mRNA_F-serratus_M_contig1001.125.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1001.125.1
Unique NamemRNA_F-serratus_M_contig1001.125.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1001.125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1001contigF-serratus_M_contig1001:103658..107588 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size2325
Cds size1788
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928791.3193347-UTR-F-serratus_M_contig1001:103657..1039331622928791.3193347-UTR-F-serratus_M_contig1001:103657..103933Fucus serratus maleUTRF-serratus_M_contig1001 103658..103933 +
1690962573.477611-UTR-F-serratus_M_contig1001:103657..1039331690962573.477611-UTR-F-serratus_M_contig1001:103657..103933Fucus serratus maleUTRF-serratus_M_contig1001 103658..103933 +
1622928791.3956587-UTR-F-serratus_M_contig1001:107327..1075881622928791.3956587-UTR-F-serratus_M_contig1001:107327..107588Fucus serratus maleUTRF-serratus_M_contig1001 107328..107588 +
1690962573.5308583-UTR-F-serratus_M_contig1001:107327..1075881690962573.5308583-UTR-F-serratus_M_contig1001:107327..107588Fucus serratus maleUTRF-serratus_M_contig1001 107328..107588 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928791.3299742-CDS-F-serratus_M_contig1001:103933..1040041622928791.3299742-CDS-F-serratus_M_contig1001:103933..104004Fucus serratus maleCDSF-serratus_M_contig1001 103934..104004 +
1690962573.4890997-CDS-F-serratus_M_contig1001:103933..1040041690962573.4890997-CDS-F-serratus_M_contig1001:103933..104004Fucus serratus maleCDSF-serratus_M_contig1001 103934..104004 +
1622928791.3413289-CDS-F-serratus_M_contig1001:104531..1050721622928791.3413289-CDS-F-serratus_M_contig1001:104531..105072Fucus serratus maleCDSF-serratus_M_contig1001 104532..105072 +
1690962573.4967768-CDS-F-serratus_M_contig1001:104531..1050721690962573.4967768-CDS-F-serratus_M_contig1001:104531..105072Fucus serratus maleCDSF-serratus_M_contig1001 104532..105072 +
1622928791.3576128-CDS-F-serratus_M_contig1001:105087..1060801622928791.3576128-CDS-F-serratus_M_contig1001:105087..106080Fucus serratus maleCDSF-serratus_M_contig1001 105088..106080 +
