mRNA_F-serratus_M_contig1001.128.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1001.128.1
Unique NamemRNA_F-serratus_M_contig1001.128.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1001.128.1 vs. uniprot
Match: A0A5S5BRJ3_9BACL (NADAR domain-containing protein n=1 Tax=Paenibacillus methanolicus TaxID=582686 RepID=A0A5S5BRJ3_9BACL)

HSP 1 Score: 121 bits (304), Expect = 1.450e-32
Identity = 59/120 (49.17%), Postives = 77/120 (64.17%), Query Frame = 1
Query:    1 PFAVDLVEYDCAEQFMMASNARLFGGDLALSAILATDDPREQKSLDRHVRHFDHDFWQQKCEHVVLRGNLANFSHNEKMLLAFVHTGQRRLPIASPHDKLWGIGLGACDPESTNASTIKW 360
            PF V + EY CAEQFMMA  ARLFG D  L AIL +  P+E K+  R VR+FD D W ++C  +VLRG+LA F+ N  + +    TG R L  ASP D++WGIG+G  +P+  N   +KW
Sbjct:   46 PFTVGVTEYSCAEQFMMAEKARLFGDDDMLEAILKSKHPKEMKAYGRAVRNFDKDVWDRECYGIVLRGSLAKFAQNPALGVYLKSTGNRILVEASPQDRIWGIGMGQSNPDVNNP--LKW 163          
BLAST of mRNA_F-serratus_M_contig1001.128.1 vs. uniprot
Match: UPI0008382863 (NADAR family protein n=2 Tax=Paenibacillus TaxID=44249 RepID=UPI0008382863)

HSP 1 Score: 116 bits (291), Expect = 1.610e-30
Identity = 58/120 (48.33%), Postives = 76/120 (63.33%), Query Frame = 1
Query:    1 PFAVDLVEYDCAEQFMMASNARLFGGDLALSAILATDDPREQKSLDRHVRHFDHDFWQQKCEHVVLRGNLANFSHNEKMLLAFVHTGQRRLPIASPHDKLWGIGLGACDPESTNASTIKW 360
            PF VD   Y CAEQFMMA  ARLFG +  L AIL    P+E K+  R VR+FD + W ++C  +VLRG+LA FS NE++      T  R L  ASP D++WGIG+G  +P++ N   +KW
Sbjct:   46 PFEVDGTLYSCAEQFMMAEKARLFGDEEMLEAILKAKHPKEMKAYGRAVRNFDKNIWDKECYGIVLRGSLAKFSQNEELGRYLRSTKNRILVEASPRDRIWGIGMGQSNPDAENP--VKW 163          
BLAST of mRNA_F-serratus_M_contig1001.128.1 vs. uniprot
Match: UPI0004ADF2DC (NADAR family protein n=1 Tax=Gorillibacterium massiliense TaxID=1280390 RepID=UPI0004ADF2DC)

HSP 1 Score: 114 bits (285), Expect = 1.070e-29
Identity = 56/120 (46.67%), Postives = 73/120 (60.83%), Query Frame = 1
Query:    1 PFAVDLVEYDCAEQFMMASNARLFGGDLALSAILATDDPREQKSLDRHVRHFDHDFWQQKCEHVVLRGNLANFSHNEKMLLAFVHTGQRRLPIASPHDKLWGIGLGACDPESTNASTIKW 360
            PF V+  EY CAEQ+MMA  A LFG    L AIL    P+E K+  R VR+FD D W ++C  +V RG+LA FS N K+      T  R L  ASP D++WGIG+G  +P++ N   +KW
Sbjct:   46 PFVVEGTEYSCAEQYMMAEKANLFGDHEMLEAILKAKHPKEMKAYGRAVRNFDKDIWDRECYSIVKRGSLAKFSQNSKLGDYLKSTKNRILVEASPRDRIWGIGMGGANPDAENP--VKW 163          
BLAST of mRNA_F-serratus_M_contig1001.128.1 vs. uniprot
Match: A0A090Y7L3_PAEMA (DUF1768 domain-containing protein n=1 Tax=Paenibacillus macerans TaxID=44252 RepID=A0A090Y7L3_PAEMA)

