mRNA_F-serratus_M_contig1001.121.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1001.121.1
Unique NamemRNA_F-serratus_M_contig1001.121.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1001.121.1 vs. uniprot
Match: A0A5J4ZBM1_PORPP (Protein ORANGE-LIKE, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4ZBM1_PORPP)

HSP 1 Score: 59.7 bits (143), Expect = 6.110e-6
Identity = 32/89 (35.96%), Postives = 44/89 (49.44%), Query Frame = 1 
Query:  397 AGGSVGVLGTLIQLELKQEALRSRRNCPYCNGSGKLVCAMCCSAGTFTMKLPGAETYSTLPXXXXXXXXXXXXLNCRGDGRAVPRELDR 663
            AGG+VGV+GTLI LE  +     R+ C YC G+GKL+C  CC        +P A+T                 ++C G GR +P   +R
Sbjct:  243 AGGTVGVMGTLIALEWAKIDTLERQQCSYCRGTGKLICGSCCGLRV----MPDAQT-GQRDCDNCSGQGGVECMHCEGSGRLLPIRYER 326
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1001.121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A5J4ZBM1_PORPP6.110e-635.96Protein ORANGE-LIKE, chloroplastic n=1 Tax=Porphyr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1001contigF-serratus_M_contig1001:26391..32621 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionDnaJ Cysteine-Rich Domain-Containing Protein
Ec32 orthologEc-08_002050.1
Exons4
Model size1678
Cds size678
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1001.121.1prot_F-serratus_M_contig1001.121.1Fucus serratus malepolypeptideF-serratus_M_contig1001 26439..31669 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928791.6877031-UTR-F-serratus_M_contig1001:26390..264381622928791.6877031-UTR-F-serratus_M_contig1001:26390..26438Fucus serratus maleUTRF-serratus_M_contig1001 26391..26438 +
1690962573.6543703-UTR-F-serratus_M_contig1001:26390..264381690962573.6543703-UTR-F-serratus_M_contig1001:26390..26438Fucus serratus maleUTRF-serratus_M_contig1001 26391..26438 +
1622928791.7473056-UTR-F-serratus_M_contig1001:31669..326211622928791.7473056-UTR-F-serratus_M_contig1001:31669..32621Fucus serratus maleUTRF-serratus_M_contig1001 31670..32621 +
