mRNA_F-serratus_M_contig1000.119.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig1000.119.1 vs. uniprot
Match: A0A438FVW1_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FVW1_VITVI) HSP 1 Score: 187 bits (476), Expect = 2.450e-49 Identity = 118/428 (27.57%), Postives = 204/428 (47.66%), Query Frame = 3 Query: 60 GLAYRRSTAPTRHRCS*RMERGRYGFFD----------CILNGEISEGVYTRQAPGFETKDSQGRSLIMQLSRSIYGLRQSPKACSVTTDKDLSTICFLPTVSDACVHVKGSGDSYVILTSYVDNLFITGPNDNAMAEVRKVFMEKFTMTDFKDATRILGIEIFQDKERSTISITQALY---------------------------------------------YQSIMGSLIFLCQCTRFDICIAVSQEARFMSKPTPVHMGAVKRILRYLRDKPNLHITYSRNSNFELIGFCDALNGTGNPEMARSTSGSMYFLSEGIVHFSTSVQKIAVQSTTEAELIARSSCAKQEIYLCGILGGLGWRTF--RSARIFCDNKGALLLAGQGSYSSRSKHLAIRFMGLRDWIIDETLVIDHVSNKGQLSDILTK 1172 G+ Y + +P + S R+ FD LNGE+ E VY +Q GF + D G L+ +L +SIYGL+Q+ + + +S+ F+ V D C+++K SG L YVD++ + + + EV++ + F M D +A+ ++GI+I +D+ + + ++Q Y Y S +GSL++ CTR DI AV R+ S P H A K+++RYL+ + + Y R SN E++G+ D+ + G + +STSG ++ L+ G + + + Q + ST EAE I+ ++L + GL R I+CDN A+ +A SRSKH+ I+++ +R+ + ++ +VI+H+S + ++D LTK Sbjct: 352 GIDYTETFSPVSKKDSLRIILALVAHFDLELQQMDVKTAFLNGELEEEVYMKQPEGFPSSD--GEQLVCKLKKSIYGLKQASRQWYLKFHNIISSFGFVENVMDQCIYLKVSGSKVCFLVLYVDDILLATNDKGLLHEVKQFLSKNFDMKDMGEASYVIGIKIHRDRFKGILGLSQETYINKVLERFRMKNCSPSVSPIVKGDRFNLNQCPKNDLEREQMKNIPYASAVGSLMYAQVCTRPDIAFAVGMLGRYQSNPGIDHWKAAKKVMRYLQGTKDYKLMYRRTSNLEVVGYSDS-DFAGCVDSRKSTSGYIFILAGGAISWRSVKQTMTATSTMEAEFISCFEATSHGVWLKSFISGLRVMDSISRPLSIYCDNSAAVFMAKNNKSGSRSKHIDIKYLAIRERVKEKKVVIEHISTELMIADPLTK 776
BLAST of mRNA_F-serratus_M_contig1000.119.1 vs. uniprot
Match: A0A438JMN5_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JMN5_VITVI) HSP 1 Score: 183 bits (464), Expect = 3.170e-49 Identity = 111/428 (25.93%), Postives = 203/428 (47.43%), Query Frame = 3 Query: 60 GLAYRRSTAPTRHRCS*RMERGRYGFFD----------CILNGEISEGVYTRQAPGFETKDSQGRSLIMQLSRSIYGLRQSPKACSVTTDKDLSTICFLPTVSDACVHVKGSGDSYVILTSYVDNLFITGPNDNAMAEVRKVFMEKFTMTDFKDATRILGIEIFQDKERSTISITQALY---------------------------------------------YQSIMGSLIFLCQCTRFDICIAVSQEARFMSKPTPVHMGAVKRILRYLRDKPNLHITYSRNSNFELIGFCDALNGTGNPEMARSTSGSMYFLSEGIVHFSTSVQKIAVQSTTEAELIARSSCAKQEIYLCGILGGLGW--RTFRSARIFCDNKGALLLAGQGSYSSRSKHLAIRFMGLRDWIIDETLVIDHVSNKGQLSDILTK 1172 G+ Y+ + +P + S R+ FD LNG + E +Y Q GF K ++ L+ +L +SIYGL+Q+ + + + +++ F + D C+++K SG ++ L YVD++ + + + E ++ + F M D +A ++ IEIF+D+ R + ++Q Y Y S +GSL++ CTR DI AV R+ S P H A K+++RYL+ + +TY R+ E++G+ D+ G G + +STSG ++ L+ G + + + Q I ST EAE +A + ++L + GLG + RI+CDN A+ + G +SS SKH+ ++++ +++ + + + I+++ ++D LTK Sbjct: 71 GIDYKDTFSPVSKKDSLRIIMALVAHFDLELHQMDVKTAFLNGNLDEDIYMEQPEGFAKKGNE--HLVCKLKKSIYGLKQASRQWYIKFNNTITSFGFKENILDQCIYLKVSGSKFIFLILYVDDILLASSDLGLLRETKEYLSKNFHMVDMGEANYVISIEIFRDRSRGVLGLSQKGYIDRVLERFNMQSCSSGIAPILKGDKLSKMQCPRNNIEREQMKKIPYASAVGSLMYAQTCTRPDISFAVGMLGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYKRSEQLEVVGYSDSDYG-GCLDSLKSTSGFVFMLANGAISWKSEKQSITASSTMEAEFVACFEASSHALWLRNFISGLGVVDSIAKPLRIYCDNTAAVFFSKNGKFSSGSKHMDLKYLVVKERVQKQQVSIENIRTTLMVADPLTK 495