HSP 1 Score: 112 bits (281), Expect = 4.920e-29
Identity = 56/120 (46.67%), Postives = 74/120 (61.67%), Query Frame = 1
Query:    1 PFAVDLVEYDCAEQFMMASNARLFGGDLALSAILATDDPREQKSLDRHVRHFDHDFWQQKCEHVVLRGNLANFSHNEKMLLAFVHTGQRRLPIASPHDKLWGIGLGACDPESTNASTIKW 360
            PF V+  EY CAEQFMMA  ARLFG D  L+AI+    P+E K+  R VR+FD D W ++C  +V R +LA FS N ++      T  R L  ASP D++WGIG+G  +P+  N   +KW
Sbjct:   46 PFTVEGTEYSCAEQFMMAEKARLFGDDEMLAAIMQAKHPKEMKAYGRAVRNFDKDVWDRECYGIVKRASLAKFSQNSQLGDYLKSTKNRILVEASPRDRIWGIGMGQSNPDVENP--LKW 163          
BLAST of mRNA_F-serratus_M_contig1001.128.1 vs. uniprot
Match: A0A1I2I2Z7_9DELT (NADAR domain-containing protein n=2 Tax=Nannocystis exedens TaxID=54 RepID=A0A1I2I2Z7_9DELT)

HSP 1 Score: 112 bits (279), Expect = 7.550e-29
Identity = 56/109 (51.38%), Postives = 68/109 (62.39%), Query Frame = 1
Query:    4 FAVDLVEYDCAEQFMMASNARLFGGDLALSAILATDDPREQKSLDRHVRHFDHDFWQQKCEHVVLRGNLANFSHNEKMLLAFVHTGQRRLPIASPHDKLWGIGLGACDP 330
            F VD V Y CAEQFMMA  ARLFG +   + ILA D PR  K+L R V  F  D W ++C  +V+RGN A F+ N  M  A + TG + L  ASP D+LWG+GL A DP
Sbjct:   35 FVVDGVTYGCAEQFMMAEKARLFGDEATRAKILAADSPRTHKALGRQVAGFSQDVWDRECLGIVVRGNRAKFAQNPDMRAALLATGGKLLVEASPLDRLWGVGLRADDP 143          
BLAST of mRNA_F-serratus_M_contig1001.128.1 vs. uniprot
Match: A0A1I0JJ35_9BACL (NADAR domain-containing protein n=1 Tax=Paenibacillus sp. NFR01 TaxID=1566279 RepID=A0A1I0JJ35_9BACL)

HSP 1 Score: 112 bits (279), Expect = 9.100e-29
Identity = 55/119 (46.22%), Postives = 72/119 (60.50%), Query Frame = 1
Query:    4 FAVDLVEYDCAEQFMMASNARLFGGDLALSAILATDDPREQKSLDRHVRHFDHDFWQQKCEHVVLRGNLANFSHNEKMLLAFVHTGQRRLPIASPHDKLWGIGLGACDPESTNASTIKW 360
            F V+  EY CAEQFMMA  ARLFG +  L AIL T DP+  K+  R V  FD + W  +C  +V RG++A FS N  +      TG R L  ASP D++WGIG+G  +P++ N   +KW
Sbjct:   47 FTVEGTEYSCAEQFMMAEKARLFGDETMLEAILKTHDPKAMKAFGRAVSRFDKEVWDSQCYDIVKRGSVAKFSQNPALGEYLRSTGNRILVEASPRDRIWGIGMGESNPDAENP--MKW 163          
BLAST of mRNA_F-serratus_M_contig1001.128.1 vs. uniprot
Match: D3EJ56_GEOS4 (NADAR domain-containing protein n=30 Tax=Bacillales TaxID=1385 RepID=D3EJ56_GEOS4)

HSP 1 Score: 111 bits (277), Expect = 1.770e-28
Identity = 55/120 (45.83%), Postives = 74/120 (61.67%), Query Frame = 1
Query:    1 PFAVDLVEYDCAEQFMMASNARLFGGDLALSAILATDDPREQKSLDRHVRHFDHDFWQQKCEHVVLRGNLANFSHNEKMLLAFVHTGQRRLPIASPHDKLWGIGLGACDPESTNASTIKW 360
            PF V+  EY CAEQFMMA  ARLFG +  L +IL    P+E K+  R VR+FD D W ++C  +V R +LA FS N ++      T  R L  ASP D++WGIG+G  +P++ N   +KW
Sbjct:   46 PFTVEGTEYSCAEQFMMAEKARLFGDNEMLESILTAKHPKEMKAYGRAVRNFDKDTWDKECYGIVKRASLAKFSQNPELGDYLKSTKNRILVEASPRDRIWGIGMGQSNPDAENP--VKW 163          
BLAST of mRNA_F-serratus_M_contig1001.128.1 vs. uniprot
Match: UPI00126738C7 (NADAR family protein n=2 Tax=Paenibacillus TaxID=44249 RepID=UPI00126738C7)

