTGGCAAATTTCTCCCATAACGAGAAAATGCTCCTGGCCTTCG TGCACACGGGCCAACGCCGCCTCCCCATAGCGAGCCCGCATGACAAATTG TGGGGCATCGGCCTGGGCGCGTGCGACCCCGAGAGCACAAACGCCTCGAC CATTAAGTGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1001:322330..322689-

>mRNA_F-serratus_M_contig1001.128.1 ID=mRNA_F-serratus_M_contig1001.128.1|Name=mRNA_F-serratus_M_contig1001.128.1|organism=Fucus serratus male|type=CDS|length=720bp|location=Sequence derived from alignment at F-serratus_M_contig1001:322330..322689- (Fucus serratus male)
CCATTCGCGGTGGATCTAGTCGAATACGATTGTGCAGAACAGTTCATGAT
GGCCTCGAATGCTCGCCTATTTGGCGGCGACTTGGCGCTCTCGGCAATAC
TTGCTACTGACGATCCTCGAGAGCAAAAATCTCTCGATCGTCATGTACGC
CACTTCGATCACGATTTCTGGCAGCAAAAATGCGAACATGTCGTCCTCCG
AGGCAACCTGGCAAATTTCTCCCATAACGAGAAAATGCTCCTGGCCTTCG
TGCACACGGGCCAACGCCGCCTCCCCATAGCGAGCCCGCATGACAAATTG
TGGGGCATCGGCCTGGGCGCGTGCGACCCCGAGAGCACAAACGCCTCGAC
CATTAAGTGGCCATTCGCGGTGGATCTAGTCGAATACGATTGTGCAGAAC
AGTTCATGATGGCCTCGAATGCTCGCCTATTTGGCGGCGACTTGGCGCTC
TCGGCAATACTTGCTACTGACGATCCTCGAGAGCAAAAATCTCTCGATCG
TCATGTACGCCACTTCGATCACGATTTCTGGCAGCAAAAATGCGAACATG
TCGTCCTCCGAGGCAACCTGGCAAATTTCTCCCATAACGAGAAAATGCTC
CTGGCCTTCGTGCACACGGGCCAACGCCGCCTCCCCATAGCGAGCCCGCA
TGACAAATTGTGGGGCATCGGCCTGGGCGCGTGCGACCCCGAGAGCACAA
ACGCCTCGACCATTAAGTGG
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