BLAST of mRNA_F-serratus_M_contig1000.119.1 vs. uniprot
Match: B5U9F7_SOYBN (Gag-protease-integrase-RT-RNaseH polyprotein n=1 Tax=Glycine max TaxID=3847 RepID=B5U9F7_SOYBN) HSP 1 Score: 189 bits (479), Expect = 3.290e-49 Identity = 119/428 (27.80%), Postives = 204/428 (47.66%), Query Frame = 3 Query: 60 GLAYRRSTAPTRHRCS*RMERGRYGFFD----------CILNGEISEGVYTRQAPGFETKDSQGRSLIMQLSRSIYGLRQSPKACSVTTDKDLSTICFLPTVSDACVHVKGSGDSYVILTSYVDNLFITGPNDNAMAEVRKVFMEKFTMTDFKDATRILGIEIFQDKERSTISITQALY---------------------------------------------YQSIMGSLIFLCQCTRFDICIAVSQEARFMSKPTPVHMGAVKRILRYLRDKPNLHITYSRNSNFELIGFCDALNGTGNPEMARSTSGSMYFLSEGIVHFSTSVQKIAVQSTTEAELIARSSCAKQEIYLCGILGGLGW--RTFRSARIFCDNKGALLLAGQGSYSSRSKHLAIRFMGLRDWIIDETLVIDHVSNKGQLSDILTK 1172 G+ Y+ + +P + S R+ FD LNG++ E VY +Q GF + + G L+ +L++SIYGL+Q+ + + +S+ F D C++ K SG L YVD++ + + + EV++ + F M D DA+ ++GI+I +D+ R + ++Q Y Y S++GSL++ CTR DI AV R+ S P H A K++LRYL+ + + Y + N + IG+ D+ + G + RSTSG ++ ++ G + + + Q +A ST EAE ++ ++L + GL R RIFCDN A+ +A SRSKH+ I+++ +R+ + D+ +VI+H+S + ++D LTK Sbjct: 877 GIDYKETFSPVSKKDSLRIILALVAHFDLELQQMDVKTAFLNGDLEEEVYMKQPEGFSS--NSGEHLVCKLNKSIYGLKQASRQWYLKFHGIISSFGFDENPMDQCIYHKVSGSKICFLVLYVDDILLAANDRGLLHEVKQFLSKNFDMKDMGDASYVIGIKIHRDRSRGILGLSQETYINKILERFRMKDCSPSVAPIVKGDRFNLNQCPKNDFEREQMKNIPYASVVGSLMYAQVCTRPDIAFAVGMLGRYQSNPGIDHWRAAKKVLRYLQGTKDYMLMYRQTDNLDAIGYSDS-DFAGCVDSRRSTSGYIFMMAGGAISWGSVKQSLAATSTMEAEFVSCFEATSHGVWLKSFISGLKIIDTISRPLRIFCDNSAAVFMAKNNKSGSRSKHIDIKYLAIRERVKDKKVVIEHISTELMIADPLTK 1301
BLAST of mRNA_F-serratus_M_contig1000.119.1 vs. uniprot
Match: A0A438GMM1_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GMM1_VITVI) HSP 1 Score: 187 bits (475), Expect = 5.400e-49 Identity = 118/428 (27.57%), Postives = 204/428 (47.66%), Query Frame = 3 Query: 60 GLAYRRSTAPTRHRCS*RMERGRYGFFDC----------ILNGEISEGVYTRQAPGFETKDSQGRSLIMQLSRSIYGLRQSPKACSVTTDKDLSTICFLPTVSDACVHVKGSGDSYVILTSYVDNLFITGPNDNAMAEVRKVFMEKFTMTDFKDATRILGIEIFQDKERSTISITQALY---------------------------------------------YQSIMGSLIFLCQCTRFDICIAVSQEARFMSKPTPVHMGAVKRILRYLRDKPNLHITYSRNSNFELIGFCDALNGTGNPEMARSTSGSMYFLSEGIVHFSTSVQKIAVQSTTEAELIARSSCAKQEIYLCGILGGLGWRTF--RSARIFCDNKGALLLAGQGSYSSRSKHLAIRFMGLRDWIIDETLVIDHVSNKGQLSDILTK 1172 G+ Y + +P + S R+ FD LNGE+ E VY +Q GF + D G L+ +L +SIYGL+Q+ + + +S+ F+ V D C+++K SG L YVD++ + + + EV++ + F M D +A+ ++GI+I +D+ + + ++Q Y Y S +GSL++ CTR DI AV R+ S P H A K+++RYL+ + + Y R SN E++G+ D+ + G + +STSG ++ L+ G + + + Q + ST EAE I+ ++L + GL R I+CDN A+ +A SRSKH+ I+++ +R+ + ++ +VI+H+S + ++D LTK Sbjct: 424 GIDYTETFSPVSKKDSLRIILALVAHFDLELQQMDVKTTFLNGELEEEVYMKQPEGFPSSD--GEQLVCKLKKSIYGLKQASRQWYLKFHNIISSFGFVENVMDQCIYLKVSGSKVCFLVLYVDDILLATNDKGLLHEVKQFLSKNFDMKDMGEASYVIGIKIHRDRFKGILGLSQETYINKVLERFRMKNCSPSVSPIVKGDRFNLDQCPKNDLEREQMKNIPYASAVGSLMYAQVCTRPDIAFAVGMLGRYQSNPGIDHWKAAKKVMRYLQGTKDYKLMYRRTSNLEVVGYSDS-DFAGCVDSRKSTSGYIFILAGGAISWRSVKQTMTATSTMEAEFISCFEATSHGVWLKSFISGLRVMDSISRPLSIYCDNSAAVFMAKNNKSGSRSKHIDIKYLAIRERVKEKKVVIEHISTELMIADPLTK 848