1690962573.712258-UTR-F-serratus_M_contig1001:31669..326211690962573.712258-UTR-F-serratus_M_contig1001:31669..32621Fucus serratus maleUTRF-serratus_M_contig1001 31670..32621 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928791.7024074-CDS-F-serratus_M_contig1001:26438..266471622928791.7024074-CDS-F-serratus_M_contig1001:26438..26647Fucus serratus maleCDSF-serratus_M_contig1001 26439..26647 +
1690962573.665723-CDS-F-serratus_M_contig1001:26438..266471690962573.665723-CDS-F-serratus_M_contig1001:26438..26647Fucus serratus maleCDSF-serratus_M_contig1001 26439..26647 +
1622928791.7138765-CDS-F-serratus_M_contig1001:29757..299501622928791.7138765-CDS-F-serratus_M_contig1001:29757..29950Fucus serratus maleCDSF-serratus_M_contig1001 29758..29950 +
1690962573.678177-CDS-F-serratus_M_contig1001:29757..299501690962573.678177-CDS-F-serratus_M_contig1001:29757..29950Fucus serratus maleCDSF-serratus_M_contig1001 29758..29950 +
1622928791.7240756-CDS-F-serratus_M_contig1001:30216..303921622928791.7240756-CDS-F-serratus_M_contig1001:30216..30392Fucus serratus maleCDSF-serratus_M_contig1001 30217..30392 +
1690962573.6892498-CDS-F-serratus_M_contig1001:30216..303921690962573.6892498-CDS-F-serratus_M_contig1001:30216..30392Fucus serratus maleCDSF-serratus_M_contig1001 30217..30392 +
1622928791.7343357-CDS-F-serratus_M_contig1001:31569..316691622928791.7343357-CDS-F-serratus_M_contig1001:31569..31669Fucus serratus maleCDSF-serratus_M_contig1001 31570..31669 +
1690962573.6999342-CDS-F-serratus_M_contig1001:31569..316691690962573.6999342-CDS-F-serratus_M_contig1001:31569..31669Fucus serratus maleCDSF-serratus_M_contig1001 31570..31669 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1001.121.1

>prot_F-serratus_M_contig1001.121.1 ID=prot_F-serratus_M_contig1001.121.1|Name=mRNA_F-serratus_M_contig1001.121.1|organism=Fucus serratus male|type=polypeptide|length=226bp
MDTTMSMLYIFVFVLLLSCPVARAFLASGWQEAASSQEVERSRHIPTSST
GFVAPSGTAELKGRKARDFRRERAYRRAAQRPERRVQSPGRDQKVAPLSA
LNPDTVYSAKEWIAGVAGGSVGVLGTLIQLELKQEALRSRRNCPYCNGSG
KLVCAMCCSAGTFTMKLPGAETYSTLPCPGCSGKRYITCLNCRGDGRAVP
RELDRKTGDAVDLRLEEIGMGSVGQ*
back to top