HSP 1 Score: 111 bits (277), Expect = 1.820e-28
Identity = 55/120 (45.83%), Postives = 74/120 (61.67%), Query Frame = 1
Query:    1 PFAVDLVEYDCAEQFMMASNARLFGGDLALSAILATDDPREQKSLDRHVRHFDHDFWQQKCEHVVLRGNLANFSHNEKMLLAFVHTGQRRLPIASPHDKLWGIGLGACDPESTNASTIKW 360
            PF V+   Y CAEQ+MMA  ARLFG D  L AI+    P+E K+  R VR+FD D W+ +C  +V RG+LA FS N ++      T  R L  ASP D++WGIG+G  +P++ N   +KW
Sbjct:   46 PFVVEGSTYSCAEQYMMAEKARLFGDDEMLGAIMQAKHPKEMKAFGRAVRNFDKDVWESECYGIVKRGSLAKFSQNPQLGDYLKATKNRILVEASPRDRIWGIGMGQSNPDAENP--MKW 163          
BLAST of mRNA_F-serratus_M_contig1001.128.1 vs. uniprot
Match: A0A2S0UFF3_9BACL (DUF1768 domain-containing protein n=1 Tax=Paenibacillus sp. CAA11 TaxID=1532905 RepID=A0A2S0UFF3_9BACL)

HSP 1 Score: 111 bits (277), Expect = 1.970e-28
Identity = 54/120 (45.00%), Postives = 76/120 (63.33%), Query Frame = 1
Query:    1 PFAVDLVEYDCAEQFMMASNARLFGGDLALSAILATDDPREQKSLDRHVRHFDHDFWQQKCEHVVLRGNLANFSHNEKMLLAFVHTGQRRLPIASPHDKLWGIGLGACDPESTNASTIKW 360
            PF ++ VEY CAEQFMMA  ARLFG    L+ ILA   P++ K+  R V++FD   WQ++C  +V R +LA FS N ++      T +R L  ASP D++WGIG+G  +P++ N   +KW
Sbjct:   46 PFVIEGVEYSCAEQFMMAEKARLFGDGEMLTEILAAKHPKQMKAFGRAVKNFDQAIWQKECYGIVKRASLAKFSQNTQLGEFLRSTKKRILVEASPRDRIWGIGMGGANPDAENP--MKW 163          
BLAST of mRNA_F-serratus_M_contig1001.128.1 vs. uniprot
Match: UPI000FA073C2 (NADAR family protein n=1 Tax=Paenibacillus TaxID=44249 RepID=UPI000FA073C2)

HSP 1 Score: 110 bits (276), Expect = 2.650e-28
Identity = 54/120 (45.00%), Postives = 74/120 (61.67%), Query Frame = 1
Query:    1 PFAVDLVEYDCAEQFMMASNARLFGGDLALSAILATDDPREQKSLDRHVRHFDHDFWQQKCEHVVLRGNLANFSHNEKMLLAFVHTGQRRLPIASPHDKLWGIGLGACDPESTNASTIKW 360
            PF V+ +EY CAEQFMMA  ARLFG +  L+ IL    P+E K+  R VR FD D W ++C  +V R +LA F+ N ++      T  R L  ASP D++WGIG+G  +P++ N   +KW
Sbjct:   46 PFTVEGIEYSCAEQFMMAEKARLFGDEEMLTLILRAKHPKEMKAYGRAVRSFDKDVWDRECYGIVKRASLAKFAQNPQLGDYLKSTKNRILVEASPRDRIWGIGMGGSNPDAENP--VKW 163          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1001.128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5S5BRJ3_9BACL1.450e-3249.17NADAR domain-containing protein n=1 Tax=Paenibacil... [more]
UPI00083828631.610e-3048.33NADAR family protein n=2 Tax=Paenibacillus TaxID=4... [more]
UPI0004ADF2DC1.070e-2946.67NADAR family protein n=1 Tax=Gorillibacterium mass... [more]
A0A090Y7L3_PAEMA4.920e-2946.67DUF1768 domain-containing protein n=1 Tax=Paenibac... [more]
A0A1I2I2Z7_9DELT7.550e-2951.38NADAR domain-containing protein n=2 Tax=Nannocysti... [more]
A0A1I0JJ35_9BACL9.100e-2946.22NADAR domain-containing protein n=1 Tax=Paenibacil... [more]
D3EJ56_GEOS41.770e-2845.83NADAR domain-containing protein n=30 Tax=Bacillale... [more]
UPI00126738C71.820e-2845.83NADAR family protein n=2 Tax=Paenibacillus TaxID=4... [more]
A0A2S0UFF3_9BACL1.970e-2845.00DUF1768 domain-containing protein n=1 Tax=Paenibac... [more]
UPI000FA073C22.650e-2845.00NADAR family protein n=1 Tax=Paenibacillus TaxID=4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1001contigF-serratus_M_contig1001:322330..322689 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score115.2
Seed ortholog evalue2.2e-23
Seed eggNOG ortholog1280390.CBQR020000102_gene2681
Preferred nameybiA
KEGG koko:K09935
Hectar predicted targeting categoryother localisation
EggNOG free text desc.peptidyl-tyrosine sulfation
EggNOG OGs1UY8T@1239,26QSC@186822,4HH0H@91061,COG3236@2,COG5113@1
COG Functional cat.O
Best tax levelPaenibacillaceae
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size360
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928792.8717418-CDS-F-serratus_M_contig1001:322329..3226891622928792.8717418-CDS-F-serratus_M_contig1001:322329..322689Fucus serratus maleCDSF-serratus_M_contig1001 322330..322689 -
1690962574.2939236-CDS-F-serratus_M_contig1001:322329..3226891690962574.2939236-CDS-F-serratus_M_contig1001:322329..322689Fucus serratus maleCDSF-serratus_M_contig1001 322330..322689 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1001.128.1prot_F-serratus_M_contig1001.128.1Fucus serratus malepolypeptideF-serratus_M_contig1001 322330..322689 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1001.128.1