1690962573.506447-CDS-F-serratus_M_contig1001:105087..1060801690962573.506447-CDS-F-serratus_M_contig1001:105087..106080Fucus serratus maleCDSF-serratus_M_contig1001 105088..106080 +
1622928791.3720329-CDS-F-serratus_M_contig1001:106662..1067301622928791.3720329-CDS-F-serratus_M_contig1001:106662..106730Fucus serratus maleCDSF-serratus_M_contig1001 106663..106730 +
1690962573.5164077-CDS-F-serratus_M_contig1001:106662..1067301690962573.5164077-CDS-F-serratus_M_contig1001:106662..106730Fucus serratus maleCDSF-serratus_M_contig1001 106663..106730 +
1622928791.3828824-CDS-F-serratus_M_contig1001:107212..1073271622928791.3828824-CDS-F-serratus_M_contig1001:107212..107327Fucus serratus maleCDSF-serratus_M_contig1001 107213..107327 +
1690962573.523596-CDS-F-serratus_M_contig1001:107212..1073271690962573.523596-CDS-F-serratus_M_contig1001:107212..107327Fucus serratus maleCDSF-serratus_M_contig1001 107213..107327 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1001.125.1prot_F-serratus_M_contig1001.125.1Fucus serratus malepolypeptideF-serratus_M_contig1001 103934..107327 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1001.125.1

>prot_F-serratus_M_contig1001.125.1 ID=prot_F-serratus_M_contig1001.125.1|Name=mRNA_F-serratus_M_contig1001.125.1|organism=Fucus serratus male|type=polypeptide|length=596bp
MLGTDSNGVGSHDRGGRNLAAILGPQEGFAHDGTPLERNWPRRESILRQS
PRSLVGCNKSTPAAISTPHTDGAATFGSELLPLNHIPSLSSFLGTSSLPR
GPETPENKSSRRHSPVCTPAGTNLPQQVGTIGRRANGCTRGTGSRISIRA
NRRPSTTSPRSHAFNPAVAAKERESTLTKAADGWNAYVDTFKGDLAGREF
ATNPFGPAEASDGVAKVSPLTGLVPLHGGQARSNPSSPLPTTSYGAIVLR
SSARVGELQAPFAPSAPEQHHNPLLGTDESISSLDKTDAEHGVVEVGEAF
GSSAPKRERMEKSGFGSSAGSDGDGFDVLNWLSWKNAGPQSGDGHCDANT
STSTEAKIKNIDGGEGDPIAASGGGGNATPQDDDGNDGYTGVVRSATEWS
GLERSCNKKHGEVVGGDVRAGRLRNNYNNVRSKTDAVNSPEPQPGDPLPR
RVDLGLPSEERRGRRSQVGSQGLAINSSPKERKSSTSRGADSVPRAADGE
SVLLSSVSAEGCWENITSTNGRPTEEDQREADELKRKELALADLEHSYCS
DLSSFDLSLSPSEEGGCSAQDMSLSPAMAKLKCFNSACPRLPQEN*