mRNA from alignment at F-serratus_M_contig1001:26391..32621+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1001.121.1 ID=mRNA_F-serratus_M_contig1001.121.1|Name=mRNA_F-serratus_M_contig1001.121.1|organism=Fucus serratus male|type=mRNA|length=6231bp|location=Sequence derived from alignment at F-serratus_M_contig1001:26391..32621+ (Fucus serratus male)
GTCCAAGTTCATAGATCGGTACAAGTCTTTGGCCCGCCCTGCTTGTTGAT
GGACACAACCATGTCTATGCTGTACATTTTTGTTTTCGTTTTGCTGTTGT
CTTGCCCAGTCGCGAGAGCTTTTTTGGCTTCCGGGTGGCAAGAGGCAGCG
AGCTCACAAGAAGTTGAGAGAAGCCGGCACATACCAACATCCTCCACGGG
CTTCGTTGCTCCTTCAGGAACAGCGGAACTCAAGGGGAGAAAAGCAAGGG
ACTTCAGGTGAAGGTTCGACTAGGAAGACACAAGTCGGAATACCGGCCGT
CGAAGGAATTGGGTGGAGTTTGGGGGAACATTGTCGTCGGATGCTGTTTT
AGTTAGATCACTACAAACGTGAACACCTGACAAGAGCTGTTTTGTGTGCG
GTAACTGTACTGTATAATAAGCGAGTAATAATTCCCCCGGATTCATCCAT
ATCTGCAATATACTATATACCGGGTAGACTAAAAATGTGAATGCACCTAG
ACCTTCTGATCTTTACTACAAGTACATCATACAGTTTGTTTTCGGTCATA
CAAACAGTTGTGTAACCAATTGTGGTTAGCTGACAGTCCCGTTTGAGCAT
GATGATTTCTACCTGGTACTTTCTTATAGTATTCAGTATTACTACGTACT
GCTATTAATAGACATGTTCGGCTGTCACGTCCCGCGTCAGCCCGTCCATT
TTGCACACCCATGCTGAATTTAGCGTCGGGTGCAAGTTCATTTGGTAGAC
TTCTACTTACAAGTCCACGAAATGTGGTCGATCTAGGCTCCGCAGCCTGT
AACAGCAGTACACCATTTTCAGCTGCTGCCGTTCCAGAATCTACTCTCAG
CCTCAGATGGTCGTCAGTATGTAAGGATGCATACTTGTAGACATCACTTG
CAGCAGGGTATGAATCAACCGGGTAAGGTTGCCAATCCTGCTCGTGGCTA
GCTGAACAGGGAAAAATGAATATTTCCCCATCACCGTTCGTGCCTGAGAG
TTTGGTCTCGCGGGACGGGTTCGGCCGTCCCGCCCCGCGTCAGCCTGCTC
ATTCTCCACACTCAGGCTAAAATATGGTTCTTTTTCACGGGACTCCTCCC
AATCGATTTCAGCGGTGGCGTCCGTGTACCTGTACGCTGCCACAGCATTG
GAAAGGGTTGCTGTGTAGCTCTACAGCACCCGATAACTGGTACGCGCAAC
CTGCTCTCTCCCCTGCTACAAATACGGCTTACCGCGTCTCTTACCGCGTC
TCCGACATTCCGCGTTCTTGCGCTGTAGACATGCACTGCTGTGAGATATT
TTGACCGTGGAGGTAATGCAGACAGCGCCATCACGGAGGTCATTGCTGTT
GCTGCTCATGCATCGTGAGGCCTGGCACGATAGACTGGACTGGCTATGGT
GAATGCGCGACGGTCGCTGTTTTCTCATATTCGGCGAAATCGCTGACAGT
TCGAGCTACTTAGACCAGTGCTGTTTGTACCGACTGTCCTGTCCACTATC
CACTGTTAACAATAGACAGTCCTGGAGTGAAGGGGCGTTGTACCGAAATA
GACCGAAATGTGTAATGTTACGAAACTGAGGTAAATATGTACACTTTGTA
AAGCAGAACCCGAGAAATGTACTGCTCTAGTTTTCGAGGAGTAAAGCTTT
TATCAATAAAACGACTCATATCATAAAAGGCTTGATAAAAAAAATAACCG
CGCACACCAAAGAAAGAGCCACAGGTGGCCAGGGGGGCTGAATCACATAT
TCACATGCCAAAACGCCACGTTAACAGCCTCAATCCATTCCGTGCCTGCA