>prot_F-serratus_M_contig1001.128.1 ID=prot_F-serratus_M_contig1001.128.1|Name=mRNA_F-serratus_M_contig1001.128.1|organism=Fucus serratus male|type=polypeptide|length=120bp
PFAVDLVEYDCAEQFMMASNARLFGGDLALSAILATDDPREQKSLDRHVR
HFDHDFWQQKCEHVVLRGNLANFSHNEKMLLAFVHTGQRRLPIASPHDKL
WGIGLGACDPESTNASTIKW
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mRNA from alignment at F-serratus_M_contig1001:322330..322689-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1001.128.1 ID=mRNA_F-serratus_M_contig1001.128.1|Name=mRNA_F-serratus_M_contig1001.128.1|organism=Fucus serratus male|type=mRNA|length=360bp|location=Sequence derived from alignment at F-serratus_M_contig1001:322330..322689- (Fucus serratus male)
CCATTCGCGGTGGATCTAGTCGAATACGATTGTGCAGAACAGTTCATGAT GGCCTCGAATGCTCGCCTATTTGGCGGCGACTTGGCGCTCTCGGCAATAC TTGCTACTGACGATCCTCGAGAGCAAAAATCTCTCGATCGTCATGTACGC CACTTCGATCACGATTTCTGGCAGCAAAAATGCGAACATGTCGTCCTCCG AGGCAACCTGGCAAATTTCTCCCATAACGAGAAAATGCTCCTGGCCTTCG TGCACACGGGCCAACGCCGCCTCCCCATAGCGAGCCCGCATGACAAATTG TGGGGCATCGGCCTGGGCGCGTGCGACCCCGAGAGCACAAACGCCTCGAC CATTAAGTGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1001:322330..322689-

>mRNA_F-serratus_M_contig1001.128.1 ID=mRNA_F-serratus_M_contig1001.128.1|Name=mRNA_F-serratus_M_contig1001.128.1|organism=Fucus serratus male|type=CDS|length=720bp|location=Sequence derived from alignment at F-serratus_M_contig1001:322330..322689- (Fucus serratus male)
CCATTCGCGGTGGATCTAGTCGAATACGATTGTGCAGAACAGTTCATGAT
GGCCTCGAATGCTCGCCTATTTGGCGGCGACTTGGCGCTCTCGGCAATAC
TTGCTACTGACGATCCTCGAGAGCAAAAATCTCTCGATCGTCATGTACGC
CACTTCGATCACGATTTCTGGCAGCAAAAATGCGAACATGTCGTCCTCCG
AGGCAACCTGGCAAATTTCTCCCATAACGAGAAAATGCTCCTGGCCTTCG
TGCACACGGGCCAACGCCGCCTCCCCATAGCGAGCCCGCATGACAAATTG
TGGGGCATCGGCCTGGGCGCGTGCGACCCCGAGAGCACAAACGCCTCGAC
CATTAAGTGGCCATTCGCGGTGGATCTAGTCGAATACGATTGTGCAGAAC
AGTTCATGATGGCCTCGAATGCTCGCCTATTTGGCGGCGACTTGGCGCTC
TCGGCAATACTTGCTACTGACGATCCTCGAGAGCAAAAATCTCTCGATCG
TCATGTACGCCACTTCGATCACGATTTCTGGCAGCAAAAATGCGAACATG
TCGTCCTCCGAGGCAACCTGGCAAATTTCTCCCATAACGAGAAAATGCTC
CTGGCCTTCGTGCACACGGGCCAACGCCGCCTCCCCATAGCGAGCCCGCA
TGACAAATTGTGGGGCATCGGCCTGGGCGCGTGCGACCCCGAGAGCACAA
ACGCCTCGACCATTAAGTGG
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