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mRNA from alignment at F-serratus_M_contig1001:103658..107588+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1001.125.1 ID=mRNA_F-serratus_M_contig1001.125.1|Name=mRNA_F-serratus_M_contig1001.125.1|organism=Fucus serratus male|type=mRNA|length=3931bp|location=Sequence derived from alignment at F-serratus_M_contig1001:103658..107588+ (Fucus serratus male)
GGCGCTCTTGGCGGCGACGCGTTTGCTGGCGGAAGGGATGGACTGCCGGC
TCGGAGGCGAGCGTTGAAGGGCGCCTCGGTCGCCTCACCTGTTCAGGATG
TGTCAGACCGCGGTTCAACTTCGGAAAAAAACGTTTCTGATTGTGGTCTA
AATCCTCGAGATTCCTTGTCTGGCGAAGGCTTCTCTGAGACAGAAACCAG
AGAATCGGCGAGGAGCGATACCGGGGGGCGGGAGCGACTCTCGGATGTTG
TTGACACTGTTACACCGCGTCGTCGCATGCTCGGAACCGACTCAAACGGG
GTCGGCAGCCATGACAGAGGGGGGAGGAATCTTGCGGCTATATTGGGGTG
AGTGAGGGGGGAGACACGACCTGCTTTATTCTGTCATATTATTGGTCGCG
GCAGATACTGTACCACACTGGCGTTCTCACAAGCGGTAGATAAGACCAAG
TCGATTTCCCTGGCGCACTTTCGGTTCTTGGTTTTGCTCGAGAAGCGCCG
CGTGAATCCCCCCAGCCTCAAGGGTGTACCTTACAGTGTGCCTCTAGTCG
CGAAACATGTGTGTGTCGTGATATCAAAAAAGAGACCCTCGTAAGGTTTG
ACCGTGGTTTCCAAGGCCGTTCAAAACTTCCCCCGACTGCCGTGATCGAG
GGTGTGTCCATAGCCGCGTGATCACCATTCCGTGGGGGTTTATAAAACAA
GGCAAAGAGACGTTTCGAACCACCGTGTTTCAGACAAACAAATGTGCGTC
CCTAAGCTTTATTTCACACTTCTCGACACGACCATCGTGACCACTGCGAA
CGTTGTGACTGTTGTGACCGTTGACCTGTGCGTGCAACCGACTCACTCGT
ACTTTCATTCGTATTGTCGAGTAGCCCGCAAGAAGGCTTTGCCCATGACG
GGACACCGCTCGAAAGAAACTGGCCAAGGCGGGAATCTATCCTGCGGCAG
AGCCCTCGATCATTGGTGGGGTGCAACAAGTCAACTCCTGCGGCAATCTC
AACTCCGCATACTGATGGGGCGGCGACTTTTGGAAGCGAGCTCTTACCAT
TGAACCATATCCCGTCCTTATCTTCCTTTTTGGGAACATCGTCGCTGCCT
CGTGGCCCAGAAACGCCCGAAAATAAATCCTCACGTCGGCACTCGCCCGT
ATGCACTCCCGCCGGAACGAATCTTCCTCAACAAGTTGGTACTATTGGTC
GACGGGCCAACGGGTGCACGAGAGGTACCGGTAGCCGTATCTCGATAAGG
GCGAACAGGCGCCCTTCAACTACCTCGCCGCGCTCCCACGCATTCAACCC
AGCTGTGGCCGCAAAGGAACGAGAGTCCACCCTCACCAAGGCAGCCGACG
GTTGGAACGCGTACGTAGACACCTTTAAAGGCGACTTGGCGGGTCGTGAG
TTCGCTACCAATCCTGCCCGTTCGGAGAAGTTTGGTCCCGCCGAAGCTTC
GGACGGCGTGGCAAAAGTGAGCCCGCTCACCGGTCTTGTTCCTTTGCATG
GAGGCCAGGCGCGTAGCAATCCATCTTCTCCGTTGCCTACCACAAGTTAC
GGAGCGATTGTGTTGCGGTCGTCTGCGCGAGTGGGCGAGCTTCAGGCGCC
CTTTGCTCCGTCTGCGCCCGAGCAGCATCATAATCCTCTCCTGGGGACCG
ATGAGAGTATTTCATCGTTAGATAAAACGGATGCTGAGCACGGCGTTGTA
GAAGTTGGCGAGGCGTTTGGTTCGTCGGCTCCGAAAAGAGAGAGGATGGA