CGGGTTTCTTCGACGGCTTCCAGATACACTAAGCGACGTGACTTCGAGGG
TGCTAACACCCCCGACGCGTTATTGATACCTGGTAGTGGCTTTACTAGCC
TCGTCCGCCTGCATTTCTCTCTTGTAGACGGTCTCTCTCCCCGAGTCCCT
CCTCCTTACTCCAAGAGGCTTTAAAACCTCCCCCCCCGTCCTGACACTTT
TTTAGCCGACACCCCTGCCTCTCTAACGCCGGGGTTCTCCAGTTACCTGG
ACTACCAAACGCCCGAACGTCGCTTTTACACAACATCGTCCCGCCCCTTC
ACTCCTTCTCCTTGCCGCCCTCCTCCCCCCCTAACTGCACCCTCGACAGT
CCCGAACACGATTCGCTTCGGTAACCGTAGATCGCTCATGCGAATAAGCT
TGCCCACCCACACTAGCCTTCTCGTGCGCACGATTGTCTCCACGCTCTTC
TCTCCCACACTCAGTCATCGCAACAGCGCGATTGGTGGGATATTTTGTTT
CCCCCTTTCGCACTATGCCCCGAGGATCTCGAGCAAGAACCGGTGTAAGG
TGTGCAAGGTTTGCTTGTGGCGCACCGACCTAAACGTTTTGACGTTTTCC
CCCCCTAACTAGGGGATAGGGGATGCTCAGAAAGTCGAGATGCGTTCAGA
TTTTTCTTTAAAAACACAGCCACGAGTTTGCTTGTATGATAGTGCAACAC
CGCCATGGGCAACACGCCCAAATCCGTACTGACGGCTTGCGACTATGACG
GCGACTATGAGCGCTTTGCGTGCGTCTTTATTCTGAAATTCGTTCGGTTA
CATGCATCGCTATTTGAATAGCAGCGGGTAATAACACGCTACATACAACG
ACCAGTACAGTTCGTAATGTTTTTCCCTACCCCTCGACGCGAATAGCCTG
GCATGACGCATGACGCATGACGCATGACACATGACCAGGGTAGAAAAGAG
AGAGGTCCTTCCTCCGAGCTACGGGATGCCGAGTGGAGCGAAAAATCATA
GGTTTTAAATCCTATTCTTGTAGCGAGAGTTGTCACCCGCGTTCGGCCCA
CAAGGCGAGATTCGTATGGATATGCCGGGACACAAAGCGGTCGTACAGAA
CGATCGCTTTCAGCCGCAGTAAGGCGTCGGTCGTAGGTTGTTCGGGAAAT
AGCGATGAGCATCCTGCTGTCGCTGTCTCTTAATGTCCTTATGTATCGCT
CAAGTACTGTATCTCGAGATATCGACGAGGTTGTGCCTAGCTATTTATGG
TAGATTATGGTATGGTTATCGTATGGTTATGGTACCCACATGGCTCTCCA
AGTACTTTGCCGAGAGACACCATGATGCTAAAACGGTCGACTACTGATAC
TTTTGGACTGTTGGTACAGGATTGTCATTGTCCACCAGGTACAGAAGCTC
TCCGCAGCTCCCAAAGCACGATGCATGACACTCTACGTCAGCGGTTGGCG
TTCCCCACTGTGATTTGTGATCCCCGCCGTACCTGTGCCTGTACCTATGC
CTGCCTTCGTCGTCTCGCGGTCCCGTGTGGCGCCGGGGTGTTGCGGTGCC
GCGTTACTTTGCCCCAGGAGAGAACGCGCTTACCGTCGCGCCGCTCAGCG
GCCAGAGCGGCGCGTACAGAGCCCCGGTCGCGACCAAAAGGTGGCGCCGC
TCAGCGCTTTGAATCCAGACACGGTGTACTCGGCGAAAGAGTGGATCGCG
GGAGTGGCGGGGGGGTCTGTGGGGGTCTTGGGGACGCTCATCCAGCTCGA
ACTCAAGCAGGTACTGCTGTTTGAAAGGGAGGTGGAGGAGGGGCACGGGT
AAGAGAGTGAAGAAGGTCGTAAAGGCCGATGGTACGGGGATAAAAGAAAG
GTCATACCGGGGTTGTTACTTCGGTCGCCAGGGGGTAGATGCGCCGAAAG
CATTCGACCTGTGATGCCCGGGCAATGTTGCAAGCTGAAGTGATTTCACT
CAAACTATTATTTTTAATACTGTACCTGTATCCCGTCTTGCTCTCGTTGG
CTGAACGCACGTGATGCCACACACAGGAGGCGCTCAGGTCCCGTCGGAAT