BLAST of mRNA_F-serratus_M_contig1000.119.1 vs. uniprot
Match: A0A438GI73_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GI73_VITVI) HSP 1 Score: 187 bits (476), Expect = 8.250e-49 Identity = 118/428 (27.57%), Postives = 204/428 (47.66%), Query Frame = 3 Query: 60 GLAYRRSTAPTRHRCS*RMERGRYGFFD----------CILNGEISEGVYTRQAPGFETKDSQGRSLIMQLSRSIYGLRQSPKACSVTTDKDLSTICFLPTVSDACVHVKGSGDSYVILTSYVDNLFITGPNDNAMAEVRKVFMEKFTMTDFKDATRILGIEIFQDKERSTISITQALY---------------------------------------------YQSIMGSLIFLCQCTRFDICIAVSQEARFMSKPTPVHMGAVKRILRYLRDKPNLHITYSRNSNFELIGFCDALNGTGNPEMARSTSGSMYFLSEGIVHFSTSVQKIAVQSTTEAELIARSSCAKQEIYLCGILGGLGWRTF--RSARIFCDNKGALLLAGQGSYSSRSKHLAIRFMGLRDWIIDETLVIDHVSNKGQLSDILTK 1172 G+ Y + +P + S R+ FD LNGE+ E VY +Q GF + D G L+ +L +SIYGL+Q+ + + +S+ F+ V D C+++K SG L YVD++ + + + EV++ + F M D +A+ ++GI+I +D+ + + ++Q Y Y S +GSL++ CTR DI AV R+ S P H A K+++RYL+ + + Y R SN E++G+ D+ + G + +STSG ++ L+ G + + + Q + ST EAE I+ ++L + GL R I+CDN A+ +A SRSKH+ I+++ +R+ + ++ +VI+H+S + ++D LTK Sbjct: 900 GIDYTETFSPVSKKDSLRIILALVAHFDLELQQMDVKTAFLNGELEEEVYMKQPEGFPSSD--GEQLVCKLKKSIYGLKQASRQWYLKFHNIISSFGFVENVMDQCIYLKVSGSKVCFLVLYVDDILLATNDKGLLHEVKQFLSKNFDMKDMGEASYVIGIKIHRDRFKGILGLSQETYINKVLERFRMKNCSPSVSPIVKGDRFNLNQCPKNDLEREQMKNIPYASAVGSLMYAQVCTRPDIAFAVGMLGRYQSNPGIDHWKAAKKVMRYLQGTKDYKLMYRRTSNLEVVGYSDS-DFAGCVDSRKSTSGYIFILAGGAISWRSVKQTMTATSTMEAEFISCFEATSHGVWLKSFISGLRVMDSISRPLSIYCDNSAAVFMAKNNKSGSRSKHIDIKYLAIRERVKEKKVVIEHISTELMIADPLTK 1324 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1000.119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pages
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1000.119.1 >prot_F-serratus_M_contig1000.119.1 ID=prot_F-serratus_M_contig1000.119.1|Name=mRNA_F-serratus_M_contig1000.119.1|organism=Fucus serratus male|type=polypeptide|length=353bp MERGRYGFFDCILNGEISEGVYTRQAPGFETKDSQGRSLIMQLSRSIYGLback to top mRNA from alignment at F-serratus_M_contig1000:90613..91910+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1000.119.1 ID=mRNA_F-serratus_M_contig1000.119.1|Name=mRNA_F-serratus_M_contig1000.119.1|organism=Fucus serratus male|type=mRNA|length=1298bp|location=Sequence derived from alignment at F-serratus_M_contig1000:90613..91910+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1000:90613..91910+ >mRNA_F-serratus_M_contig1000.119.1 ID=mRNA_F-serratus_M_contig1000.119.1|Name=mRNA_F-serratus_M_contig1000.119.1|organism=Fucus serratus male|type=CDS|length=2118bp|location=Sequence derived from alignment at F-serratus_M_contig1000:90613..91910+ (Fucus serratus male)back to top |