GAAGTCAGGCTTTGGTAGCAGCGCAGGCAGCGACGGCGATGGGTTTGATG
TTCTGAATTGGCTTTCCTGGAAGAACGCCGGCCCTCAGAGTGGTGATGGT
CACTGTGACGCGAACACGAGCACTTCGACCGAGGCCAAAATCAAAAACAT
CGATGGTGGCGAGGGCGATCCCATAGCTGCTTCCGGGGGTGGTGGCAATG
CCACTCCTCAGGACGATGATGGCAATGACGGTTACACTGGCGTCGTTCGT
TCAGCCACAGAGTGGTCGGGACTCGAAAGGAGTTGCAACAAGAAGCACGG
CGAGGTTGTTGGGGGTGACGTGCGCGCGGGAAGACTCCGTAACAATTACA
ACAATGTGCGAAGTAAAACTGATGCAGTAAATTCGCCGGAACCACAGCCC
GGCGATCCGTTGCCTAGGCGAGTCGACTTGGGACTACCCTCCGAAGAGAG
ACGTGGGCGCAGGAGTCAGGTGGGATCCCAAGGACTCGCGATAAATAGCA
GCCCCAAGGAAAGAAAATCTTCGACCAGCCGGGGAGCGGATTCTGTCCCT
CGCGCCGCGGACGGTGAAAGTGTTCTGTTGAGTTCCGTCTCTGCCGAGGG
ATGCTGGGAAAATATAACGAGTACGAACGGCAGGCCTACGGAAGAAGATC
AGCGTGAGGCGGATGAGTTGAAGGTATTAAGGTGTTGTGGGAAGGTAGTG
TAGTTTAGAGTAGTGCCACCACGAGGGAACAAGGGAACGAAATATAGTGC
AGGCCGTGACAAAGCGACAAAAACACGGATCTTACCCCGTCGCGATCACT
CCTGACGCATTTCGAGTTCGTGCTTTAGGAGGGAAAGTACCAGTTGCAAA
GAAACAACTCAAGTGTTTCTAGTACGTAGCGTAAGTCTGTACCATTACAA
ACGATAACCTCAAACCGTGAATTACTTCGAGAGCTTATACAGGGGTAATC
CACGCGGCGAAAAATGAGAGCGTGTCACGTGCTGATTGCTGATTGGTAAG
GCACCAGGGTCCCGAGCATTCGTGTCAAGAGTGACGTCATGATAGTAGTA
CTAACACCTCGTCCCTCGCGCCATCAAGTTGTTGGCGTGATGGAATGGAT
GGCGCGAACTTCCTATTTAGATCATGCGGTTGCTTTCGCTTTGACAAATA
TCTTGCATTATAAAAAGACAACATTTTACTCCGAGACCTTCCCCTCTTCC
CCTCTCGCCCCTCTCGCCCCCTCCTCACCATCTCGTCGGTCGTGCTCGCC
CACAGAGGAAGGAACTCGCGCTGGCCGATCTCGAGCACTCTTATTGCTCG
GATTTAAGTTCGTTCGACTTGAGGTGAAGCACGAATGAAGTTGCGTTCAA
TACATTATCTGTACGATGCTAAGATCATAATTGGATTACTATAATACCTC
AAGAACGACCCGCGTCGCGCTACTCGAGCAGTGCTCAGGTAGTGGACCCA
TCGAACCGAGGAGCACGTTTACGTTGATGACAGACCCCGATACTTGTTTT
GTGCAAAATCTATTCCGGTGTGGATAGAACGTATGCATAGCGCGGCTCAA
CCCTATTTTGCTTGCGGTTGATGGATTTCAAAGCATCGATGTCAAATGCC
GCACATCTAGGGCTAAGCTGAAGAACGATGACTGTTTCGAGCCGAAGAAA
CTTCTTCGCTGCTTATAGTCAAGATAGGGATACGCACACGTAATTTCGTC
CAAAGTGCGTGGAAACATGCCCCCCATTTCGGGAGCTCCCACCCAGCTCG
TGTCGGCCTCATACAGCTCTATGTTGCCAATTGCCAATCAAATGCGCCCA
TGCAGCCTGTCACCATCGGAGGAGGGAGGATGTTCTGCTCAAGACATGTC
TCTCTCACCAGCAATGGCTAAGCTCAAATGTTTCAACTCAGCCTGCCCAA
GATTGCCGCAGGAAAATTAGCGTGCTGTCTCGGTTTCCGACCAAGATGGA
GAGACCGATCTAGATTCGGTCGTACTCGCAAGTGCGGAAGGCAATGGAAA
AATAAGAATGACTGATGTCCCTTGTCCTATGGTGGCTTCAACCCCATCTG