TGTCCGTATTGCAATGGCAGCGGCAAGCTGGTGTGCGCGATGTGCTGCTC
GGCGGGGACTTTCACGATGAAGCTCCCCGGGGCAGAAACGTACAGCACGC
TGCCGTGCCCCGGGTGCTCGGGCAAGCGGTACATCACGTGCTTGAACTGC
AGGTGAGGGCTGAGGGGGAAGGCCTATCGTTCAGGTGTGGTGTTTTTGGC
ATTTGTAGTACCTTAAGACTGCAGTGGCCCCGAGTGTTCGCACGATGCTG
TGAGTAGCGAGCTCGCGTTGAGAAGGCTTGGTCGATGGGAAATGGTCTGC
TTGGGGCACGTTCGACTTCGAGTCGTGATCCACCATATGGCAAGAGCGCC
ACGACGCAGCAGTGGTTCCGAAAGATGGCGGGGTTTTATGCTTTTCGGCT
GGCAAGAGTGCAGCTGTGCCGTATTGCTTGTCCAATTTATGAATCTAAAT
ACCTTCTGGGAGTCAACTGAGCTCCATCCCTCCTCCCAAGTATTGATATT
AATAATTGCTAGCATCCACAAATTAAAGAAAGTTGCCCACGTGACCTGCT
ATTGTTTTACTCAATAACTTAATGCTTGGAGAAATCCCACTTTCCATTCC
CTATCTCTCTCTCTCTCTCTCCAGTATGTATGTATGTATGTATGTATATT
TATTGTATGTATGTATGTATGTATGCATGATTTATGTATGATGTATGTAT
GTATGTATGTATGCATGTATGTGTGGTCATCACATATGGCAAGAGAAGGA
CGAACCGGGTAAGGTTCCCAATTCTGATCATGGTCAGCTGAACATGAAAA
TATGAAATAATATTTTCCTGTCCGCGTTCGCGCCCGAGAATTTGGTCTCG
CGCCATGTGTTCGGCAGTCTCATCCCGCGTCAGCCTGCTCATCTCCATAC
TCAGGCTGAATTTGGTGCTTACTTACGGGATTCCTCCCGATTTCCGTGGC
GGCGTCTATTTATTTTATTTAAACCGCCATGCGCCATCGGCGTCAGTCTC
GAGTTTTTGTCGGGTCACGCAATTGCGTACCGATGACGTTCACTGCCGAG
AGTCCGTCGGCACAGGGCCAGTAAACCTCAAGGTGGTTTCAAACGGGTGC
TGCCTTGGCAGATCACCATGGGCCAATTGTTATGTGCCTCTCTTTCCCAC
ACTCACTATTATTATAAAGGGGGCATATTGAAAGCACTGGCGGATCATTT
ATATAGCTCTATTATGTTGGAAGAGAAAGCATCGATTCGTCGCCCGCTTT
CCCCATTTTTGCTTACTGCCTTATCGATGCCATATTGACCCTCATCGCCG
AATGTGCCATATAATATGCCTTATAACAGGGGGGACGGGAGGGCGGTGCC
ACGAGAGCTGGACAGGAAAACGGGCGATGCGGTTGATTTGAGACTCGAAG
AGATCGGGATGGGCAGCGTCGGACAGTGAGTCCATCCCCTCCTCCGCTAC
TTTGCTGCCCCTTCGACGCCCTGCGACGCGGCGTTTCGAACCATCGGCTG
CGGAGGCTGGCAGCGCAATACAAGAGGGGGGAGAGACCGCGTAGCGATCA
TTTCCCTCCTCCGCATTACGAGAGCGAGGGATGTGAAAGGTCACACCATC
TACGGTGCGAGTAGAGAGGTTTCGCAGTGGGTGTGCCGCGCGGAGGGAGT
GACTGCGGGGAAGCATCTACCGGTACAGCAAACCGTATCGTGTATGTGTA
TGTGTGCTTTTTTTGGGGGGGGAGGGGTTGTCTGCGATATTTTCGTTTTT
TCCAGTGGAGGAGGGGTCGCGCGTGGTGCTCAGAGCATCCTCGATTGGAA
ATCGAAAGCGACCGTTGGGGATCGTAGGCTTTAACTAGTATGCTCTCCTT
TCAAAATGTGAGAAAAGAGATGATCGACGGGAAGTTTGGCACAAGTTCGT
TGGAGAGAAGCCGGCGACATCGGTCGAAGCGTAGCAGGTAGTTGACCCAT
TTAGGAAAATATCTCGCGAATCGCAGATTCGTTGGTACCATGGCCCGTCT
TGTGTGTGTTGTAGCTCTGGATCACTTAAGCATTAGCATTTGGCATTGAT
GATGGATCAGTGGATCTATCGCCTGCGTCACGCCGTCGTGAGACGTGTAA
GCGACACGGCCGACGCGCCTGAGGAAAGCGCTAGAGAATCTCGTCCTGCC
TTCATCTATCATCTATCATTCATTTATTTGTAAAGAAGAGCGTTAGGCGA
TGACCTGCGGAATAAAAATGTCGAGCTATTAATATGCATTTGAATATCAA
TATTAATATAGTATACTTTAAACTATAATATTATTAGTATAAGTAGGTTC
TAATGCACGGGTGAAACGGGCGCAGTAATTACAGTCACGTACATAGACTA
TTAATACTACCGTTTGTTTGGGGCTATCCAC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1001:26391..32621+

>mRNA_F-serratus_M_contig1001.121.1 ID=mRNA_F-serratus_M_contig1001.121.1|Name=mRNA_F-serratus_M_contig1001.121.1|organism=Fucus serratus male|type=CDS|length=1356bp|location=Sequence derived from alignment at F-serratus_M_contig1001:26391..32621+ (Fucus serratus male)
ATGGACACAACCATGTCTATGCTGTACATTTTTGTTTTCGTTTTGCTGTT
GTCTTGCCCAGTCGCGAGAGCTTTTTTGGCTTCCGGGTGGCAAGAGGCAG
CGAGCTCACAAGAAGTTGAGAGAAGCCGGCACATACCAACATCCTCCACG
GGCTTCGTTGCTCCTTCAGGAACAGCGGAACTCAAGGGGAGAAAAGCAAG
GGACTTCAGATGGACACAACCATGTCTATGCTGTACATTTTTGTTTTCGT
TTTGCTGTTGTCTTGCCCAGTCGCGAGAGCTTTTTTGGCTTCCGGGTGGC
AAGAGGCAGCGAGCTCACAAGAAGTTGAGAGAAGCCGGCACATACCAACA
TCCTCCACGGGCTTCGTTGCTCCTTCAGGAACAGCGGAACTCAAGGGGAG
AAAAGCAAGGGACTTCAGGAGAGAACGCGCTTACCGTCGCGCCGCTCAGC
GGCCAGAGCGGCGCGTACAGAGCCCCGGTCGCGACCAAAAGGTGGCGCCG
CTCAGCGCTTTGAATCCAGACACGGTGTACTCGGCGAAAGAGTGGATCGC
GGGAGTGGCGGGGGGGTCTGTGGGGGTCTTGGGGACGCTCATCCAGCTCG
AACTCAAGCAGGAGAGAACGCGCTTACCGTCGCGCCGCTCAGCGGCCAGA
GCGGCGCGTACAGAGCCCCGGTCGCGACCAAAAGGTGGCGCCGCTCAGCG
CTTTGAATCCAGACACGGTGTACTCGGCGAAAGAGTGGATCGCGGGAGTG
GCGGGGGGGTCTGTGGGGGTCTTGGGGACGCTCATCCAGCTCGAACTCAA
GCAGGAGGCGCTCAGGTCCCGTCGGAATTGTCCGTATTGCAATGGCAGCG
GCAAGCTGGTGTGCGCGATGTGCTGCTCGGCGGGGACTTTCACGATGAAG
CTCCCCGGGGCAGAAACGTACAGCACGCTGCCGTGCCCCGGGTGCTCGGG
CAAGCGGTACATCACGTGCTTGAACTGCAGGAGGCGCTCAGGTCCCGTCG
GAATTGTCCGTATTGCAATGGCAGCGGCAAGCTGGTGTGCGCGATGTGCT
GCTCGGCGGGGACTTTCACGATGAAGCTCCCCGGGGCAGAAACGTACAGC
ACGCTGCCGTGCCCCGGGTGCTCGGGCAAGCGGTACATCACGTGCTTGAA
CTGCAGGGGGGACGGGAGGGCGGTGCCACGAGAGCTGGACAGGAAAACGG
GCGATGCGGTTGATTTGAGACTCGAAGAGATCGGGATGGGCAGCGTCGGA
CAGTGAGGGGGACGGGAGGGCGGTGCCACGAGAGCTGGACAGGAAAACGG
GCGATGCGGTTGATTTGAGACTCGAAGAGATCGGGATGGGCAGCGTCGGA
CAGTGA
back to top