CTCGGGAGGATTCATGCGTACAAGACAGTAGTACAGTGGTGCAGGCTTGG
GGCGACAAGGGAAGGATGCCACGAACGAGCTATCGGCGAATTGAGGTCGT
ATAGACATCTAGTTAGCAAATAAACCTTTAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1001:103658..107588+

>mRNA_F-serratus_M_contig1001.125.1 ID=mRNA_F-serratus_M_contig1001.125.1|Name=mRNA_F-serratus_M_contig1001.125.1|organism=Fucus serratus male|type=CDS|length=3576bp|location=Sequence derived from alignment at F-serratus_M_contig1001:103658..107588+ (Fucus serratus male)
ATGCTCGGAACCGACTCAAACGGGGTCGGCAGCCATGACAGAGGGGGGAG
GAATCTTGCGGCTATATTGGGATGCTCGGAACCGACTCAAACGGGGTCGG
CAGCCATGACAGAGGGGGGAGGAATCTTGCGGCTATATTGGGCCCGCAAG
AAGGCTTTGCCCATGACGGGACACCGCTCGAAAGAAACTGGCCAAGGCGG
GAATCTATCCTGCGGCAGAGCCCTCGATCATTGGTGGGGTGCAACAAGTC
AACTCCTGCGGCAATCTCAACTCCGCATACTGATGGGGCGGCGACTTTTG
GAAGCGAGCTCTTACCATTGAACCATATCCCGTCCTTATCTTCCTTTTTG
GGAACATCGTCGCTGCCTCGTGGCCCAGAAACGCCCGAAAATAAATCCTC
ACGTCGGCACTCGCCCGTATGCACTCCCGCCGGAACGAATCTTCCTCAAC
AAGTTGGTACTATTGGTCGACGGGCCAACGGGTGCACGAGAGGTACCGGT
AGCCGTATCTCGATAAGGGCGAACAGGCGCCCTTCAACTACCTCGCCGCG
CTCCCACGCATTCAACCCAGCTGTGGCCGCAAAGGAACGAGAGTCCACCC
TCACCAAGGCAGCCGACGGTTGGAACGCGTACGTAGACACCTTTAAAGGC
GACTTGGCGGGTCGTGAGTTCGCTACCAATCCTCCCGCAAGAAGGCTTTG
CCCATGACGGGACACCGCTCGAAAGAAACTGGCCAAGGCGGGAATCTATC
CTGCGGCAGAGCCCTCGATCATTGGTGGGGTGCAACAAGTCAACTCCTGC
GGCAATCTCAACTCCGCATACTGATGGGGCGGCGACTTTTGGAAGCGAGC
TCTTACCATTGAACCATATCCCGTCCTTATCTTCCTTTTTGGGAACATCG
TCGCTGCCTCGTGGCCCAGAAACGCCCGAAAATAAATCCTCACGTCGGCA
CTCGCCCGTATGCACTCCCGCCGGAACGAATCTTCCTCAACAAGTTGGTA
CTATTGGTCGACGGGCCAACGGGTGCACGAGAGGTACCGGTAGCCGTATC
TCGATAAGGGCGAACAGGCGCCCTTCAACTACCTCGCCGCGCTCCCACGC
ATTCAACCCAGCTGTGGCCGCAAAGGAACGAGAGTCCACCCTCACCAAGG
CAGCCGACGGTTGGAACGCGTACGTAGACACCTTTAAAGGCGACTTGGCG
GGTCGTGAGTTCGCTACCAATCCTTTTGGTCCCGCCGAAGCTTCGGACGG
CGTGGCAAAAGTGAGCCCGCTCACCGGTCTTGTTCCTTTGCATGGAGGCC
AGGCGCGTAGCAATCCATCTTCTCCGTTGCCTACCACAAGTTACGGAGCG
ATTGTGTTGCGGTCGTCTGCGCGAGTGGGCGAGCTTCAGGCGCCCTTTGC
TCCGTCTGCGCCCGAGCAGCATCATAATCCTCTCCTGGGGACCGATGAGA
GTATTTCATCGTTAGATAAAACGGATGCTGAGCACGGCGTTGTAGAAGTT
GGCGAGGCGTTTGGTTCGTCGGCTCCGAAAAGAGAGAGGATGGAGAAGTC
AGGCTTTGGTAGCAGCGCAGGCAGCGACGGCGATGGGTTTGATGTTCTGA
ATTGGCTTTCCTGGAAGAACGCCGGCCCTCAGAGTGGTGATGGTCACTGT
GACGCGAACACGAGCACTTCGACCGAGGCCAAAATCAAAAACATCGATGG
TGGCGAGGGCGATCCCATAGCTGCTTCCGGGGGTGGTGGCAATGCCACTC
CTCAGGACGATGATGGCAATGACGGTTACACTGGCGTCGTTCGTTCAGCC
ACAGAGTGGTCGGGACTCGAAAGGAGTTGCAACAAGAAGCACGGCGAGGT
TGTTGGGGGTGACGTGCGCGCGGGAAGACTCCGTAACAATTACAACAATG
TGCGAAGTAAAACTGATGCAGTAAATTCGCCGGAACCACAGCCCGGCGAT
CCGTTGCCTAGGCGAGTCGACTTGGGACTACCCTCCGAAGAGAGACGTGG
GCGCAGGAGTCAGGTGGGATCCCAAGGACTCGCGATAAATAGCAGCCCCA
AGGAAAGAAAATCTTCGACCAGCCGGGGAGCGGATTCTGTCCCTCGCGCC
GCGGACGGTGAAAGTGTTCTGTTGAGTTCCGTCTCTGCCGAGGGATGCTG
GGAAAATATAACGAGTACGAACGGCAGGCCTACGGAAGAAGATCAGCGTG
AGGCGGATGAGTTGAAGTTTGGTCCCGCCGAAGCTTCGGACGGCGTGGCA
AAAGTGAGCCCGCTCACCGGTCTTGTTCCTTTGCATGGAGGCCAGGCGCG
TAGCAATCCATCTTCTCCGTTGCCTACCACAAGTTACGGAGCGATTGTGT
TGCGGTCGTCTGCGCGAGTGGGCGAGCTTCAGGCGCCCTTTGCTCCGTCT
GCGCCCGAGCAGCATCATAATCCTCTCCTGGGGACCGATGAGAGTATTTC
ATCGTTAGATAAAACGGATGCTGAGCACGGCGTTGTAGAAGTTGGCGAGG
CGTTTGGTTCGTCGGCTCCGAAAAGAGAGAGGATGGAGAAGTCAGGCTTT
GGTAGCAGCGCAGGCAGCGACGGCGATGGGTTTGATGTTCTGAATTGGCT
TTCCTGGAAGAACGCCGGCCCTCAGAGTGGTGATGGTCACTGTGACGCGA
ACACGAGCACTTCGACCGAGGCCAAAATCAAAAACATCGATGGTGGCGAG
GGCGATCCCATAGCTGCTTCCGGGGGTGGTGGCAATGCCACTCCTCAGGA
CGATGATGGCAATGACGGTTACACTGGCGTCGTTCGTTCAGCCACAGAGT
GGTCGGGACTCGAAAGGAGTTGCAACAAGAAGCACGGCGAGGTTGTTGGG
GGTGACGTGCGCGCGGGAAGACTCCGTAACAATTACAACAATGTGCGAAG
TAAAACTGATGCAGTAAATTCGCCGGAACCACAGCCCGGCGATCCGTTGC
CTAGGCGAGTCGACTTGGGACTACCCTCCGAAGAGAGACGTGGGCGCAGG
AGTCAGGTGGGATCCCAAGGACTCGCGATAAATAGCAGCCCCAAGGAAAG
AAAATCTTCGACCAGCCGGGGAGCGGATTCTGTCCCTCGCGCCGCGGACG
GTGAAAGTGTTCTGTTGAGTTCCGTCTCTGCCGAGGGATGCTGGGAAAAT
ATAACGAGTACGAACGGCAGGCCTACGGAAGAAGATCAGCGTGAGGCGGA
TGAGTTGAAGAGGAAGGAACTCGCGCTGGCCGATCTCGAGCACTCTTATT
GCTCGGATTTAAGTTCGTTCGACTTGAGAGGAAGGAACTCGCGCTGGCCG
ATCTCGAGCACTCTTATTGCTCGGATTTAAGTTCGTTCGACTTGAGCCTG
TCACCATCGGAGGAGGGAGGATGTTCTGCTCAAGACATGTCTCTCTCACC
AGCAATGGCTAAGCTCAAATGTTTCAACTCAGCCTGCCCAAGATTGCCGC
AGGAAAATTAGCCTGTCACCATCGGAGGAGGGAGGATGTTCTGCTCAAGA
CATGTCTCTCTCACCAGCAATGGCTAAGCTCAAATGTTTCAACTCAGCCT
GCCCAAGATTGCCGCAGGAAAATTAG
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